mRNA_H-paniculata_contig20143.5190.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20143.5190.1
Unique NamemRNA_H-paniculata_contig20143.5190.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig20143.5190.1 vs. uniprot
Match: UPI000E6F524C (uncharacterized protein LOC113279956 n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6F524C)

HSP 1 Score: 73.9 bits (180), Expect = 3.740e-15
Identity = 37/69 (53.62%), Postives = 50/69 (72.46%), Query Frame = 1
Query:   46 AMDREMIELKEGGTFVETELPLGPKAIGSKWVLTWKTDQDGFILKPKARFVCPGNLQVAGVDYDDTFAP 252
            AM  E+  L+E GT+  TELP G KA+GSKW+ T K D++G +++ KAR V  GN QV G+DY++TFAP
Sbjct:   33 AMAEEIRALEEQGTWDLTELPPGKKALGSKWIYTEKYDENGKLVRLKARLVIFGNHQVEGLDYNETFAP 101          
BLAST of mRNA_H-paniculata_contig20143.5190.1 vs. uniprot
Match: UPI000E6F64D6 (uncharacterized protein LOC113273194 n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6F64D6)

HSP 1 Score: 76.6 bits (187), Expect = 1.840e-14
Identity = 38/69 (55.07%), Postives = 51/69 (73.91%), Query Frame = 1
Query:   46 AMDREMIELKEGGTFVETELPLGPKAIGSKWVLTWKTDQDGFILKPKARFVCPGNLQVAGVDYDDTFAP 252
            AM  E+  L+E GT+  TELP G KA+GSKW+ T K D++G +++ KARFV  GN QV G+DY++TFAP
Sbjct:  710 AMAEEIRALEEQGTWDLTELPPGKKALGSKWIYTEKYDENGTLVRLKARFVIFGNHQVEGLDYNETFAP 778          
BLAST of mRNA_H-paniculata_contig20143.5190.1 vs. uniprot
Match: UPI000E6F8969 (uncharacterized protein LOC113296259 n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6F8969)

HSP 1 Score: 74.3 bits (181), Expect = 1.180e-13
Identity = 37/69 (53.62%), Postives = 50/69 (72.46%), Query Frame = 1
Query:   46 AMDREMIELKEGGTFVETELPLGPKAIGSKWVLTWKTDQDGFILKPKARFVCPGNLQVAGVDYDDTFAP 252
            AM  E+  L+E GT+  TELP G KA+GSKW+ T K D++G +++ KAR V  GN QV G+DY++TFAP
Sbjct:  403 AMAEEIRALEEQGTWDLTELPPGKKALGSKWIYTEKYDENGSLVRLKARLVIFGNHQVEGLDYNETFAP 471          
BLAST of mRNA_H-paniculata_contig20143.5190.1 vs. uniprot
Match: A0A182GIT5_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GIT5_AEDAL)

HSP 1 Score: 73.9 bits (180), Expect = 1.580e-13
Identity = 35/69 (50.72%), Postives = 45/69 (65.22%), Query Frame = 1
Query:   46 AMDREMIELKEGGTFVETELPLGPKAIGSKWVLTWKTDQDGFILKPKARFVCPGNLQVAGVDYDDTFAP 252
            AMD EM  L+E GT+  T+LP G KA+G KW+   K D+DG +++ KAR V  G  Q  G DYD+ FAP
Sbjct:   12 AMDDEMTSLRENGTWQLTDLPPGRKAVGCKWIFKRKLDEDGNVVRYKARLVAQGFTQKFGTDYDEVFAP 80          
BLAST of mRNA_H-paniculata_contig20143.5190.1 vs. uniprot
Match: A0A6P6WUD4_COFAR (uncharacterized protein LOC113736273 n=1 Tax=Coffea arabica TaxID=13443 RepID=A0A6P6WUD4_COFAR)

HSP 1 Score: 68.9 bits (167), Expect = 3.880e-13
Identity = 35/74 (47.30%), Postives = 47/74 (63.51%), Query Frame = 1
Query:   31 SVFLEAMDREMIELKEGGTFVETELPLGPKAIGSKWVLTWKTDQDGFILKPKARFVCPGNLQVAGVDYDDTFAP 252
            S + EAM +E+  L++ G +    LP+G KA+GSKWV   K   DG I + KAR V  GN Q+ G+DY +TFAP
Sbjct:   33 SYWREAMRKEVEALEDNGIWTVATLPMGKKALGSKWVYKIKYHTDGTIERYKARLVVFGNYQIEGLDYTETFAP 106          
BLAST of mRNA_H-paniculata_contig20143.5190.1 vs. uniprot
Match: A0A6H5LAZ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAZ3_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 5.750e-13
Identity = 36/79 (45.57%), Postives = 52/79 (65.82%), Query Frame = 1
Query:    1 YRDVLEWKYKSVFLEAMDREMIELKEGGTFVET-ELPLGPKAIGSKWVLTWKTDQDGFILKPKARFVCPGNLQVAGVDY 234
            Y+DV+  KYK  +  AM +E+ +  + GTF +  ELP G KAIGSKWV +WKT++ G I+  KAR V  G  ++ G+D+
Sbjct:    3 YKDVMCSKYKVFWEAAMKKEIDDHDKTGTFTKVKELPDGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSEIPGIDF 81          
BLAST of mRNA_H-paniculata_contig20143.5190.1 vs. uniprot
Match: Q0ZCC5_POPTR (CCHC-type integrase n=1 Tax=Populus trichocarpa TaxID=3694 RepID=Q0ZCC5_POPTR)

HSP 1 Score: 71.2 bits (173), Expect = 1.480e-12
Identity = 36/72 (50.00%), Postives = 46/72 (63.89%), Query Frame = 1
Query:   37 FLEAMDREMIELKEGGTFVETELPLGPKAIGSKWVLTWKTDQDGFILKPKARFVCPGNLQVAGVDYDDTFAP 252
            +++A+  E+  ++  GT+  TELP   K IG KWV   K + DG I + KAR V  G  QVAGVDYDDTFAP
Sbjct: 1287 WIDAIKSEIDSIERNGTWKLTELPQNKKEIGVKWVFKTKFNPDGSIFRHKARLVVKGFAQVAGVDYDDTFAP 1358          
BLAST of mRNA_H-paniculata_contig20143.5190.1 vs. uniprot
Match: UPI000B8A7035 (uncharacterized protein LOC110788974 n=1 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8A7035)

HSP 1 Score: 70.9 bits (172), Expect = 1.980e-12
Identity = 36/70 (51.43%), Postives = 48/70 (68.57%), Query Frame = 1
Query:   43 EAMDREMIELKEGGTFVETELPLGPKAIGSKWVLTWKTDQDGFILKPKARFVCPGNLQVAGVDYDDTFAP 252
            +AM  E+  L+   T+V  +LP G KA+GSKWV T K D+DG +++ KAR V  GN QV G DY++TFAP
Sbjct:  533 DAMAAEIEALEGQATWVLEKLPPGKKALGSKWVYTEKKDEDGNLIRNKARLVFLGNHQVEGTDYNETFAP 602          
BLAST of mRNA_H-paniculata_contig20143.5190.1 vs. uniprot
Match: A0A6A5AP11_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AP11_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 2.050e-12
Identity = 29/65 (44.62%), Postives = 46/65 (70.77%), Query Frame = 1
Query:   58 EMIELKEGGTFVETELPLGPKAIGSKWVLTWKTDQDGFILKPKARFVCPGNLQVAGVDYDDTFAP 252
            E+ +L++ GT+   +LP+G KAIGS+W    KT+ DG +++ KAR VC G  QV G++Y +T++P
Sbjct:    8 ELKQLRDAGTWNIVDLPVGRKAIGSRWTYAKKTNSDGDVIRYKARLVCEGYSQVEGINYTNTYSP 72          
BLAST of mRNA_H-paniculata_contig20143.5190.1 vs. uniprot
Match: A0A6H5K088_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K088_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 2.080e-12
Identity = 38/79 (48.10%), Postives = 51/79 (64.56%), Query Frame = 1
Query:    1 YRDVLEWKYKSVFLEAMDREMIELKEGGTFVET-ELPLGPKAIGSKWVLTWKTDQDGFILKPKARFVCPGNLQVAGVDY 234
            Y+DV+  KYK  +  AM +E+    + GTF +  ELP G KAIGSKWV +WKT++ G I+  KAR V  G  QV G+D+
Sbjct:   58 YKDVMCSKYKIFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKARTVARGFFQVPGIDF 136          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20143.5190.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000E6F524C3.740e-1553.62uncharacterized protein LOC113279956 n=1 Tax=Papav... [more]
UPI000E6F64D61.840e-1455.07uncharacterized protein LOC113273194 n=1 Tax=Papav... [more]
UPI000E6F89691.180e-1353.62uncharacterized protein LOC113296259 n=1 Tax=Papav... [more]
A0A182GIT5_AEDAL1.580e-1350.72Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6P6WUD4_COFAR3.880e-1347.30uncharacterized protein LOC113736273 n=1 Tax=Coffe... [more]
A0A6H5LAZ3_9PHAE5.750e-1345.57Reverse transcriptase Ty1/copia-type domain-contai... [more]
Q0ZCC5_POPTR1.480e-1250.00CCHC-type integrase n=1 Tax=Populus trichocarpa Ta... [more]
UPI000B8A70351.980e-1251.43uncharacterized protein LOC110788974 n=1 Tax=Spina... [more]
A0A6A5AP11_9STRA2.050e-1244.62Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6H5K088_9PHAE2.080e-1248.10Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20143contigH-paniculata_contig20143:2554..2805 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score78.6
Seed ortholog evalue1.6e-12
Seed eggNOG ortholog5217.XP_007002288.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3NUZ7@4751,3UY7N@5204,3VFTM@5234,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelTremellales
Best eggNOG OGNA|NA|NA
Exons1
Model size252
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929517.8094478-CDS-H-paniculata_contig20143:2553..28051622929517.8094478-CDS-H-paniculata_contig20143:2553..2805Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20143 2554..2805 +
1691480895.597574-CDS-H-paniculata_contig20143:2553..28051691480895.597574-CDS-H-paniculata_contig20143:2553..2805Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20143 2554..2805 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20143.5190.1prot_H-paniculata_contig20143.5190.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20143 2554..2805 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20143.5190.1

>prot_H-paniculata_contig20143.5190.1 ID=prot_H-paniculata_contig20143.5190.1|Name=mRNA_H-paniculata_contig20143.5190.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=84bp
YRDVLEWKYKSVFLEAMDREMIELKEGGTFVETELPLGPKAIGSKWVLTW
KTDQDGFILKPKARFVCPGNLQVAGVDYDDTFAP
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mRNA from alignment at H-paniculata_contig20143:2554..2805+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20143.5190.1 ID=mRNA_H-paniculata_contig20143.5190.1|Name=mRNA_H-paniculata_contig20143.5190.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=252bp|location=Sequence derived from alignment at H-paniculata_contig20143:2554..2805+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACCGCGATGTACTAGAGTGGAAGTACAAGAGTGTCTTTCTAGAGGCGAT GGATAGGGAGATGATTGAACTGAAAGAAGGGGGTACGTTCGTAGAAACAG AACTACCCCTAGGACCGAAAGCCATAGGCTCTAAATGGGTACTAACTTGG AAGACAGACCAGGATGGTTTTATCTTAAAGCCCAAAGCTAGGTTTGTTTG TCCGGGAAACCTCCAAGTTGCAGGGGTAGACTATGATGATACATTCGCCC CC
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Coding sequence (CDS) from alignment at H-paniculata_contig20143:2554..2805+

>mRNA_H-paniculata_contig20143.5190.1 ID=mRNA_H-paniculata_contig20143.5190.1|Name=mRNA_H-paniculata_contig20143.5190.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at H-paniculata_contig20143:2554..2805+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACCGCGATGTACTAGAGTGGAAGTACAAGAGTGTCTTTCTAGAGGCGAT
GGATAGGGAGATGATTGAACTGAAAGAAGGGGGTACGTTCGTAGAAACAG
AACTACCCCTAGGACCGAAAGCCATAGGCTCTAAATGGGTACTAACTTGG
AAGACAGACCAGGATGGTTTTATCTTAAAGCCCAAAGCTAGGTTTGTTTG
TCCGGGAAACCTCCAAGTTGCAGGGGTAGACTATGATGATACATTCGCCC
CCTACCGCGATGTACTAGAGTGGAAGTACAAGAGTGTCTTTCTAGAGGCG
ATGGATAGGGAGATGATTGAACTGAAAGAAGGGGGTACGTTCGTAGAAAC
AGAACTACCCCTAGGACCGAAAGCCATAGGCTCTAAATGGGTACTAACTT
GGAAGACAGACCAGGATGGTTTTATCTTAAAGCCCAAAGCTAGGTTTGTT
TGTCCGGGAAACCTCCAAGTTGCAGGGGTAGACTATGATGATACATTCGC
CCCC
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