mRNA_H-paniculata_contig20109.5179.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig20109.5179.1 vs. uniprot
Match: A0A6H5K2Q3_9PHAE (GPN-loop GTPase 3 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K2Q3_9PHAE) HSP 1 Score: 407 bits (1047), Expect = 3.290e-140 Identity = 217/296 (73.31%), Postives = 233/296 (78.72%), Query Frame = 1
Query: 1 DLISLEDAMEELELGPNGGLVYCMEYLLDNMDWLKDELDKFDDDEYIIFDCPGQVELYSHVPVMRNVLDQLKSWSYNVCAVFLLDATFITDPAKFVSGALLSLSAMVQLELPHLNVLTKCDLADRAEVERFLDTDNAALLSMHYPQGQRDFHAGTAPFDNGREREGEEKGDGE------------------GEQEGGETRAAXXXXXXXXXPRGLFGDGNEGVQREAGY-GGRRGTLPKMARLTEAISSVLDDYTMVNFIPLDITDEEDIALVLQHADYIIQYGEDLEPKQPKDDV 831
DLISLEDAMEELELGPNGGLVYCMEYLLDNMDWLKDELDKFDDDEYIIFDCPGQVELYSHVPVMRNVLDQLKSW+YNVCAVFLLDATFITDPAKF+SGALLSLSAMVQLELPHLNVLTKCDLADR+EVERFLDT+NAAL+SMHYPQ QR H GTAPF+ G ER GEE GE+ A PRG + + + G G +RG LP++ARLTEAIS VLDDYTMVNF+PLDI DEEDIALVL HADYI+QYGEDLEPKQPKDD+
Sbjct: 56 DLISLEDAMEELELGPNGGLVYCMEYLLDNMDWLKDELDKFDDDEYIIFDCPGQVELYSHVPVMRNVLDQLKSWNYNVCAVFLLDATFITDPAKFMSGALLSLSAMVQLELPHLNVLTKCDLADRSEVERFLDTENAALISMHYPQAQRGVHFGTAPFNRG-ERGGEEDXXXXXXXXXXXXXXXXXXXXXXGEESADVGTGATTAQREELQPRGRL----QVLGAQGGVEGAQRGPLPRLARLTEAISGVLDDYTMVNFLPLDIRDEEDIALVLHHADYIVQYGEDLEPKQPKDDI 346
BLAST of mRNA_H-paniculata_contig20109.5179.1 vs. uniprot
Match: A0A835YPS9_9STRA (GPN-loop GTPase 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPS9_9STRA) HSP 1 Score: 292 bits (747), Expect = 7.010e-95 Identity = 157/293 (53.58%), Postives = 196/293 (66.89%), Query Frame = 1
Query: 1 DLISLEDAMEELELGPNGGLVYCMEYLLDNMDWLKDELDKFDDDEYIIFDCPGQVELYS----------------HVPVMRNVLDQLKSWSYNVCAVFLLDATFITDPAKFVSGALLSLSAMVQLELPHLNVLTKCDLADRAEVERFLDTDNAALLSMHYPQGQRDFHAGTAPFDNGREREGEEKGDGEGEQEGGETRAAXXXXXXXXXPRGLFGDGNEGVQREAGYGGRRGTLPKMARLTEAISSVLDDYTMVNFIPLDITDEEDIALVLQHADYIIQYGEDLEPKQPKDDV 831
DLI+L D MEELELGPNGGLVYCMEYLLDN+DWLKDELD +DDDEYI+FDCPGQVELYS H+PVM+ +L+ + W Y VC V+ LDATF+ DPAKF+SG LLSLSAMVQLELPH+NVLTKCDLAD EVE+FLD D+AAL SMH + R+R G E+G G+G G A +G+ + A ++ LP++ RLT AI+ ++D+++MV FIP+DI+D++ +ALVLQHAD+I QYGE LEPK P D+
Sbjct: 55 DLITLADVMEELELGPNGGLVYCMEYLLDNVDWLKDELDNYDDDEYIVFDCPGQVELYSYEXXXXXXXXXXXXXXHIPVMKRLLEHFRYWGYTVCGVYALDATFMGDPAKFISGTLLSLSAMVQLELPHINVLTKCDLADMEEVEKFLDLDSAALASMH-----------ELATRSSRQRLGGEQG-GQGAVGGAAASDAARQ------------EGSH-IAAPASSSAQQRALPRLERLTAAIAGIIDEFSMVGFIPMDISDDQSVALVLQHADHITQYGEGLEPKDPDDEA 322
BLAST of mRNA_H-paniculata_contig20109.5179.1 vs. uniprot
Match: A0A7S2XYS1_9STRA (GPN-loop GTPase 3 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYS1_9STRA) HSP 1 Score: 265 bits (678), Expect = 2.710e-85 Identity = 142/280 (50.71%), Postives = 176/280 (62.86%), Query Frame = 1
Query: 1 DLISLEDAMEELELGPNGGLVYCMEYLLDNMDWLKDELDKFDDDEYIIFDCPGQVELYSHVPVMRNVLDQLKSWSYNVCAVFLLDATFITDPAKFVSGALLSLSAMVQLELPHLNVLTKCDLADRAEVERFLDTDNAALLSMHYPQGQRDFHAGTAPFDNGREREGEEKGDGEGEQEGGETRAAXXXXXXXXXPRGLFGDGNEGVQREAGYGGRRGTL----PKMARLTEAISSVLDDYTMVNFIPLDITDEEDIALVLQHADYIIQYGEDLEPKQPKDD 828
DLIS++D MEEL GPNG LVYCMEYLL+NMDWL+DELD++ DDEYIIFDCPGQVELYSH+PVMR+V+D+LK W YNVC VFL+D+ + DP K +SG L+SLSAMVQLELPH+NVLTKCDL D+ ++ F + +S+ + V GG GTL K+ARLT+AI SV+DD+TMV+F+PLD+ DE+ I LVL HAD++IQYGEDLEPK+PKDD
Sbjct: 48 DLISVDDVMEELGYGPNGALVYCMEYLLENMDWLRDELDEYGDDEYIIFDCPGQVELYSHIPVMRDVVDRLKMWDYNVCGVFLVDSLVVGDPMKLLSGTLISLSAMVQLELPHVNVLTKCDLVDKEILDNFFEE-----ISVR-----------------------------------------------------------QAVHNSQAVGG--GTLLRRNQKLARLTDAICSVVDDFTMVSFVPLDLRDEDSIGLVLAHADHVIQYGEDLEPKEPKDD 261
BLAST of mRNA_H-paniculata_contig20109.5179.1 vs. uniprot
Match: A0A6U0IL03_9STRA (GPN-loop GTPase 3 n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0IL03_9STRA) HSP 1 Score: 246 bits (629), Expect = 4.420e-77 Identity = 134/271 (49.45%), Postives = 179/271 (66.05%), Query Frame = 1
Query: 1 DLISLEDAMEELELGPNGGLVYCMEYLLDNMDWLKDELDKFDDDEYIIFDCPGQVELYSHVPVMRNVLDQLKSWSY--NVCAVFLLDATFITDPAKFVSGALLSLSAMVQLELPHLNVLTKCDLADRAEVERFLDTDNAALLSMHYPQGQRDFHAGTAPFDNGREREGEEKGDGEGEQEGGETRAAXXXXXXXXXPRGLFGDGNEGVQREAGYGGRRGTLPKMARLTEAISSVLDDYTMVNFIPLDITDEEDIALVLQHADYIIQYGEDLE 807
DLIS++D MEEL LGPNGGL+YCMEYLL+N+DWL D L++FDDDEY+I DCPGQ+ELY+HVPVMR ++D +++ Y ++ +VF++DATF+ D KF+SG+LLSLSAM+ LELPH+NVL+KCDL D+ V+ L+T++A L + +R F+ G E G + A+ + E +R A RR K RLTEAISS+LDD++MV+F+PLDITDEE I LVL D++IQYGED E
Sbjct: 61 DLISVDDVMEELGLGPNGGLIYCMEYLLENLDWLLDNLNQFDDDEYLIVDCPGQIELYTHVPVMRRIIDAMRTAGYASDMVSVFIVDATFVADAPKFISGSLLSLSAMIALELPHVNVLSKCDLVDKERVDEILETESAIQLWEIEDRARRREELAVEAFERGESMEPYLAG----------SSASKGFEPGEKLVKANDTPSKESQKRSAAIEHRR---RKRDRLTEAISSLLDDFSMVSFMPLDITDEESIDLVLMTVDHVIQYGEDSE 318
BLAST of mRNA_H-paniculata_contig20109.5179.1 vs. uniprot
Match: A0A024U8U1_9STRA (GPN-loop GTPase 3 n=7 Tax=Aphanomyces TaxID=100860 RepID=A0A024U8U1_9STRA) HSP 1 Score: 243 bits (620), Expect = 1.100e-76 Identity = 126/278 (45.32%), Postives = 167/278 (60.07%), Query Frame = 1
Query: 1 DLISLEDAMEELELGPNGGLVYCMEYLLDNMDWLKDELDKFDDDEYIIFDCPGQVELYSHVPVMRNVLDQLKSWSYNVCAVFLLDATFITDPAKFVSGALLSLSAMVQLELPHLNVLTKCDLADRAEVERFLDTDNAALLSMHYPQGQRDFHAGTAPFDNGREREGEEKGDGEGEQEGGETRAAXXXXXXXXXPRGLFGDGNEGVQREAGYGGRRGTLPKMARLTEAISSVLDDYTMVNFIPLDITDEEDIALVLQHADYIIQYGEDLEPKQPKDDVS 834
DLISLED MEEL GPNGGLVYCMEYL+ N+DWL+D L ++ DD+Y IFDCPGQ+ELYSH+PVM+++ L+ WS+++C V+L+D+ FI+DP+KF+SG L SLSAMVQLELPH+NVLTKCDL D E+E++LD + LL T A T K L+ A+ +V++DY+MV F+P++ITDEE I +VL H D+ I YGED+EPK+PKDD++
Sbjct: 55 DLISLEDVMEELGYGPNGGLVYCMEYLIQNLDWLQDLLLEYSDDDYFIFDCPGQIELYSHLPVMKHLCTALQEWSFSICGVYLIDSLFISDPSKFISGILCSLSAMVQLELPHVNVLTKCDLVDEQELEKYLDPSSGYLLETL-------------------------------------TNA---------------------------------TTNKWQPLSRAVCNVINDYSMVAFVPMNITDEESIEMVLHHIDHAINYGEDVEPKEPKDDMA 262
BLAST of mRNA_H-paniculata_contig20109.5179.1 vs. uniprot
Match: K0R8J1_THAOC (GPN-loop GTPase 3 n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R8J1_THAOC) HSP 1 Score: 239 bits (610), Expect = 1.380e-74 Identity = 130/271 (47.97%), Postives = 175/271 (64.58%), Query Frame = 1
Query: 1 DLISLEDAMEELELGPNGGLVYCMEYLLDNMDWLKDELDKFDDDEYIIFDCPGQVELYSHVPVMRNVLDQLKSWSY--NVCAVFLLDATFITDPAKFVSGALLSLSAMVQLELPHLNVLTKCDLADRAEVERFLDTDNAALLSMHYPQGQRDFHAGTAPFDNGREREGEEKGDGEGEQEGGETRAAXXXXXXXXXPRGLFGDGNEGVQREAGYGGRRGTLPKMARLTEAISSVLDDYTMVNFIPLDITDEEDIALVLQHADYIIQYGEDLE 807
DLIS++D MEEL+LGPNGGLVYCMEYLL+NMDWL++ LD FDDDEY+I DCPGQ+ELY+H+PVM ++DQLK W Y + +VF++DATF+T+PAKF+SG+LL+LSAM+ L+LPH+NVL+KCDL + A +ER L+ ++A L + GDGEG +A + + + + R+ R+ K RLT AI S+LDDY+MV FIPL+I DE+ I+ V+ D+ IQYGED E
Sbjct: 59 DLISVDDVMEELQLGPNGGLVYCMEYLLENMDWLQENLDNFDDDEYLILDCPGQIELYTHIPVMNKIIDQLKLWGYLDKMVSVFVVDATFVTEPAKFISGSLLALSAMISLQLPHVNVLSKCDLVEEASMERVLEMESALQLW-------------------------DVLGDGEG--------SALSMFHELRPKKSARSEEEDKLVRK-----RQERERKWNRLTVAICSLLDDYSMVGFIPLNINDEDSISHVMLTTDHAIQYGEDNE 291
BLAST of mRNA_H-paniculata_contig20109.5179.1 vs. uniprot
Match: A0A6U3ZEP1_9STRA (GPN-loop GTPase 3 n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3ZEP1_9STRA) HSP 1 Score: 236 bits (602), Expect = 2.430e-73 Identity = 131/278 (47.12%), Postives = 176/278 (63.31%), Query Frame = 1
Query: 1 DLISLEDAMEELELGPNGGLVYCMEYLLDNMDWLKDELDKFDDDEYIIFDCPGQVELYSHVPVMRNVLDQLKSWSY--NVCAVFLLDATFITDPAKFVSGALLSLSAMVQLELPHLNVLTKCDLADRAEVERFLDTDNAALLSMHYPQGQRDFHAGTAPFDNGREREGEEKGDGEGEQEGGETRAAXXXXXXXXXPRGLFGDGNEGVQREAGYGGRRGTLPKMARLTEAISSVLDDYTMVNFIPLDITDEEDIALVLQHADYIIQYGEDLEPKQPKDD 828
DLIS++D MEEL LGPNG L+YCMEYLL+N+DWL+DELD FDDDEY+I DCPGQ+ELY+H+PVMR V+DQ++ W Y ++ +VF++DATF+ D KF+SG+LLSLSAM+ +ELPH+NVL+KCDL + V+R LD +A L ++ + A G+ A G DG+E + E R K RLTEAI ++LDDYTMV+F+PL+ITDE+ I VL D+ +QYGED+E + + D
Sbjct: 61 DLISVDDVMEELGLGPNGSLIYCMEYLLENLDWLQDELDNFDDDEYLILDCPGQIELYTHIPVMRRVIDQMRMWGYESSMMSVFVVDATFVCDAPKFISGSLLSLSAMIAMELPHVNVLSKCDLVEEERVDRILDVGSATEL-----WNIEEYGSSVAIV--------------------GDEMA------------GKKDDGDEISKEERQLIELR--RKKRNRLTEAICTLLDDYTMVSFLPLNITDEDSIDHVLSVVDHTVQYGEDIECRGAEQD 299
BLAST of mRNA_H-paniculata_contig20109.5179.1 vs. uniprot
Match: K3W7I6_GLOUD (GPN-loop GTPase 3 n=2 Tax=Pythiaceae TaxID=4782 RepID=K3W7I6_GLOUD) HSP 1 Score: 234 bits (597), Expect = 2.810e-73 Identity = 123/275 (44.73%), Postives = 158/275 (57.45%), Query Frame = 1
Query: 1 DLISLEDAMEELELGPNGGLVYCMEYLLDNMDWLKDELDKFDDDEYIIFDCPGQVELYSHVPVMRNVLDQLKSWSYNVCAVFLLDATFITDPAKFVSGALLSLSAMVQLELPHLNVLTKCDLADRAEVERFLDTDNAALLSMHYPQGQRDFHAGTAPFDNGREREGEEKGDGEGEQEGGETRAAXXXXXXXXXPRGLFGDGNEGVQREAGYGGRRGTLPKMARLTEAISSVLDDYTMVNFIPLDITDEEDIALVLQHADYIIQYGEDLEPKQPKD 825
DLIS+ED MEEL GPNGGLVYCMEYL+ N+DWL+D L ++ DD+Y IFDCPGQ+ELYSH+PVM+ + D LK W + +C V+L+D+ FI DP KF+SG L SLSAMVQLELPH+NVLTKCDL D E+ ++LD + LL E A T PK L+ AI +V++D++MV F+P+++T EE I VL H D+ I YGEDLEP++PKD
Sbjct: 48 DLISVEDVMEELGYGPNGGLVYCMEYLVQNLDWLQDLLTEYSDDDYFIFDCPGQIELYSHLPVMKQLCDALKDWGFAICGVYLIDSLFIADPTKFISGVLCSLSAMVQLELPHINVLTKCDLVDEKELSKYLDPSSGYLL---------------------------------------ENLA-------------------------------NSTEPKWRPLSAAICNVINDFSMVAFVPMNVTREESIETVLLHVDHAINYGEDLEPQEPKD 252
BLAST of mRNA_H-paniculata_contig20109.5179.1 vs. uniprot
Match: A0A7S2RLE6_9STRA (GPN-loop GTPase 3 n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RLE6_9STRA) HSP 1 Score: 235 bits (600), Expect = 6.400e-73 Identity = 130/277 (46.93%), Postives = 172/277 (62.09%), Query Frame = 1
Query: 1 DLISLEDAMEELELGPNGGLVYCMEYLLDNMDWLKDELDKFDDDEYIIFDCPGQVELYSHVPVMRNVLDQLKSWSYN--VCAVFLLDATFITDPAKFVSGALLSLSAMVQLELPHLNVLTKCDLADRAEVERFLDTDNAALL------SMHYPQGQRDFHAGTAPFDNGREREGEEKGDGEGEQEGGETRAAXXXXXXXXXPRGLFGDGNEGVQREAGYGGRRGTLPKMARLTEAISSVLDDYTMVNFIPLDITDEEDIALVLQHADYIIQYGEDLE 807
DLIS++D MEEL LGPNGGL+YC+EYLL+NMDWL+DELD FDDDEY++ DCPGQ+ELY+H+PVM+ ++DQL+ W Y+ V +VF++DATF+ D KF+SG+LLSLSAM+ LELPH+NV++KCDL D +VER L T++A L ++ + Q DF T L GN + +A K +LT++I +VLDD++MV+FIPL+I DEE I VL H D IQYGED E
Sbjct: 63 DLISVDDVMEELGLGPNGGLLYCIEYLLENMDWLQDELDAFDDDEYLLLDCPGQIELYTHIPVMKRIVDQLRLWGYDGTVASVFVVDATFLCDAPKFISGSLLSLSAMLSLELPHVNVMSKCDLVDNEQVERVLGTESATQLYELEEYNLKH-QDLEDFKRVTI----------------------------------------LEKSGNASKEDKAWRRQVDARRQKQNKLTKSICNVLDDFSMVSFIPLNIKDEESIDNVLMHVDQTIQYGEDTE 298
BLAST of mRNA_H-paniculata_contig20109.5179.1 vs. uniprot
Match: A0A7S2PBB3_9STRA (GPN-loop GTPase 3 n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PBB3_9STRA) HSP 1 Score: 232 bits (592), Expect = 4.230e-72 Identity = 126/275 (45.82%), Postives = 176/275 (64.00%), Query Frame = 1
Query: 1 DLISLEDAMEELELGPNGGLVYCMEYLLDNMDWLKDELDKFDDDEYIIFDCPGQVELYSHVPVMRNVLDQLKSWSY--NVCAVFLLDATFITDPAKFVSGALLSLSAMVQLELPHLNVLTKCDLADRAEVERFLDTDNAA----LLSMHYPQGQRDFHAGTAPFDNGREREGEEKGDGEGEQEGGETRAAXXXXXXXXXPRGLFGDGNEGVQREAGYGGRRGTLPKMARLTEAISSVLDDYTMVNFIPLDITDEEDIALVLQHADYIIQYGEDLE 807
+LIS++D MEEL+LGPNG LVYCMEYLL+NMDWL+D LD +DDDEY+I DCPGQ+ELY+H+PVM ++DQ++ W Y ++ +VF++DATF+TDPAKF+SG+LL+LSAM+ ++LPH+NVL+KCDL + A ++R L+ ++A +L H + A P+++ T AA + + Q A R K +RLTE+I S+LDDY+MV F+PL+I DE+ I VL D+ QYGEDLE
Sbjct: 37 ELISVDDVMEELQLGPNGSLVYCMEYLLENMDWLQDHLDSYDDDEYLIIDCPGQIELYTHIPVMNKIIDQMRMWGYGESMVSVFVVDATFVTDPAKFISGSLLALSAMIAMQLPHVNVLSKCDLVEEASMDRVLEMESAIQLWDMLGDHSSES-----ASLQPYNH------------LVPATNNSTTAAAT-------------NNDNKAQISAQQRAR-----KWSRLTESICSLLDDYSMVGFVPLNINDEDSITHVLATVDHATQYGEDLE 276 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20109.5179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig20109.5179.1 >prot_H-paniculata_contig20109.5179.1 ID=prot_H-paniculata_contig20109.5179.1|Name=mRNA_H-paniculata_contig20109.5179.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=277bp MEELELGPNGGLVYCMEYLLDNMDWLKDELDKFDDDEYIIFDCPGQVELYback to top mRNA from alignment at H-paniculata_contig20109:139..3751- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig20109.5179.1 ID=mRNA_H-paniculata_contig20109.5179.1|Name=mRNA_H-paniculata_contig20109.5179.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3613bp|location=Sequence derived from alignment at H-paniculata_contig20109:139..3751- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig20109:139..3751- >mRNA_H-paniculata_contig20109.5179.1 ID=mRNA_H-paniculata_contig20109.5179.1|Name=mRNA_H-paniculata_contig20109.5179.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1662bp|location=Sequence derived from alignment at H-paniculata_contig20109:139..3751- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |