mRNA_H-paniculata_contig10807.519.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10807.519.1
Unique NamemRNA_H-paniculata_contig10807.519.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig10807.519.1 vs. uniprot
Match: A0A6H5K573_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K573_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 7.650e-44
Identity = 76/133 (57.14%), Postives = 96/133 (72.18%), Query Frame = 1 
Query:   70 RSGEWGLRNPDFVRVDLIEGVPTSGDDQPFDLIFVRDMMLHLPPRHNMRVLKNIEASGARLFMASTFLDGDENFVADTFVPARGHRINLAKAPYCLRPPVALFHDSSTGFPGHRMGLWGLDRDRPLVEGGDCS 468
            R GE GL++P FV  DL+E VP S D  PFDL+FVRD+M+HLP RHN++V++NI+ASGAR  MAST+++ DEN +++TFVP  GH INL+  PYCL  P+A+F D ST     RMGLW L    PL   GDCS
Sbjct:  294 RRGE-GLKDPAFVVADLVESVPASQDGAPFDLVFVRDLMVHLPARHNLKVIQNIQASGARFLMASTYVEADENKLSETFVPPMGHNINLSLPPYCLPEPMAVFLDDSTKRTDLRMGLWDLHEHSPLALSGDCS 425
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BLAST of mRNA_H-paniculata_contig10807.519.1 vs. uniprot
Match: D7FTE5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTE5_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 1.230e-43
Identity = 75/135 (55.56%), Postives = 97/135 (71.85%), Query Frame = 1 
Query:   46 GCSEHQLTRSGEWGLRNPDFVRVDLIEGVPTSGDDQPFDLIFVRDMMLHLPPRHNMRVLKNIEASGARLFMASTFLDGDENFVADTFVPARGHRINLAKAPYCLRPPVALFHDSSTGFPGHRMGLWGLDRDRPLV 450
            G  +  +  +   GL    F++ DL+E +P S D +P+DLIFVRD+MLHL PRHN+R+L+NIEASGAR  MAST +DG++N+ ADTF PA G  +NL+  PYCLRPP+AL+ D+    PG RMGLW LD  RPLV
Sbjct:  290 GSGDEAVASANAGGLHEDSFIQADLVERIPPSMDGKPYDLIFVRDVMLHLAPRHNVRMLQNIEASGARFLMASTNVDGNDNWKADTFRPAIGLLVNLSLPPYCLRPPIALYSDAMPERPGQRMGLWELDPARPLV 424
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BLAST of mRNA_H-paniculata_contig10807.519.1 vs. uniprot
Match: A0A6H5JDW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDW5_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 2.440e-42
Identity = 71/139 (51.08%), Postives = 97/139 (69.78%), Query Frame = 1 
Query:   46 GCSEHQLTRSGEWGLRNPDFVRVDLIEGVPTSGDDQPFDLIFVRDMMLHLPPRHNMRVLKNIEASGARLFMASTFLDGDENFVADTFVPARGHRINLAKAPYCLRPPVALFHDSSTGFPGHRMGLWGLDRDRPLVEGGD 462
            G  +  +  +   GL    F++ DL+E +P S D +P+DLIF+RD+MLHL  +HN+++L+NIEASGAR  MAST +DG++N+ ADTF PA G  +NL+  PYCLRPP+AL+ D+    PG RMGLW LD  RPLV   +
Sbjct:  133 GSGDEAVASASAGGLHGASFIQADLVERIPPSMDGKPYDLIFLRDVMLHLARQHNVQMLQNIEASGARFLMASTNVDGNDNWKADTFRPADGLLVNLSLPPYCLRPPIALYSDAIPERPGQRMGLWELDPARPLVGSNE 271
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BLAST of mRNA_H-paniculata_contig10807.519.1 vs. uniprot
Match: A0A8J1UVM4_OWEFU (Ofus.G24472 protein n=2 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1UVM4_OWEFU)

HSP 1 Score: 54.7 bits (130), Expect = 1.300e-5
Identity = 37/131 (28.24%), Postives = 60/131 (45.80%), Query Frame = 1 
Query:   82 WGLRNPDFVRVDLIEGVPTSGDDQPFDLIFVRDMMLHLPPRHNMRVLKNIEASGARLFMASTF--LDGDENFVADTFVPARGHRINLAKAPYCLRPPVALFHDSSTGFP-GHRMGLWGLDRDRPLVEGGDC 465
            W   + D V+  L         D+ +DL+ +R  + HL     M+VL NI  SG++  +++TF  +  +E    D     R   INL   P  L+PP+  + D   G    H +GLW +    P+ +  +C
Sbjct:   48 WSFFHKDIVKDPL---------DKSYDLVLLRMTLQHLRLHDIMQVLDNINHSGSKYLLSTTFPAVRNNEELTKDIST-GRMRYINLELEPIRLQPPICFYRDGPMGDKENHYLGLWRI----PMFQVNNC 164
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BLAST of mRNA_H-paniculata_contig10807.519.1 vs. uniprot
Match: A0A7V9UP15_9BACT (Class I SAM-dependent methyltransferase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7V9UP15_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 7.810e-5
Identity = 36/119 (30.25%), Postives = 55/119 (46.22%), Query Frame = 1 
Query:   79 EWGLRNPDFVRVDLIEGVPTSGDDQP-FDLIFVRDMMLHLPPRHNMRVLKNIEASGARLFMASTFLDGDENFVADTFVPARGHRINLAKAPYCLRPPVALFHDSSTGFPGHRMGLWGLD 432
            ++G  N  F+ +D+ E      D+ P  D+IF RD+ +HL      R L   + S ++  +AST     EN      +    H +NL   P+ L  P+ L  D   GF    MGLW ++
Sbjct:  122 KYGNENRRFLVLDITE------DNLPQVDVIFCRDVFIHLSFSDVFRALAKFKESKSKYLIASTSPIIQENI---NVITGSMHNLNLELPPFNLPKPIRLIDDRQKGFIERWMGLWKIE 231
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10807.519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K573_9PHAE7.650e-4457.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FTE5_ECTSI1.230e-4355.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JDW5_9PHAE2.440e-4251.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8J1UVM4_OWEFU1.300e-528.24Ofus.G24472 protein n=2 Tax=Owenia fusiformis TaxI... [more]
A0A7V9UP15_9BACT7.810e-530.25Class I SAM-dependent methyltransferase n=1 Tax=Ac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10807contigH-paniculata_contig10807:1553..3296 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.3
Seed ortholog evalue2.6e-25
Seed eggNOG ortholog2880.D7FTE5
Hectar predicted targeting categoryother localisation
EggNOG OGs2E0VG@1,2S88X@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size721
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10807.519.1prot_H-paniculata_contig10807.519.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10807 2756..3061 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928785.4665287-UTR-H-paniculata_contig10807:1552..15941622928785.4665287-UTR-H-paniculata_contig10807:1552..1594Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10807 1553..1594 +
1691480619.029556-UTR-H-paniculata_contig10807:1552..15941691480619.029556-UTR-H-paniculata_contig10807:1552..1594Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10807 1553..1594 +
1622928785.4854636-UTR-H-paniculata_contig10807:2202..23361622928785.4854636-UTR-H-paniculata_contig10807:2202..2336Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10807 2203..2336 +
1691480619.042283-UTR-H-paniculata_contig10807:2202..23361691480619.042283-UTR-H-paniculata_contig10807:2202..2336Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10807 2203..2336 +
1622928785.504392-UTR-H-paniculata_contig10807:2751..27551622928785.504392-UTR-H-paniculata_contig10807:2751..2755Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10807 2752..2755 +
1691480619.0500157-UTR-H-paniculata_contig10807:2751..27551691480619.0500157-UTR-H-paniculata_contig10807:2751..2755Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10807 2752..2755 +
1622928785.54392-UTR-H-paniculata_contig10807:3061..32961622928785.54392-UTR-H-paniculata_contig10807:3061..3296Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10807 3062..3296 +
1691480619.0700161-UTR-H-paniculata_contig10807:3061..32961691480619.0700161-UTR-H-paniculata_contig10807:3061..3296Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10807 3062..3296 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928785.5237155-CDS-H-paniculata_contig10807:2755..30611622928785.5237155-CDS-H-paniculata_contig10807:2755..3061Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10807 2756..3061 +
1691480619.0601285-CDS-H-paniculata_contig10807:2755..30611691480619.0601285-CDS-H-paniculata_contig10807:2755..3061Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10807 2756..3061 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10807.519.1

>prot_H-paniculata_contig10807.519.1 ID=prot_H-paniculata_contig10807.519.1|Name=mRNA_H-paniculata_contig10807.519.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
MMLHLPPRHNMRVLKNIEASGARLFMASTFLDGDENFVADTFVPARGHRI
NLAKAPYCLRPPVALFHDSSTGFPGHRMGLWGLDRDRPLVEGGDCSLSAW
S*
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mRNA from alignment at H-paniculata_contig10807:1553..3296+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10807.519.1 ID=mRNA_H-paniculata_contig10807.519.1|Name=mRNA_H-paniculata_contig10807.519.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1744bp|location=Sequence derived from alignment at H-paniculata_contig10807:1553..3296+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGCAAATCGGCACACAAGGAACGATCTGTGGGACAACTGATGTGAGCTC
CGTTAAGGCCGTGAGAGAGTCGGGGTTACATTGGGGCGGCGCAAGTGCAT
CACGAGCGGGTCGTTTTATCTCCTGAAATGTGTACCTTGCATGGAGTTGC
AGATATTGGAATAATCTGAGCTCCAGGAGCTATGCCTACTCTGAATTTCA
ACAACCAGCAGTTGACCGACTAGCGCGTGTGGACCAGGAGTAGACTGGTA
CCAGGCATCAAACGAAATCGAAAGCTCGATTTATTACTATATCCTTGTAA
TTGACAGCACTTGAGTCAAGTCCTGAGGGTTGCATTACAGGATCTGCCAC
ACGAAGTGGTGGATTTACCAGAGTTCGTCGACAATTATTCATAGTTGCGG
CAGTCTTCCTGCGTGGCAGGCCATGCTGGTGGTACTGGATCTAAGTAGAA
TAAAGGCTAAACACTACGATTGCTACCTCTAACCTCAAACAATAACTAGA
TTGGAATGTGATTTTAATCCAGCTAACTCTTGAATGTACGAGAAACATTT
ATATAATATCAGGGCAGGCGCTCGGCCTACTTTGCCTTGTCTGGATGCTG
AATAGGATTTCGTTGTATTCTCACGGTTTCTGTGGTGGTGAACTACGCAG
GAGGGGTGCTCAGAGCATCAACTGACGAGGAGTGGCGAATGGGGGCTGAG
GAATCCTGACTTCGTACGGGTAGATTTGATCGAAGGGGTGCCTACATCTG
GGGACGACCAACCATTCGACCTCATCTTTGTCAGGTCCGTAGAATGCTGT
TAGAATCCAAGGCTTTTCATATGGTCACAAGGTCCGTACAATCTCACACA
CTGGTTGGAAGTGCAACACAAGAGGACAAGAATCCTACTTTGCTTCTCTC
AAATGACGGGAACAAAATGGTCACGAAATATAACATGACCCAAGTGCAAT
CGGTTTGCAGTGGTCTGAACCAGCACTGGTCAATGGCCTCACACGAGCGA
ACTGAGAGCCGTATCTGGGCCTGGTGATATGTAAAGGAGACCCGTAATGT
GCGGAACATGGGTAAATTCAACATCTGTATGAGTGCTCATGTAATGTCTG
ATAAAGTACCTCTTTGTGACTAGCGTACAGCTGTGTCGAGATTGCGGAAA
TATCAACATCTTCGCCCCTCGCTCCACCCTCTACCAACGAATATTTCAGG
GACATGATGCTCCATCTTCCCCCGCGGCACAACATGCGGGTGCTGAAGAA
CATTGAGGCAAGCGGGGCGCGTTTGTTCATGGCGTCCACATTCCTGGACG
GTGATGAGAATTTTGTGGCAGATACGTTCGTGCCAGCCCGCGGACACCGT
ATCAATCTCGCAAAAGCGCCATACTGTTTGCGGCCACCCGTCGCGCTCTT
TCACGATTCCTCCACGGGTTTCCCTGGTCACCGTATGGGATTGTGGGGGT
TGGATCGGGACAGACCACTTGTTGAAGGTGGGGATTGTAGCTTGAGTGCT
TGGAGCTGAAACCGGTACATTGCATGTTGTATATGTTGGTGGATTTCAAG
CTGCTCTCTGTTGCGAGTATGCTCTTCTAAGGCCCACAGGCGCACACACT
GATATCGTCGTCACGAGGTGTAGCTTCCGACAGTTTCAGGAAATATAGTG
TCGGTTCGTCGAAAGTCAATGCGGCTTTCGACAGTCACACTAAATTATAG
GACCGGTACTGGCAAGAACCTGGCATGAGAAGGGTGATTGTGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig10807:1553..3296+

>mRNA_H-paniculata_contig10807.519.1 ID=mRNA_H-paniculata_contig10807.519.1|Name=mRNA_H-paniculata_contig10807.519.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig10807:1553..3296+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGCTCCATCTTCCCCCGCGGCACAACATGCGGGTGCTGAAGAACAT
TGAGGCAAGCGGGGCGCGTTTGTTCATGGCGTCCACATTCCTGGACGGTG
ATGAGAATTTTGTGGCAGATACGTTCGTGCCAGCCCGCGGACACCGTATC
AATCTCGCAAAAGCGCCATACTGTTTGCGGCCACCCGTCGCGCTCTTTCA
CGATTCCTCCACGGGTTTCCCTGGTCACCGTATGGGATTGTGGGGGTTGG
ATCGGGACAGACCACTTGTTGAAGGTGGGGATTGTAGCTTGAGTGCTTGG
AGCTGAATGATGCTCCATCTTCCCCCGCGGCACAACATGCGGGTGCTGAA
GAACATTGAGGCAAGCGGGGCGCGTTTGTTCATGGCGTCCACATTCCTGG
ACGGTGATGAGAATTTTGTGGCAGATACGTTCGTGCCAGCCCGCGGACAC
CGTATCAATCTCGCAAAAGCGCCATACTGTTTGCGGCCACCCGTCGCGCT
CTTTCACGATTCCTCCACGGGTTTCCCTGGTCACCGTATGGGATTGTGGG
GGTTGGATCGGGACAGACCACTTGTTGAAGGTGGGGATTGTAGCTTGAGT
GCTTGGAGCTGA
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