mRNA_H-paniculata_contig20133.5185.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20133.5185.1
Unique NamemRNA_H-paniculata_contig20133.5185.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20133.5185.1 vs. uniprot
Match: D8LAZ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAZ2_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 1.560e-8
Identity = 28/48 (58.33%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    7 ASLVTHYQSDYWSSRRKELKQMEAAAAERKKKYGDTGMRFTAQAMAGK 150
            A  ++  +++YW++RRKEL  +EAAAAERKKKY   GM+FTAQA+A K
Sbjct:  138 AQELSENKAEYWATRRKELHDVEAAAAERKKKYAGAGMQFTAQALANK 185
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20133.5185.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LAZ2_ECTSI1.560e-858.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20133contigH-paniculata_contig20133:4423..4575 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_005870.1
Exons1
Model size153
Cds size153
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929517.4138854-CDS-H-paniculata_contig20133:4422..45751622929517.4138854-CDS-H-paniculata_contig20133:4422..4575Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20133 4423..4575 -
1691480895.404871-CDS-H-paniculata_contig20133:4422..45751691480895.404871-CDS-H-paniculata_contig20133:4422..4575Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20133 4423..4575 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20133.5185.1prot_H-paniculata_contig20133.5185.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20133 4423..4575 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20133.5185.1

>prot_H-paniculata_contig20133.5185.1 ID=prot_H-paniculata_contig20133.5185.1|Name=mRNA_H-paniculata_contig20133.5185.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=51bp
MPASLVTHYQSDYWSSRRKELKQMEAAAAERKKKYGDTGMRFTAQAMAGK
*
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mRNA from alignment at H-paniculata_contig20133:4423..4575-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20133.5185.1 ID=mRNA_H-paniculata_contig20133.5185.1|Name=mRNA_H-paniculata_contig20133.5185.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=153bp|location=Sequence derived from alignment at H-paniculata_contig20133:4423..4575- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTGCTTCTCTGGTAACTCATTATCAGAGCGATTATTGGTCAAGTCG
GCGGAAAGAGCTTAAGCAGATGGAAGCGGCGGCGGCGGAAAGGAAGAAAA
AGTACGGCGATACAGGGATGCGCTTCACGGCACAAGCCATGGCTGGAAAA
TGA
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Coding sequence (CDS) from alignment at H-paniculata_contig20133:4423..4575-

>mRNA_H-paniculata_contig20133.5185.1 ID=mRNA_H-paniculata_contig20133.5185.1|Name=mRNA_H-paniculata_contig20133.5185.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=306bp|location=Sequence derived from alignment at H-paniculata_contig20133:4423..4575- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTGCTTCTCTGGTAACTCATTATCAGAGCGATTATTGGTCAAGTCG
GCGGAAAGAGCTTAAGCAGATGGAAGCGGCGGCGGCGGAAAGGAAGAAAA
AGTACGGCGATACAGGGATGCGCTTCACGGCACAAGCCATGGCTGGAAAA
TGAATGCCTGCTTCTCTGGTAACTCATTATCAGAGCGATTATTGGTCAAG
TCGGCGGAAAGAGCTTAAGCAGATGGAAGCGGCGGCGGCGGAAAGGAAGA
AAAAGTACGGCGATACAGGGATGCGCTTCACGGCACAAGCCATGGCTGGA
AAATGA
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