mRNA_H-paniculata_contig20115.5180.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20115.5180.1
Unique NamemRNA_H-paniculata_contig20115.5180.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20115.5180.1 vs. uniprot
Match: D8LIA7_ECTSI (Lissencephaly type-1-like homology (LisH) motif-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIA7_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.400e-18
Identity = 50/88 (56.82%), Postives = 56/88 (63.64%), Query Frame = 1 
Query:    1 QSGDPIGDDNPPLALPNGRVYGRRAIQAMTRHAARESG--------------VGTEMNMSG-----VVTCPSTGETFRSKNLRSVYII 207
            QSGDPIGDDNPPL LPNGRVYG RAI+A+ R AA  +G              VG +  + G     VVTCPSTG+TFR   LRSVYII
Sbjct:  369 QSGDPIGDDNPPLVLPNGRVYGSRAIRALARPAAGTTGAGAGDAAAAAGSGIVGFDGTVGGTVGASVVTCPSTGQTFRFDQLRSVYII 456
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BLAST of mRNA_H-paniculata_contig20115.5180.1 vs. uniprot
Match: A0A0N0PAX5_PAPMA (E3 ubiquitin-protein transferase MAEA n=4 Tax=Papilio TaxID=7145 RepID=A0A0N0PAX5_PAPMA)

HSP 1 Score: 55.5 bits (132), Expect = 2.910e-7
Identity = 26/68 (38.24%), Postives = 38/68 (55.88%), Query Frame = 1 
Query:    4 SGDPIGDDNPPLALPNGRVYGRRAIQAMTRHAARESGVGTEMNMSGVVTCPSTGETFRSKNLRSVYII 207
            S +P+ + NPP+ALPNG+VYG +A++ M             M   G +TCP T E F  K +  VY++
Sbjct:  353 SNEPLNEHNPPMALPNGQVYGEKALKEM-------------MKEHGSITCPKTKEVFCMKRVEKVYVM 407
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BLAST of mRNA_H-paniculata_contig20115.5180.1 vs. uniprot
Match: UPI001884B430 (E3 ubiquitin-protein transferase MAEA-like isoform X1 n=2 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI001884B430)

HSP 1 Score: 55.1 bits (131), Expect = 3.970e-7
Identity = 27/68 (39.71%), Postives = 37/68 (54.41%), Query Frame = 1 
Query:    4 SGDPIGDDNPPLALPNGRVYGRRAIQAMTRHAARESGVGTEMNMSGVVTCPSTGETFRSKNLRSVYII 207
            SG PI + NPP+ALPNG VYG+ A+Q++             + M G V CP T E F    L  V+++
Sbjct:  344 SGKPIDEHNPPMALPNGNVYGKLALQSLA------------VEMKGRVVCPRTQEVFGESQLEKVFVM 399
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BLAST of mRNA_H-paniculata_contig20115.5180.1 vs. uniprot
Match: A0A068RHE9_9FUNG (Protein n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A068RHE9_9FUNG)

HSP 1 Score: 53.5 bits (127), Expect = 1.390e-6
Identity = 28/67 (41.79%), Postives = 39/67 (58.21%), Query Frame = 1 
Query:    4 SGDPIGDDNPPLALPNGRVYGRRAIQAMTRHAARESGVGTEMNMSGVVTCPSTGETFRSKNLRSVYI 204
            SG  + +DNPPL LPNGRVY   ++  M   AA+           GV+TCP TG+ FR ++ R V++
Sbjct:  341 SGKIMNEDNPPLLLPNGRVYSYESLHDM---AAKND---------GVITCPRTGDVFRIEDTRKVFV 395
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BLAST of mRNA_H-paniculata_contig20115.5180.1 vs. uniprot
Match: A0A1Y3B673_EURMA (Macrophage erythroblast attacher-like protein (Fragment) n=1 Tax=Euroglyphus maynei TaxID=6958 RepID=A0A1Y3B673_EURMA)

HSP 1 Score: 51.2 bits (121), Expect = 1.460e-6
Identity = 24/68 (35.29%), Postives = 38/68 (55.88%), Query Frame = 1 
Query:    4 SGDPIGDDNPPLALPNGRVYGRRAIQAMTRHAARESGVGTEMNMSGVVTCPSTGETFRSKNLRSVYII 207
            SG+P+ ++N PL LPNG VYG ++++ M              +  G +TCP T E+F  K +  VY++
Sbjct:   57 SGEPMNENNQPLMLPNGYVYGEKSLRKMAD------------DNDGKITCPRTNESFNFKAIEKVYVM 112
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BLAST of mRNA_H-paniculata_contig20115.5180.1 vs. uniprot
Match: A0A316ZDU3_9BASI (Uncharacterized protein n=1 Tax=Tilletiopsis washingtonensis TaxID=58919 RepID=A0A316ZDU3_9BASI)

HSP 1 Score: 53.1 bits (126), Expect = 1.930e-6
Identity = 29/67 (43.28%), Postives = 37/67 (55.22%), Query Frame = 1 
Query:    4 SGDPIGDDNPPLALPNGRVYGRRAIQAMTRHAARESGVGTEMNMSGVVTCPSTGETFRSKNLRSVYI 204
            SG  + +++PPL LPNGRVY R A+Q M              N  G VTCP TG+TF   + R V+I
Sbjct:  477 SGRVMDENDPPLCLPNGRVYSRTALQEMAT-----------ANAYGHVTCPRTGQTFPYTSARKVFI 532
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BLAST of mRNA_H-paniculata_contig20115.5180.1 vs. uniprot
Match: A0A1X2GYH3_9FUNG (Uncharacterized protein n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2GYH3_9FUNG)

HSP 1 Score: 52.8 bits (125), Expect = 2.600e-6
Identity = 26/67 (38.81%), Postives = 38/67 (56.72%), Query Frame = 1 
Query:    4 SGDPIGDDNPPLALPNGRVYGRRAIQAMTRHAARESGVGTEMNMSGVVTCPSTGETFRSKNLRSVYI 204
            +G  + +DNPPL LPNGRVY   A+  M   +            +G VTCP TG+ FR ++++ V+I
Sbjct:  341 TGHIMNEDNPPLMLPNGRVYSLEALTDMAEQS------------NGFVTCPKTGQMFRLEDVKKVFI 395
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BLAST of mRNA_H-paniculata_contig20115.5180.1 vs. uniprot
Match: A0A1X2IY48_9FUNG (CTLH/CRA C-terminal to lish motif domain-domain-containing protein n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2IY48_9FUNG)

HSP 1 Score: 52.4 bits (124), Expect = 3.550e-6
Identity = 25/67 (37.31%), Postives = 38/67 (56.72%), Query Frame = 1 
Query:    4 SGDPIGDDNPPLALPNGRVYGRRAIQAMTRHAARESGVGTEMNMSGVVTCPSTGETFRSKNLRSVYI 204
            SG  + +DNPP+ LPNGRVY   A++ M   +            +GV+ CP TG+TF   +L+ V++
Sbjct:  341 SGRIMNEDNPPMLLPNGRVYSLEALKEMASQS------------NGVIICPRTGDTFSLDDLKKVFV 395
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BLAST of mRNA_H-paniculata_contig20115.5180.1 vs. uniprot
Match: A0A8H7QBB4_9FUNG (Uncharacterized protein n=2 Tax=Umbelopsis TaxID=64561 RepID=A0A8H7QBB4_9FUNG)

HSP 1 Score: 52.0 bits (123), Expect = 4.860e-6
Identity = 27/67 (40.30%), Postives = 39/67 (58.21%), Query Frame = 1 
Query:    4 SGDPIGDDNPPLALPNGRVYGRRAIQAMTRHAARESGVGTEMNMSGVVTCPSTGETFRSKNLRSVYI 204
            SG  I ++NPP+ LPNGRVY   ++QA+   A++ +         G +TCP TG+TF     R +YI
Sbjct:  341 SGKKIDENNPPMLLPNGRVY---SLQALEEMASKNN---------GYITCPRTGDTFELVETRKLYI 395
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BLAST of mRNA_H-paniculata_contig20115.5180.1 vs. uniprot
Match: A0A1C7NDU9_9FUNG (Macrophage erythroblast attacher n=1 Tax=Choanephora cucurbitarum TaxID=101091 RepID=A0A1C7NDU9_9FUNG)

HSP 1 Score: 51.6 bits (122), Expect = 6.650e-6
Identity = 25/67 (37.31%), Postives = 37/67 (55.22%), Query Frame = 1 
Query:    4 SGDPIGDDNPPLALPNGRVYGRRAIQAMTRHAARESGVGTEMNMSGVVTCPSTGETFRSKNLRSVYI 204
            SG  + +DNPP+ LPNGRVY  +A+Q M             +  +G +TCP TG+ +    L+ V+I
Sbjct:  344 SGKIMNEDNPPMLLPNGRVYSLQALQDMA------------LKSNGKITCPRTGDVYSLDQLKKVFI 398
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20115.5180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIA7_ECTSI1.400e-1856.82Lissencephaly type-1-like homology (LisH) motif-co... [more]
A0A0N0PAX5_PAPMA2.910e-738.24E3 ubiquitin-protein transferase MAEA n=4 Tax=Papi... [more]
UPI001884B4303.970e-739.71E3 ubiquitin-protein transferase MAEA-like isoform... [more]
A0A068RHE9_9FUNG1.390e-641.79Protein n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A... [more]
A0A1Y3B673_EURMA1.460e-635.29Macrophage erythroblast attacher-like protein (Fra... [more]
A0A316ZDU3_9BASI1.930e-643.28Uncharacterized protein n=1 Tax=Tilletiopsis washi... [more]
A0A1X2GYH3_9FUNG2.600e-638.81Uncharacterized protein n=1 Tax=Hesseltinella vesi... [more]
A0A1X2IY48_9FUNG3.550e-637.31CTLH/CRA C-terminal to lish motif domain-domain-co... [more]
A0A8H7QBB4_9FUNG4.860e-640.30Uncharacterized protein n=2 Tax=Umbelopsis TaxID=6... [more]
A0A1C7NDU9_9FUNG6.650e-637.31Macrophage erythroblast attacher n=1 Tax=Choanepho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20115contigH-paniculata_contig20115:4358..4567 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.8
Seed ortholog evalue2.2e-15
Seed eggNOG ortholog2880.D8LIA7
Preferred nameMAEA
KEGG koko:K03245,ko:K14399,ko:K18624
KEGG Pathwayko03013,ko03015,map03013,map03015
Hectar predicted targeting categoryother localisation
GOsGO:0002262,GO:0002376,GO:0002520,GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005819,GO:0005826,GO:0005829,GO:0005856,GO:0005886,GO:0005887,GO:0005938,GO:0006109,GO:0006111,GO:0006508,GO:0006511,GO:0006807,GO:0006996,GO:0007010,GO:0007155,GO:0007275,GO:0007346,GO:0008092,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010498,GO:0010675,GO:0010677,GO:0010906,GO:0010941,GO:0015629,GO:0015630,GO:0016020,GO:0016021,GO:0016043,GO:0016363,GO:0019222,GO:0019538,GO:0019941,GO:0022610,GO:0030097,GO:0030099,GO:0030154,GO:0030163,GO:0030218,GO:0030863,GO:0030864,GO:0031224,GO:0031226,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032153,GO:0032155,GO:0032501,GO:0032502,GO:0032991,GO:0033032,GO:0033033,GO:0034101,GO:0034399,GO:0034657,GO:0042592,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043255,GO:0043353,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044459,GO:0044464,GO:0045721,GO:0045912,GO:0048468,GO:0048513,GO:0048519,GO:0048523,GO:0048534,GO:0048731,GO:0048821,GO:0048822,GO:0048856,GO:0048869,GO:0048872,GO:0050789,GO:0050794,GO:0051603,GO:0051726,GO:0060548,GO:0061515,GO:0062012,GO:0062014,GO:0065007,GO:0065008,GO:0070013,GO:0070938,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0099568,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.negative regulation of gluconeogenesis
EggNOG OGsKOG0396@1,KOG0396@2759
EC2.7.1.78
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03012,ko03019,ko04812
Exons1
Model size210
Cds size210
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929517.115736-CDS-H-paniculata_contig20115:4357..45671622929517.115736-CDS-H-paniculata_contig20115:4357..4567Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20115 4358..4567 -
1691480895.3131328-CDS-H-paniculata_contig20115:4357..45671691480895.3131328-CDS-H-paniculata_contig20115:4357..4567Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20115 4358..4567 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20115.5180.1prot_H-paniculata_contig20115.5180.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20115 4358..4567 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20115.5180.1

>prot_H-paniculata_contig20115.5180.1 ID=prot_H-paniculata_contig20115.5180.1|Name=mRNA_H-paniculata_contig20115.5180.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp
QSGDPIGDDNPPLALPNGRVYGRRAIQAMTRHAARESGVGTEMNMSGVVT
CPSTGETFRSKNLRSVYII*
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mRNA from alignment at H-paniculata_contig20115:4358..4567-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20115.5180.1 ID=mRNA_H-paniculata_contig20115.5180.1|Name=mRNA_H-paniculata_contig20115.5180.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=210bp|location=Sequence derived from alignment at H-paniculata_contig20115:4358..4567- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTCCGGCGATCCGATTGGAGACGACAATCCGCCTTTGGCGCTACCCAA
CGGCAGGGTGTACGGTAGAAGGGCAATTCAGGCGATGACGAGGCATGCCG
CGCGGGAGAGCGGGGTTGGGACTGAAATGAATATGAGCGGTGTTGTTACG
TGTCCCTCCACGGGGGAAACATTTCGTTCTAAGAATCTTCGAAGTGTGTA
TATAATTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig20115:4358..4567-

>mRNA_H-paniculata_contig20115.5180.1 ID=mRNA_H-paniculata_contig20115.5180.1|Name=mRNA_H-paniculata_contig20115.5180.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig20115:4358..4567- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTCCGGCGATCCGATTGGAGACGACAATCCGCCTTTGGCGCTACCCAA
CGGCAGGGTGTACGGTAGAAGGGCAATTCAGGCGATGACGAGGCATGCCG
CGCGGGAGAGCGGGGTTGGGACTGAAATGAATATGAGCGGTGTTGTTACG
TGTCCCTCCACGGGGGAAACATTTCGTTCTAAGAATCTTCGAAGTGTGTA
TATAATTTGACAGTCCGGCGATCCGATTGGAGACGACAATCCGCCTTTGG
CGCTACCCAACGGCAGGGTGTACGGTAGAAGGGCAATTCAGGCGATGACG
AGGCATGCCGCGCGGGAGAGCGGGGTTGGGACTGAAATGAATATGAGCGG
TGTTGTTACGTGTCCCTCCACGGGGGAAACATTTCGTTCTAAGAATCTTC
GAAGTGTGTATATAATTTGA
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