mRNA_H-paniculata_contig20181.5198.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20181.5198.1
Unique NamemRNA_H-paniculata_contig20181.5198.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20181.5198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20181contigH-paniculata_contig20181:1950..2289 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size341
Cds size339
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929518.731411-CDS-H-paniculata_contig20181:1949..22881622929518.731411-CDS-H-paniculata_contig20181:1949..2288Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20181 1950..2288 +
1691480895.9879742-CDS-H-paniculata_contig20181:1949..22881691480895.9879742-CDS-H-paniculata_contig20181:1949..2288Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20181 1950..2288 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929518.74543-UTR-H-paniculata_contig20181:2288..22891622929518.74543-UTR-H-paniculata_contig20181:2288..2289Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20181 2289..2289 +
1691480895.9982636-UTR-H-paniculata_contig20181:2288..22891691480895.9982636-UTR-H-paniculata_contig20181:2288..2289Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20181 2289..2289 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20181.5198.1prot_H-paniculata_contig20181.5198.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20181 1950..2288 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20181.5198.1

>prot_H-paniculata_contig20181.5198.1 ID=prot_H-paniculata_contig20181.5198.1|Name=mRNA_H-paniculata_contig20181.5198.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp
PLPSSLLPLLPSLSSRPPDSLLFTRPSPAPAPPEGPTPPPVSPPLPSAIP
PLSSFRIPPAPPPPSFTAWYPLTMATPPSSPRAPPVPELTGCPLPPSPLP
PLSSSLPSSLSL*
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mRNA from alignment at H-paniculata_contig20181:1950..2289+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20181.5198.1 ID=mRNA_H-paniculata_contig20181.5198.1|Name=mRNA_H-paniculata_contig20181.5198.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=340bp|location=Sequence derived from alignment at H-paniculata_contig20181:1950..2289+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGTTGCCGTCTTCGTTGCTTCCATTGCTTCCATCGCTTTCATCACGGCC
GCCTGACTCGCTGCTGTTTACACGACCTTCGCCAGCCCCTGCGCCGCCGG
AGGGGCCTACTCCACCACCGGTATCTCCACCCCTCCCGTCAGCAATCCCT
CCGTTATCCTCCTTCCGCATACCCCCTGCTCCACCGCCTCCTTCATTTAC
AGCATGGTATCCGCTCACAATGGCGACGCCACCGTCATCTCCCCGTGCTC
CTCCTGTCCCAGAGTTGACGGGGTGTCCGCTGCCTCCATCACCGCTGCCG
CCATTGTCGTCCTCCCTGCCTTCTTCGCTTTCTCTGTGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig20181:1950..2289+

>mRNA_H-paniculata_contig20181.5198.1 ID=mRNA_H-paniculata_contig20181.5198.1|Name=mRNA_H-paniculata_contig20181.5198.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig20181:1950..2289+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGTTGCCGTCTTCGTTGCTTCCATTGCTTCCATCGCTTTCATCACGGCC
GCCTGACTCGCTGCTGTTTACACGACCTTCGCCAGCCCCTGCGCCGCCGG
AGGGGCCTACTCCACCACCGGTATCTCCACCCCTCCCGTCAGCAATCCCT
CCGTTATCCTCCTTCCGCATACCCCCTGCTCCACCGCCTCCTTCATTTAC
AGCATGGTATCCGCTCACAATGGCGACGCCACCGTCATCTCCCCGTGCTC
CTCCTGTCCCAGAGTTGACGGGGTGTCCGCTGCCTCCATCACCGCTGCCG
CCATTGTCGTCCTCCCTGCCTTCTTCGCTTTCTCTGTGACCGTTGCCGTC
TTCGTTGCTTCCATTGCTTCCATCGCTTTCATCACGGCCGCCTGACTCGC
TGCTGTTTACACGACCTTCGCCAGCCCCTGCGCCGCCGGAGGGGCCTACT
CCACCACCGGTATCTCCACCCCTCCCGTCAGCAATCCCTCCGTTATCCTC
CTTCCGCATACCCCCTGCTCCACCGCCTCCTTCATTTACAGCATGGTATC
CGCTCACAATGGCGACGCCACCGTCATCTCCCCGTGCTCCTCCTGTCCCA
GAGTTGACGGGGTGTCCGCTGCCTCCATCACCGCTGCCGCCATTGTCGTC
CTCCCTGCCTTCTTCGCTTTCTCTGTGA
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