mRNA_H-paniculata_contig10804.518.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10804.518.1
Unique NamemRNA_H-paniculata_contig10804.518.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig10804.518.1 vs. uniprot
Match: D7FIT2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIT2_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 2.280e-13
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:   46 AAALDASKKFGPQSQEAKMAWDIYEEVAAADNSIATRVTLDEDCDV 183
            AAAL A+K+FG  S EA++AWD YEEVAAADN+IATR TLDEDCDV
Sbjct:   54 AAALKATKEFGATSPEARLAWDTYEEVAAADNTIATRATLDEDCDV 99
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BLAST of mRNA_H-paniculata_contig10804.518.1 vs. uniprot
Match: A0A1Z5JBS1_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JBS1_FISSO)

HSP 1 Score: 55.5 bits (132), Expect = 1.330e-7
Identity = 25/44 (56.82%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:   49 AALDASKKFGPQSQEAKMAWDIYEEVAAADNSIATRVTLDEDCD 180
            AA+ ASK +GP S EA++AW++ E++AA+DNS A++ TLDE+CD
Sbjct:   45 AAVKASKTYGPTSPEARVAWEVVEDIAASDNSAASKGTLDEECD 88
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BLAST of mRNA_H-paniculata_contig10804.518.1 vs. uniprot
Match: B8BQS1_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQS1_THAPS)

HSP 1 Score: 48.5 bits (114), Expect = 3.720e-5
Identity = 23/39 (58.97%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:   49 AALDASKKFGPQSQEAKMAWDIYEEVAAADNSIATRVTL 165
            AALDASKKFG  S EA++ WDI EE+ A+DNS+A++  +
Sbjct:   39 AALDASKKFGSTSSEARVLWDIVEEMDASDNSVASKAPI 77
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BLAST of mRNA_H-paniculata_contig10804.518.1 vs. uniprot
Match: A0A7S2HHM1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HHM1_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 9.750e-5
Identity = 25/38 (65.79%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:   37 EAEAAALDASKKFGPQSQEAKMAWDIYEEVAAADNSIA 150
            EA  AAL+ASKK+GP S+EA++AWDI EE+ A+DNS A
Sbjct:   53 EAIEAALEASKKYGPTSKEARVAWDIVEEMDASDNSNA 90
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10804.518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FIT2_ECTSI2.280e-1376.09Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1Z5JBS1_FISSO1.330e-756.82Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
B8BQS1_THAPS3.720e-558.97Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S2HHM1_9STRA9.750e-565.79Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10804contigH-paniculata_contig10804:234..416 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size183
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928785.4129527-CDS-H-paniculata_contig10804:233..4161622928785.4129527-CDS-H-paniculata_contig10804:233..416Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10804 234..416 -
1691480619.0132437-CDS-H-paniculata_contig10804:233..4161691480619.0132437-CDS-H-paniculata_contig10804:233..416Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10804 234..416 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10804.518.1prot_H-paniculata_contig10804.518.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10804 234..416 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10804.518.1

>prot_H-paniculata_contig10804.518.1 ID=prot_H-paniculata_contig10804.518.1|Name=mRNA_H-paniculata_contig10804.518.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
IFSARLPSLSNQEAEAAALDASKKFGPQSQEAKMAWDIYEEVAAADNSIA
TRVTLDEDCDV
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mRNA from alignment at H-paniculata_contig10804:234..416-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10804.518.1 ID=mRNA_H-paniculata_contig10804.518.1|Name=mRNA_H-paniculata_contig10804.518.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=183bp|location=Sequence derived from alignment at H-paniculata_contig10804:234..416- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTTTCTCGGCCCGTTTACCCTCCCTGTCCAATCAGGAAGCAGAGGCAGC
CGCGCTGGATGCATCGAAGAAGTTCGGTCCGCAATCACAGGAAGCCAAGA
TGGCTTGGGATATTTATGAGGAGGTAGCGGCAGCAGACAATTCAATCGCA
ACCAGGGTTACCCTCGACGAGGACTGCGACGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig10804:234..416-

>mRNA_H-paniculata_contig10804.518.1 ID=mRNA_H-paniculata_contig10804.518.1|Name=mRNA_H-paniculata_contig10804.518.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at H-paniculata_contig10804:234..416- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTTTCTCGGCCCGTTTACCCTCCCTGTCCAATCAGGAAGCAGAGGCAGC
CGCGCTGGATGCATCGAAGAAGTTCGGTCCGCAATCACAGGAAGCCAAGA
TGGCTTGGGATATTTATGAGGAGGTAGCGGCAGCAGACAATTCAATCGCA
ACCAGGGTTACCCTCGACGAGGACTGCGACGTGATTTTCTCGGCCCGTTT
ACCCTCCCTGTCCAATCAGGAAGCAGAGGCAGCCGCGCTGGATGCATCGA
AGAAGTTCGGTCCGCAATCACAGGAAGCCAAGATGGCTTGGGATATTTAT
GAGGAGGTAGCGGCAGCAGACAATTCAATCGCAACCAGGGTTACCCTCGA
CGAGGACTGCGACGTG
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