mRNA_H-paniculata_contig20137.5187.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20137.5187.1
Unique NamemRNA_H-paniculata_contig20137.5187.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20137.5187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20137contigH-paniculata_contig20137:2053..2669 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.5
Seed ortholog evalue3.5e-07
Seed eggNOG ortholog2880.D7FSR2
KEGG koko:K10532
KEGG ReactionR07815
KEGG Pathwayko00531,ko01100,ko04142,map00531,map01100,map04142
KEGG ModuleM00078
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001578,GO:0003008,GO:0005575,GO:0005623,GO:0005929,GO:0006935,GO:0006950,GO:0006970,GO:0006972,GO:0006996,GO:0007010,GO:0007017,GO:0007600,GO:0008150,GO:0009605,GO:0009628,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0030425,GO:0032501,GO:0035082,GO:0036477,GO:0040011,GO:0042221,GO:0042330,GO:0042995,GO:0043005,GO:0043025,GO:0043226,GO:0044085,GO:0044297,GO:0044463,GO:0044464,GO:0044782,GO:0050877,GO:0050896,GO:0060271,GO:0070925,GO:0071840,GO:0097447,GO:0097458,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1905515
EggNOG free text desc.non-motile cilium assembly
EggNOG OGsKOG2933@1,KOG2933@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-03_002840.1
EC2.3.1.78
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons2
Model size199
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929517.5113366-CDS-H-paniculata_contig20137:2052..22141622929517.5113366-CDS-H-paniculata_contig20137:2052..2214Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20137 2053..2214 -
1691480895.4267552-CDS-H-paniculata_contig20137:2052..22141691480895.4267552-CDS-H-paniculata_contig20137:2052..2214Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20137 2053..2214 -
1622929517.524958-CDS-H-paniculata_contig20137:2633..26691622929517.524958-CDS-H-paniculata_contig20137:2633..2669Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20137 2634..2669 -
1691480895.4394352-CDS-H-paniculata_contig20137:2633..26691691480895.4394352-CDS-H-paniculata_contig20137:2633..2669Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20137 2634..2669 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20137.5187.1prot_H-paniculata_contig20137.5187.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20137 2053..2669 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20137.5187.1

>prot_H-paniculata_contig20137.5187.1 ID=prot_H-paniculata_contig20137.5187.1|Name=mRNA_H-paniculata_contig20137.5187.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
KNANISPKLLAKAAVYSERCLAALRVGDTAKDGMPDGINFAGLLEGMAKA
LKGKVAEGKSAAHEVL
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mRNA from alignment at H-paniculata_contig20137:2053..2669-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20137.5187.1 ID=mRNA_H-paniculata_contig20137.5187.1|Name=mRNA_H-paniculata_contig20137.5187.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=617bp|location=Sequence derived from alignment at H-paniculata_contig20137:2053..2669- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAAACGCCAATATATCTCCGAAGCTTTTGGCGAAGGTGTGTACGGAGAT
CTGTGAGTCAGATGCGTCTCACGATATTCAACGGTGCAGCTGCGGAAAGT
TGGAAAAGGCACACTGATTGGCATCATGTTGTAGTAATTATATAGTAGCA
CTTGTCGTTTCGACTGCATCATTAGTGTCGTGTAGAGTTTGTCGATTGTT
GACGTTATTTGTTGATAGCTTGGATTAGCATGTACGTACATATATTGTGA
TGCGTGTGTATTTTGTCTCACAGTGGTTGTATTTCATCACTAGTGGTCAA
CCGGAAAATGAACATTGCTCGACGGTGGCAGGAAAGCATGGCTGAAACCG
AAGTGTTTTACCCGGCATGACTTTGACTTTTGAAAGCTGTCTTTCTCGTG
AGTTCCTCTCATTATACTCTGTTTGTTTCGGTTGTTCCACCCTTTGGACT
TGCAGGCCGCCGTGTACTCGGAACGGTGTTTGGCAGCGCTAAGGGTCGGG
GACACGGCCAAGGACGGGATGCCAGACGGAATCAACTTCGCAGGACTACT
AGAGGGTATGGCAAAAGCTCTCAAGGGTAAGGTTGCCGAGGGGAAAAGCG
CCGCGCATGAAGTGCTT
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Coding sequence (CDS) from alignment at H-paniculata_contig20137:2053..2669-

>mRNA_H-paniculata_contig20137.5187.1 ID=mRNA_H-paniculata_contig20137.5187.1|Name=mRNA_H-paniculata_contig20137.5187.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig20137:2053..2669- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAAACGCCAATATATCTCCGAAGCTTTTGGCGAAGAAAAACGCCAATAT
ATCTCCGAAGCTTTTGGCGAAGGCCGCCGTGTACTCGGAACGGTGTTTGG
CAGCGCTAAGGGTCGGGGACACGGCCAAGGACGGGATGCCAGACGGAATC
AACTTCGCAGGACTACTAGAGGGTATGGCAAAAGCTCTCAAGGGTAAGGT
TGCCGAGGGGAAAAGCGCCGCGCATGAAGTGCTTGCCGCCGTGTACTCGG
AACGGTGTTTGGCAGCGCTAAGGGTCGGGGACACGGCCAAGGACGGGATG
CCAGACGGAATCAACTTCGCAGGACTACTAGAGGGTATGGCAAAAGCTCT
CAAGGGTAAGGTTGCCGAGGGGAAAAGCGCCGCGCATGAAGTGCTT
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