mRNA_H-paniculata_contig20096.5173.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20096.5173.1
Unique NamemRNA_H-paniculata_contig20096.5173.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig20096.5173.1 vs. uniprot
Match: R7QDG7_CHOCR (Uncharacterized protein n=3 Tax=Chondrus crispus TaxID=2769 RepID=R7QDG7_CHOCR)

HSP 1 Score: 125 bits (314), Expect = 5.740e-33
Identity = 65/131 (49.62%), Postives = 80/131 (61.07%), Query Frame = 1
Query:   13 YRSMVRSFMYASTGTRPDIAYAVHQGALHMEDPCREDLNTCKRIFRYLSSVPDLGITFGGKSNGHGLEGFVDADWAEDVEDRKSTTEYVLKLNGGAISWCSRKQQLVTWSSTEAEYVAAGEAGKETVYLRE 405
            YR  V S MY   GTRPD+AYA+ + + H  +PC       KR+ RY+    +LGI F  KS    L GF DADWA   + RKST+ YV K  GGAISW SRKQ +V  S+ EAEY+A  EA KE  +LR+
Sbjct:   31 YREAVGSLMYLMVGTRPDLAYAIGKLSQHSANPCESHWAGVKRVMRYVQGTRNLGIVFDNKSKSPELFGFSDADWAGCSDSRKSTSGYVFKFCGGAISWSSRKQTVVATSTCEAEYIALCEACKEATWLRQ 161          
BLAST of mRNA_H-paniculata_contig20096.5173.1 vs. uniprot
Match: A0A182G509_AEDAL (Uncharacterized protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182G509_AEDAL)

HSP 1 Score: 123 bits (309), Expect = 2.240e-32
Identity = 59/129 (45.74%), Postives = 82/129 (63.57%), Query Frame = 1
Query:   13 YRSMVRSFMYASTGTRPDIAYAVHQGALHMEDPCREDLNTCKRIFRYLSSVPDLGITFGGKSNGHGLEGFVDADWAEDVEDRKSTTEYVLKLNGGAISWCSRKQQLVTWSSTEAEYVAAGEAGKETVYL 399
            YR ++ S M+  +GTRPDI +A+   A   E+P +E     KR+ RYLS   D+G+ F  + +   L  +VDADWA D+ DRKSTT + +K+ G  + WCSRKQ +V  SS EAEYVA  +A KE ++L
Sbjct:   13 YRELIGSLMFLMSGTRPDICFALTYLARFQENPTQEHWQCLKRVLRYLSGTIDVGLQFSKRDDEPALSCYVDADWANDLVDRKSTTGFFIKVYGNVVQWCSRKQAIVALSSCEAEYVAVCDAAKEVLWL 141          
BLAST of mRNA_H-paniculata_contig20096.5173.1 vs. uniprot
Match: A0A060SU91_PYCCI (Uncharacterized protein n=2 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SU91_PYCCI)

HSP 1 Score: 124 bits (310), Expect = 4.140e-32
Identity = 68/134 (50.75%), Postives = 83/134 (61.94%), Query Frame = 1
Query:   13 YRSMVRSFMYASTGTRPDIAYAVHQGALHMEDPCREDLNTCKRIFRYLSSVPDLGITFGGKSNG---HGLE--GFVDADWAEDVEDRKSTTEYVLKLNGGAISWCSRKQQLVTWSSTEAEYVAAGEAGKETVYL 399
            Y+S + + MYA  G+RPDIA+AV   + H   P  E  N   R+FRYL     L +T+G        HGL   G+ DADWA D  DR+ST+ YV KL GGAISWCSRKQQ +  SSTEAEYVA   A KE ++L
Sbjct:   54 YQSALGALMYAMLGSRPDIAFAVGTLSKHASTPGTEHWNALMRVFRYLRGTSGLRLTYGKDLKPLCEHGLTVVGYSDADWAGDRNDRRSTSAYVFKLGGGAISWCSRKQQSIAQSSTEAEYVALALAAKEGLWL 187          
BLAST of mRNA_H-paniculata_contig20096.5173.1 vs. uniprot
Match: A0A7D9D5L2_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9D5L2_PARCT)

HSP 1 Score: 124 bits (310), Expect = 6.920e-32
Identity = 59/134 (44.03%), Postives = 85/134 (63.43%), Query Frame = 1
Query:    1 NSTEYRSMVRSFMYASTGTRPDIAYAVHQGALHMEDPCREDLNTCKRIFRYLSSVPDLGITFGGKSNGHGLEGFVDADWAEDVEDRKSTTEYVLKLNGGAISWCSRKQQLVTWSSTEAEYVAAGEAGKETVYLR 402
            N+ EY+ ++    Y +T TRPD+A AV   +  M  P +E  +  KR+ RY+    + G+ F GKS    L G+ DADWA D++ R+ST+ YV ++NG  +SWCS++Q  VT S+TEAEYVA   A +E V+LR
Sbjct:   82 NTNEYQKLIGCLTYVTTATRPDLASAVGILSKFMSKPSKEHWHGAKRVLRYIKDTVNYGLVFEGKSTKCSLIGYSDADWANDLDTRRSTSGYVFQINGSTVSWCSKRQPCVTRSTTEAEYVALSHATQEIVWLR 215          
BLAST of mRNA_H-paniculata_contig20096.5173.1 vs. uniprot
Match: UPI0009AB427F (uncharacterized protein LOC109950541 n=1 Tax=Prunus persica TaxID=3760 RepID=UPI0009AB427F)

HSP 1 Score: 123 bits (309), Expect = 1.510e-31
Identity = 65/134 (48.51%), Postives = 89/134 (66.42%), Query Frame = 1
Query:    1 NSTEYRSMVRSFMYASTGTRPDIAYAVHQGALHMEDPCREDLNTCKRIFRYLSSVPDLGITFGGKSNGHGLEGFVDADWAEDVEDRKSTTEYVLKLNGGAISWCSRKQQLVTWSSTEAEYVAAGEAGKETVYLR 402
            +ST Y+ ++ S MY  T TRPDI YAV   + +ME P    LN  KRI RY+    D G+ F  + +G G  G+ D+D+A D++DRKST+ ++  LN GAISW S+KQQ+VT SSTEAEYVAA  +  + ++LR
Sbjct:   96 DSTFYKQIIGSLMYL-TYTRPDIMYAVSLVSRYMEKPTEMHLNAAKRILRYVKGTIDYGV-FYKREDGSGFVGYTDSDYAGDIDDRKSTSGHIFLLNSGAISWSSKKQQIVTLSSTEAEYVAAAASSCQAMWLR 227          
BLAST of mRNA_H-paniculata_contig20096.5173.1 vs. uniprot
Match: A0A4Y9ZJA2_9AGAM (Integrase catalytic domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZJA2_9AGAM)

HSP 1 Score: 127 bits (320), Expect = 1.580e-31
Identity = 67/131 (51.15%), Postives = 80/131 (61.07%), Query Frame = 1
Query:   10 EYRSMVRSFMYASTGTRPDIAYAVHQGALHMEDPCREDLNTCKRIFRYLSSVPDLGITFGGKSNGHGLEGFVDADWAEDVEDRKSTTEYVLKLNGGAISWCSRKQQLVTWSSTEAEYVAAGEAGKETVYLR 402
            +Y+S V S MYA  GTRPDIAYAV   + H   P  E  N   R F+YL    D  + + GK     L G+VD+DWA D  DR+S + YV  L G AISW S+KQQ V  SSTEAEY+AA  A KE V+LR
Sbjct: 1186 KYQSAVGSLMYAMLGTRPDIAYAVGLLSQHSSAPGAEHWNVAARTFKYLRRTADYQLVYNGKRKNDELTGYVDSDWANDPNDRRSISGYVFTLAGAAISWSSKKQQSVAQSSTEAEYMAAAHATKEAVWLR 1316          
BLAST of mRNA_H-paniculata_contig20096.5173.1 vs. uniprot
Match: UPI001E2788DD (secreted RxLR effector protein 161-like n=1 Tax=Harmonia axyridis TaxID=115357 RepID=UPI001E2788DD)

HSP 1 Score: 118 bits (296), Expect = 2.000e-31
Identity = 60/130 (46.15%), Postives = 86/130 (66.15%), Query Frame = 1
Query:   13 YRSMVRSFMYASTGTRPDIAYAVHQGALHMEDPCREDLNTCKRIFRYLSSVPDLGITFGGKSNGHGLEGFVDADWAEDVEDRKSTTEYVLKLNGGAISWCSRKQQLVTWSSTEAEYVAAGEAGKETVYLR 402
            YR  V S M+A+  +RPDIAY+V   + ++  P +   N  KRI RYL S  +LGI +  + +   L GF D+D+A D + RKSTT Y+ KL+ G ++W S++QQ VT S+TEAEYVAA +A KE +++R
Sbjct:   27 YREAVGSLMFAAVVSRPDIAYSVGVASRYLNAPSKTHWNAVKRIIRYLKSTSELGIYY-SREDKLQLSGFSDSDYASDEDTRKSTTGYIFKLSNGDVTWSSKRQQAVTLSTTEAEYVAACQATKEAIWIR 155          
BLAST of mRNA_H-paniculata_contig20096.5173.1 vs. uniprot
Match: A0A5D6YB57_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YB57_9STRA)

HSP 1 Score: 124 bits (312), Expect = 3.030e-31
Identity = 65/130 (50.00%), Postives = 82/130 (63.08%), Query Frame = 1
Query:   13 YRSMVRSFMYASTGTRPDIAYAVHQGALHMEDPCREDLNTCKRIFRYLSSVPDLGITFGGKSNGHGLEGFVDADWAEDVEDRKSTTEYVLKLNGGAISWCSRKQQLVTWSSTEAEYVAAGEAGKETVYLR 402
            YRS V + MY   GTRPD+A AV   +    DPC       KR+ RYL + P  GI F G  +G  L G+ DADWA D+E R+ST+ YV  LNGG I+W S+KQ+ V  SSTEAEY+A  EA +E V+L+
Sbjct:  293 YRSAVGAVMYLMVGTRPDLAAAVGVLSQFAADPCPTHWQALKRVLRYLQATPTHGIRFAGSGDGE-LIGYSDADWAGDIETRRSTSGYVFVLNGGCITWRSKKQRTVALSSTEAEYMALSEATQEAVWLK 421          
BLAST of mRNA_H-paniculata_contig20096.5173.1 vs. uniprot
Match: A0A090C2V0_HYAAE (RxLR effector candidate protein (Fragment) n=3 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=A0A090C2V0_HYAAE)

HSP 1 Score: 121 bits (304), Expect = 3.450e-31
Identity = 62/130 (47.69%), Postives = 80/130 (61.54%), Query Frame = 1
Query:   13 YRSMVRSFMYASTGTRPDIAYAVHQGALHMEDPCREDLNTCKRIFRYLSSVPDLGITFGGKSNGHGLEGFVDADWAEDVEDRKSTTEYVLKLNGGAISWCSRKQQLVTWSSTEAEYVAAGEAGKETVYLR 402
            YRS V   MY    TRPD+A AV   +    DPC       KR+ RYL + P+ G+ F  +  G  + G+ DADWA D+E R+ST+ YV  +NGG ISW S+KQ+ V  SSTEAEY+A  EA KE V+L+
Sbjct:   37 YRSAVGGIMYLMVATRPDLAAAVGSLSQFSSDPCPTHWQALKRVLRYLQATPNHGLEF-TREEGSRICGYTDADWAGDIESRRSTSGYVFMMNGGCISWKSQKQRTVALSSTEAEYMALSEATKEAVWLK 165          
BLAST of mRNA_H-paniculata_contig20096.5173.1 vs. uniprot
Match: A0A177UJU6_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tilletia walkeri TaxID=117179 RepID=A0A177UJU6_9BASI)

HSP 1 Score: 126 bits (316), Expect = 4.910e-31
Identity = 61/129 (47.29%), Postives = 82/129 (63.57%), Query Frame = 1
Query:   13 YRSMVRSFMYASTGTRPDIAYAVHQGALHMEDPCREDLNTCKRIFRYLSSVPDLGITFGGKSNGHGLEGFVDADWAEDVEDRKSTTEYVLKLNGGAISWCSRKQQLVTWSSTEAEYVAAGEAGKETVYL 399
            YR++V    Y + GTRPD+A+AV        DP  E +   KR+ RY+       +TFGG  +  G+EG+VDADWA D +DR+ST+ +V  + GGA+SW SRKQ  V  S+ EAEYVAAG AG+E + L
Sbjct:  484 YRAIVGCLAYLAQGTRPDLAFAVSTLGKFSSDPTEEHMEAAKRVLRYIRGTAGAKLTFGGDRSEEGVEGYVDADWAADRDDRRSTSGFVYTMAGGAVSWGSRKQGAVALSTAEAEYVAAGVAGREALLL 612          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20096.5173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7QDG7_CHOCR5.740e-3349.62Uncharacterized protein n=3 Tax=Chondrus crispus T... [more]
A0A182G509_AEDAL2.240e-3245.74Uncharacterized protein n=2 Tax=Aedes albopictus T... [more]
A0A060SU91_PYCCI4.140e-3250.75Uncharacterized protein n=2 Tax=Pycnoporus cinnaba... [more]
A0A7D9D5L2_PARCT6.920e-3244.03Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
UPI0009AB427F1.510e-3148.51uncharacterized protein LOC109950541 n=1 Tax=Prunu... [more]
A0A4Y9ZJA2_9AGAM1.580e-3151.15Integrase catalytic domain-containing protein n=1 ... [more]
UPI001E2788DD2.000e-3146.15secreted RxLR effector protein 161-like n=1 Tax=Ha... [more]
A0A5D6YB57_9STRA3.030e-3150.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A090C2V0_HYAAE3.450e-3147.69RxLR effector candidate protein (Fragment) n=3 Tax... [more]
A0A177UJU6_9BASI4.910e-3147.29Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20096contigH-paniculata_contig20096:55..462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.9
Seed ortholog evalue3.6e-24
Seed eggNOG ortholog67593.Physo141588
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHJF@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size408
Cds size387
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929515.8585272-CDS-H-paniculata_contig20096:54..4411622929515.8585272-CDS-H-paniculata_contig20096:54..441Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20096 55..441 -
1691480894.7234955-CDS-H-paniculata_contig20096:54..4411691480894.7234955-CDS-H-paniculata_contig20096:54..441Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20096 55..441 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929515.8737817-UTR-H-paniculata_contig20096:441..4621622929515.8737817-UTR-H-paniculata_contig20096:441..462Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20096 442..462 -
1691480894.7362885-UTR-H-paniculata_contig20096:441..4621691480894.7362885-UTR-H-paniculata_contig20096:441..462Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20096 442..462 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20096.5173.1prot_H-paniculata_contig20096.5173.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20096 55..441 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20096.5173.1

>prot_H-paniculata_contig20096.5173.1 ID=prot_H-paniculata_contig20096.5173.1|Name=mRNA_H-paniculata_contig20096.5173.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=129bp
MVRSFMYASTGTRPDIAYAVHQGALHMEDPCREDLNTCKRIFRYLSSVPD
LGITFGGKSNGHGLEGFVDADWAEDVEDRKSTTEYVLKLNGGAISWCSRK
QQLVTWSSTEAEYVAAGEAGKETVYLRE*
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mRNA from alignment at H-paniculata_contig20096:55..462-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20096.5173.1 ID=mRNA_H-paniculata_contig20096.5173.1|Name=mRNA_H-paniculata_contig20096.5173.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=408bp|location=Sequence derived from alignment at H-paniculata_contig20096:55..462- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATTCAACTGAATACAGAAGCATGGTAAGATCATTCATGTACGCCTCGAC AGGAACTAGACCTGATATAGCATACGCGGTACACCAAGGAGCACTTCATA TGGAGGACCCATGTCGGGAAGACTTGAATACTTGCAAGCGCATTTTTCGT TATCTCAGTTCTGTGCCTGACCTCGGCATTACGTTCGGCGGTAAGAGTAA TGGTCACGGTCTGGAAGGATTCGTTGATGCCGATTGGGCGGAAGATGTCG AGGACCGAAAGTCCACAACAGAATACGTATTAAAACTAAACGGTGGTGCG ATAAGTTGGTGCTCTAGGAAGCAACAGTTAGTCACGTGGTCCAGTACAGA GGCAGAGTACGTTGCTGCAGGAGAAGCGGGAAAGGAGACGGTATATCTTA GGGAGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig20096:55..462-

>mRNA_H-paniculata_contig20096.5173.1 ID=mRNA_H-paniculata_contig20096.5173.1|Name=mRNA_H-paniculata_contig20096.5173.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=774bp|location=Sequence derived from alignment at H-paniculata_contig20096:55..462- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTAAGATCATTCATGTACGCCTCGACAGGAACTAGACCTGATATAGC
ATACGCGGTACACCAAGGAGCACTTCATATGGAGGACCCATGTCGGGAAG
ACTTGAATACTTGCAAGCGCATTTTTCGTTATCTCAGTTCTGTGCCTGAC
CTCGGCATTACGTTCGGCGGTAAGAGTAATGGTCACGGTCTGGAAGGATT
CGTTGATGCCGATTGGGCGGAAGATGTCGAGGACCGAAAGTCCACAACAG
AATACGTATTAAAACTAAACGGTGGTGCGATAAGTTGGTGCTCTAGGAAG
CAACAGTTAGTCACGTGGTCCAGTACAGAGGCAGAGTACGTTGCTGCAGG
AGAAGCGGGAAAGGAGACGGTATATCTTAGGGAGTAAATGGTAAGATCAT
TCATGTACGCCTCGACAGGAACTAGACCTGATATAGCATACGCGGTACAC
CAAGGAGCACTTCATATGGAGGACCCATGTCGGGAAGACTTGAATACTTG
CAAGCGCATTTTTCGTTATCTCAGTTCTGTGCCTGACCTCGGCATTACGT
TCGGCGGTAAGAGTAATGGTCACGGTCTGGAAGGATTCGTTGATGCCGAT
TGGGCGGAAGATGTCGAGGACCGAAAGTCCACAACAGAATACGTATTAAA
ACTAAACGGTGGTGCGATAAGTTGGTGCTCTAGGAAGCAACAGTTAGTCA
CGTGGTCCAGTACAGAGGCAGAGTACGTTGCTGCAGGAGAAGCGGGAAAG
GAGACGGTATATCTTAGGGAGTAA
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