mRNA_H-paniculata_contig20158.5193.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20158.5193.1
Unique NamemRNA_H-paniculata_contig20158.5193.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20158.5193.1 vs. uniprot
Match: A0A6H5L0J7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0J7_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 9.830e-22
Identity = 51/92 (55.43%), Postives = 65/92 (70.65%), Query Frame = 1 
Query:   31 AHAEIIHSVADLVEDEQYLFFALVSRGWRKAWGQRPTFTRAVTAYTSPWQLLHCFDWGLQQSDVVCSEVAGLGNLQLLQCARANNCAWDEET 306
            A  +I+ +VA+ V+D QYLFFA VSRGWR  WG+RPT T+A+TA TS  QL   F+ GL+++  VC  VAGLG L LL+ ARA  C W+E T
Sbjct:    5 AAVDIVSTVAEFVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVPQLSLSFECGLRRTAAVCETVAGLGRLDLLRRARAMGCQWNENT 96
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BLAST of mRNA_H-paniculata_contig20158.5193.1 vs. uniprot
Match: D7FMS7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS7_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 2.480e-20
Identity = 50/92 (54.35%), Postives = 64/92 (69.57%), Query Frame = 1 
Query:   31 AHAEIIHSVADLVEDEQYLFFALVSRGWRKAWGQRPTFTRAVTAYTSPWQLLHCFDWGLQQSDVVCSEVAGLGNLQLLQCARANNCAWDEET 306
            A  +I+ +V + V+D QYLFFA VSRGWR  WG+RPT T+A+TA TS  QL   F+ GL+++  VC  VAGLG L LL+ ARA  C W+E T
Sbjct:    7 AAVDIVSTVGEFVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVSQLSLSFECGLRRTAAVCETVAGLGRLDLLRRARAMGCPWNENT 98
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BLAST of mRNA_H-paniculata_contig20158.5193.1 vs. uniprot
Match: A0A6H5L0K8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0K8_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 9.370e-20
Identity = 49/92 (53.26%), Postives = 64/92 (69.57%), Query Frame = 1 
Query:   31 AHAEIIHSVADLVEDEQYLFFALVSRGWRKAWGQRPTFTRAVTAYTSPWQLLHCFDWGLQQSDVVCSEVAGLGNLQLLQCARANNCAWDEET 306
            A+  ++  +A+ V+D Q+LFFA VSRGWR  WG+RPT T+A+TA TS  QL   F+ GL+++  VC  VAGLG L LLQ ARA  C W+E T
Sbjct:   23 ANVYLLSYLAEFVDDNQHLFFASVSRGWRDVWGKRPTVTKALTADTSVPQLSLSFECGLRRTAAVCETVAGLGRLDLLQRARAMGCPWNENT 114
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BLAST of mRNA_H-paniculata_contig20158.5193.1 vs. uniprot
Match: D8LDD9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDD9_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 3.620e-16
Identity = 47/93 (50.54%), Postives = 58/93 (62.37%), Query Frame = 1 
Query:   31 AHAEIIHSVADLVEDEQYLFFALVSRGWRKAWGQRPTFTRAVTAYTSPWQLLHCFDWGLQQSDV-VCSEVAGLGNLQLLQCARANNCAWDEET 306
            A A++I   ++ V D+Q+LFFA VSR WR AW  RPT TRA+T  TSP QL H  D GL      VC+ +A LG L LL+ ARA    WD+ T
Sbjct:    7 ATADVISHASEFVHDDQFLFFASVSRAWRGAWRGRPTSTRAITPDTSPSQLRHSVDCGLSPGGTAVCTAIASLGRLDLLRAARALGFRWDKMT 99
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BLAST of mRNA_H-paniculata_contig20158.5193.1 vs. uniprot
Match: D7G8V2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8V2_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 5.800e-16
Identity = 46/92 (50.00%), Postives = 59/92 (64.13%), Query Frame = 1 
Query:   31 AHAEIIHSVADLVEDEQYLFFALVSRGWRKAWGQRPTFTRAVTAYTSPWQLLHCFDWGLQQSDVVCSEVAGLGNLQLLQCARANNCAWDEET 306
            A +++   + + V+ EQ+LFFA V R W++AWGQRP  TRAVT  T+  QL   F  GL     VC+ VA LG L LLQCAR + CAW+E T
Sbjct:    7 AQSDVASCLVEFVDYEQFLFFAGVCRAWKEAWGQRPPTTRAVTEDTTVAQLSQNFQCGLSLIADVCTSVAKLGRLDLLQCARRHGCAWNEVT 98
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20158.5193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5L0J7_9PHAE9.830e-2255.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMS7_ECTSI2.480e-2054.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0K8_9PHAE9.370e-2053.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDD9_ECTSI3.620e-1650.54Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G8V2_ECTSI5.800e-1650.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20158contigH-paniculata_contig20158:2786..4135 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1350
Cds size1350
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929518.1055806-CDS-H-paniculata_contig20158:2785..41351622929518.1055806-CDS-H-paniculata_contig20158:2785..4135Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20158 2786..4135 +
1691480895.6834455-CDS-H-paniculata_contig20158:2785..41351691480895.6834455-CDS-H-paniculata_contig20158:2785..4135Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20158 2786..4135 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20158.5193.1prot_H-paniculata_contig20158.5193.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20158 2786..4135 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20158.5193.1

>prot_H-paniculata_contig20158.5193.1 ID=prot_H-paniculata_contig20158.5193.1|Name=mRNA_H-paniculata_contig20158.5193.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=450bp
MSDDNDNNPLAHAEIIHSVADLVEDEQYLFFALVSRGWRKAWGQRPTFTR
AVTAYTSPWQLLHCFDWGLQQSDVVCSEVAGLGNLQLLQCARANNCAWDE
ETCNRAAEGGHLEILLYARANGCSWDEDTCRGAATGGHLEVLQWARQNGC
PWDHFTCAKAAAGRHMEVLLWARANDCPWNELTCSFAAEGGHLDVLQWAR
ENGCPWDASTCSAAAAGGHLPILEWAKANGCPWDEETCSRAAGGGHLDTL
WWARDNGCPWEEWTCIRAAEQGRLEVIQWARANGCPWNEGTCTVSAMRGN
WSILHWAHENGCPWDSGTCGGAAAGGHLEILRWARANGCEWDEDVCSLAA
ARGHLHVIQWAVWNGCPWDSDTCRSAAAGGHLDVLQWAKANGCEWNEDTC
CWAALGGHLDLLKWATAFGCPWDARTCDWATQQGFHHIVSWARANGCPE*
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mRNA from alignment at H-paniculata_contig20158:2786..4135+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20158.5193.1 ID=mRNA_H-paniculata_contig20158.5193.1|Name=mRNA_H-paniculata_contig20158.5193.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1350bp|location=Sequence derived from alignment at H-paniculata_contig20158:2786..4135+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCGACGACAACGACAACAACCCCCTAGCCCACGCGGAGATCATCCA
CAGCGTGGCTGACTTGGTAGAAGACGAGCAATACCTGTTCTTCGCGCTGG
TTTCTCGGGGTTGGAGAAAAGCTTGGGGGCAGCGTCCGACATTTACAAGG
GCCGTTACTGCCTATACATCGCCCTGGCAGCTACTACACTGCTTCGATTG
GGGTTTGCAGCAGAGCGACGTAGTGTGCAGCGAAGTGGCAGGTCTTGGTA
ACCTCCAGCTTCTCCAGTGCGCACGGGCGAACAACTGTGCCTGGGACGAG
GAGACGTGTAACAGGGCAGCCGAGGGTGGACATCTGGAGATTCTGCTGTA
CGCCCGAGCAAACGGCTGCTCGTGGGATGAGGACACCTGTCGAGGAGCCG
CCACGGGAGGGCACCTTGAAGTTCTCCAGTGGGCTAGGCAAAACGGCTGT
CCCTGGGACCACTTCACATGCGCCAAAGCCGCAGCCGGGAGGCATATGGA
GGTCCTCCTGTGGGCAAGAGCGAACGACTGTCCGTGGAACGAGCTCACGT
GCAGTTTCGCAGCGGAGGGCGGTCACTTGGACGTTCTTCAGTGGGCGCGG
GAGAATGGCTGTCCATGGGATGCGAGTACCTGTAGCGCTGCCGCCGCGGG
GGGGCATCTGCCCATTCTCGAGTGGGCGAAAGCGAATGGGTGCCCGTGGG
ATGAGGAAACCTGCAGCCGGGCGGCGGGCGGAGGGCATCTGGACACTCTT
TGGTGGGCACGGGACAACGGCTGCCCCTGGGAAGAGTGGACGTGCATCAG
GGCGGCCGAGCAGGGTCGCTTGGAGGTCATTCAATGGGCTAGAGCGAATG
GGTGCCCCTGGAACGAGGGCACCTGCACTGTGTCGGCGATGAGAGGAAAC
TGGAGCATTCTGCATTGGGCCCACGAGAACGGCTGCCCCTGGGATAGCGG
CACTTGTGGTGGGGCTGCGGCGGGGGGGCACTTGGAAATCCTGCGTTGGG
CGCGAGCGAATGGGTGCGAGTGGGATGAGGATGTGTGTAGCTTGGCGGCG
GCGAGGGGGCACCTGCATGTGATTCAGTGGGCGGTTTGGAATGGCTGTCC
GTGGGACAGTGACACATGCCGTTCTGCCGCGGCGGGAGGGCACCTTGATG
TGCTTCAGTGGGCAAAGGCTAATGGATGCGAATGGAACGAGGACACCTGC
TGCTGGGCTGCACTCGGAGGGCACCTGGATTTGCTCAAATGGGCGACTGC
GTTTGGGTGCCCCTGGGATGCAAGAACGTGTGACTGGGCTACCCAGCAGG
GGTTCCATCACATCGTGAGCTGGGCGAGGGCGAACGGCTGTCCGGAATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig20158:2786..4135+

>mRNA_H-paniculata_contig20158.5193.1 ID=mRNA_H-paniculata_contig20158.5193.1|Name=mRNA_H-paniculata_contig20158.5193.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2700bp|location=Sequence derived from alignment at H-paniculata_contig20158:2786..4135+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCGACGACAACGACAACAACCCCCTAGCCCACGCGGAGATCATCCA
CAGCGTGGCTGACTTGGTAGAAGACGAGCAATACCTGTTCTTCGCGCTGG
TTTCTCGGGGTTGGAGAAAAGCTTGGGGGCAGCGTCCGACATTTACAAGG
GCCGTTACTGCCTATACATCGCCCTGGCAGCTACTACACTGCTTCGATTG
GGGTTTGCAGCAGAGCGACGTAGTGTGCAGCGAAGTGGCAGGTCTTGGTA
ACCTCCAGCTTCTCCAGTGCGCACGGGCGAACAACTGTGCCTGGGACGAG
GAGACGTGTAACAGGGCAGCCGAGGGTGGACATCTGGAGATTCTGCTGTA
CGCCCGAGCAAACGGCTGCTCGTGGGATGAGGACACCTGTCGAGGAGCCG
CCACGGGAGGGCACCTTGAAGTTCTCCAGTGGGCTAGGCAAAACGGCTGT
CCCTGGGACCACTTCACATGCGCCAAAGCCGCAGCCGGGAGGCATATGGA
GGTCCTCCTGTGGGCAAGAGCGAACGACTGTCCGTGGAACGAGCTCACGT
GCAGTTTCGCAGCGGAGGGCGGTCACTTGGACGTTCTTCAGTGGGCGCGG
GAGAATGGCTGTCCATGGGATGCGAGTACCTGTAGCGCTGCCGCCGCGGG
GGGGCATCTGCCCATTCTCGAGTGGGCGAAAGCGAATGGGTGCCCGTGGG
ATGAGGAAACCTGCAGCCGGGCGGCGGGCGGAGGGCATCTGGACACTCTT
TGGTGGGCACGGGACAACGGCTGCCCCTGGGAAGAGTGGACGTGCATCAG
GGCGGCCGAGCAGGGTCGCTTGGAGGTCATTCAATGGGCTAGAGCGAATG
GGTGCCCCTGGAACGAGGGCACCTGCACTGTGTCGGCGATGAGAGGAAAC
TGGAGCATTCTGCATTGGGCCCACGAGAACGGCTGCCCCTGGGATAGCGG
CACTTGTGGTGGGGCTGCGGCGGGGGGGCACTTGGAAATCCTGCGTTGGG
CGCGAGCGAATGGGTGCGAGTGGGATGAGGATGTGTGTAGCTTGGCGGCG
GCGAGGGGGCACCTGCATGTGATTCAGTGGGCGGTTTGGAATGGCTGTCC
GTGGGACAGTGACACATGCCGTTCTGCCGCGGCGGGAGGGCACCTTGATG
TGCTTCAGTGGGCAAAGGCTAATGGATGCGAATGGAACGAGGACACCTGC
TGCTGGGCTGCACTCGGAGGGCACCTGGATTTGCTCAAATGGGCGACTGC
GTTTGGGTGCCCCTGGGATGCAAGAACGTGTGACTGGGCTACCCAGCAGG
GGTTCCATCACATCGTGAGCTGGGCGAGGGCGAACGGCTGTCCGGAATAA
ATGAGCGACGACAACGACAACAACCCCCTAGCCCACGCGGAGATCATCCA
CAGCGTGGCTGACTTGGTAGAAGACGAGCAATACCTGTTCTTCGCGCTGG
TTTCTCGGGGTTGGAGAAAAGCTTGGGGGCAGCGTCCGACATTTACAAGG
GCCGTTACTGCCTATACATCGCCCTGGCAGCTACTACACTGCTTCGATTG
GGGTTTGCAGCAGAGCGACGTAGTGTGCAGCGAAGTGGCAGGTCTTGGTA
ACCTCCAGCTTCTCCAGTGCGCACGGGCGAACAACTGTGCCTGGGACGAG
GAGACGTGTAACAGGGCAGCCGAGGGTGGACATCTGGAGATTCTGCTGTA
CGCCCGAGCAAACGGCTGCTCGTGGGATGAGGACACCTGTCGAGGAGCCG
CCACGGGAGGGCACCTTGAAGTTCTCCAGTGGGCTAGGCAAAACGGCTGT
CCCTGGGACCACTTCACATGCGCCAAAGCCGCAGCCGGGAGGCATATGGA
GGTCCTCCTGTGGGCAAGAGCGAACGACTGTCCGTGGAACGAGCTCACGT
GCAGTTTCGCAGCGGAGGGCGGTCACTTGGACGTTCTTCAGTGGGCGCGG
GAGAATGGCTGTCCATGGGATGCGAGTACCTGTAGCGCTGCCGCCGCGGG
GGGGCATCTGCCCATTCTCGAGTGGGCGAAAGCGAATGGGTGCCCGTGGG
ATGAGGAAACCTGCAGCCGGGCGGCGGGCGGAGGGCATCTGGACACTCTT
TGGTGGGCACGGGACAACGGCTGCCCCTGGGAAGAGTGGACGTGCATCAG
GGCGGCCGAGCAGGGTCGCTTGGAGGTCATTCAATGGGCTAGAGCGAATG
GGTGCCCCTGGAACGAGGGCACCTGCACTGTGTCGGCGATGAGAGGAAAC
TGGAGCATTCTGCATTGGGCCCACGAGAACGGCTGCCCCTGGGATAGCGG
CACTTGTGGTGGGGCTGCGGCGGGGGGGCACTTGGAAATCCTGCGTTGGG
CGCGAGCGAATGGGTGCGAGTGGGATGAGGATGTGTGTAGCTTGGCGGCG
GCGAGGGGGCACCTGCATGTGATTCAGTGGGCGGTTTGGAATGGCTGTCC
GTGGGACAGTGACACATGCCGTTCTGCCGCGGCGGGAGGGCACCTTGATG
TGCTTCAGTGGGCAAAGGCTAATGGATGCGAATGGAACGAGGACACCTGC
TGCTGGGCTGCACTCGGAGGGCACCTGGATTTGCTCAAATGGGCGACTGC
GTTTGGGTGCCCCTGGGATGCAAGAACGTGTGACTGGGCTACCCAGCAGG
GGTTCCATCACATCGTGAGCTGGGCGAGGGCGAACGGCTGTCCGGAATAA
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