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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-00_008690.1 |
| Exons | 3 |
| Model size | 1709 |
| Cds size | 795 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig20090.5172.1 >prot_H-paniculata_contig20090.5172.1 ID=prot_H-paniculata_contig20090.5172.1|Name=mRNA_H-paniculata_contig20090.5172.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=265bp
MVSPLDAVDPLEEGPSAQDLEMVEYEEEEAAGLELEDGEEEDGSGDYEDY
VEMQVEDGGADVSESKRGQPRRRTPAPVSVRRDVTGGMVVIDTLRMMKEK
GGAPTTLRKKRTDPLFPKKHPFPFDWGARCELEPGCRAHLNVAHRGVEED
VALAAKLLGKVKERFPSIVNTMEINLEHDRTSREKLLESNAFEVWLEGTQ
CVWYHMRAETNVEMTDEHIEDILEDIAFRVSDEAILWPSVHYVPPFPVPG
YSREDHIEKLTQYV* back to topmRNA from alignment at H-paniculata_contig20090:569..3772- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig20090.5172.1 ID=mRNA_H-paniculata_contig20090.5172.1|Name=mRNA_H-paniculata_contig20090.5172.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3204bp|location=Sequence derived from alignment at H-paniculata_contig20090:569..3772- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAGCCTTCCGAAGGCCAACGTCGTCATTCGGGAGCTCCTTGAAGGCCAC
CTCGCTCCCATTAGCTCGTCGCGCTCGGTGGAGCTCACCCATACACGCAA
TATCCACAAGGAGCCGGTCGACGAGGGCAAGACGCTCGCCTCCGTTGGGC
GCGACGGGAATCAACGGGGAGGACATCGACCCGCTGGAAGCGGGCCCGAG
CATGGTGTCTCCGTTGGACGCAGTCGATCCGCTGGAAGAGGGACCGAGCG
CCCAAGACCTGGAAATGGTGGAGTACGAGGAAGAGGAAGCGGCTGGGTTA
GAACTAGAAGATGGAGAAGAAGAAGATGGTAGTGGAGATTACGAAGATTA
CGTTGAAATGCAAGTTGAAGATGGAGGGGCGGATGTCTCGGAGAGTAAAC
GAGGTCAGCCACGGCGCAGGACCCCCGCCCCAGTGTCTGTGCGCAGGGAC
GTCACAGGAGGCATGGTTGTGATCGATACGCTGAGGATGATGAAGGAGAA
GGGAGGGGCGCCGACAACGCTGAGGAAAAAGAGGACCGATCCGTTGTTCC
CCAAGAAGCACCCGTTTCCGTTCGACTGGGGCGCTCGCTGTGAGCTGGAG
CCCGGGTGTCGAGCACACTTGGTGAGTAATTGGAGCATTCGTTTTATTTT
TTGCGTGGGGGTGGTTGGGCGACTGCGGGTTGTATTGTTGGCTTTTTACT
ACGAAAACGCGGTAGTGTCGACGGAGATTCGGGGCTTGGAGGCAGCGCAG
TTCTGACGTCCCATTTGAGGCCGTTTTGGGGTCACAGCAACGTGTAAGTG
TTTTCTAGAGCTGGTTCGCGAAAAGCGGTGGCTACGAATTTATAAAGCGT
GGATAAAATTCGACGTGTTTTCGCGCGCTTTCGTTTTGTGCTGATATCTT
TCGGCTTCGATATACAGGCGTGCACGCGTTGATGCTGCACATCCGTGTCC
CAAATAGTTTCGACGTATCTCTTACCCTCAACTGGTGTAGAACTATTAAA
AAGGGCTGTATGGGGAGGGAGTCCCATGTGCTGTTTCACCCCATTTTTTT
CGGGGCCATTCACTGCGATTAGAGGGATGAGTCGTTCAGCGCATTCGATG
GTTTGCTGGAGGTGACACACATCACGCAATGGCCGACCCACTGTCCGTTT
GATGCTGCGCGTATGCCAACCTCGCGTTCGAACCGCAGAACGTCGCGCAC
AGAGGTGTGGAAGAAGACGTTGCTCTAGCTGCGAAGCTCTTGGGCAAGGT
CAAGGAACGCTTCCCAAGTATTGTTAATGTGAGCGTTGGTTGGGAGGGGG
GGGGGCTCAATGTCTTGTCTATACAATGGGAAACGAGGTACACATTGCGA
ACAGATTCCCTGTTTATAGCGATAGAAGGACAGAAAAGATGGCGTTTGAA
AAACGTCCAGTGGCATTGACGAAATAGAGAAGCGAGCTACACGTAATCGG
TTGCATCTACGTTTCTCGTGAGAAGACTATATAATCGGAATCGGTGGTTC
GTTCTTATTGCTTTGCATGGGTTGGGCGAGATTTTGGTTTGCATGCCGTG
CGAGGGCAGTGCTTCACCGCCAGTTCTGTACCCTGCGGTGTGTGTGCTGC
TGTGGCACCACCGCTGTGAGTTGTGGTCGCTCTCATTGGGGGATGACATG
TCGTCGCGTTGCCCTTGTACCATAGTTGGCGCAGTGCCTAGACATTTCTG
TGTTGGACCAGTCTGATGCGAAGAATGGATATACTTTTTTTGTTTCGAAC
TTCAAAATTTAAAAACCTGTTTTCCTTTTGCCATCTTCGGGAATGCCCCT
CTGCGTCAAATCACCCACCGCAGCGACATCAGGGTATATACGTGGACACG
ACTCCTTGAATCGCTTAGTCGGAAACAAACATTTTTTTCTCTGATGAATT
GGCCCTGATCCCTTGAACATTTGCCGTTGATCAGACCGCAAATCGGAAGA
GAATACGGTGCCCAGTAGTATTCGAGCGGAATTTTGCCGAGAGATCTTCT
GATGGCAGAAGTTTTGACCTTGCGTCGTCGTGGGAATTGACGCCGCGATA
GATATGCAACTACCCCCATTTGTAGTGCGAGCATAAAGGAATACCCTCCG
TATCAATGTCCCCTGAACTGCCCGAAATACTACCAATAGCTATGAGTTCC
GTGATGGCATGCCTTCGGTGCCTCCCCCTCGCTTTTATTCATCTTGTCGA
CCTCAGACGATGGAAATCAATCTGGAGCATGACCGCACGTCCAGAGAGAA
GCTGTTGGAGTCGAACGCCTTTGAGGTCTGGCTGGAGGGCACGCAATGCG
TTTGGTATCACATGAGGGCGGAAACCAACGTCGAGATGACGGACGAACAC
ATCGAGGATATTCTGGAGGACATCGCATTTCGCGTATCGGACGAGGCCAT
CCTTTGGCCGAGCGTGCATTATGTCCCCCCGTTTCCCGTGCCTGGCTACT
CTCGCGAGGATCACATAGAGAAACTCACTCAGTACGTGTAGAACTGCGCT
GGGCGGATGAGAATTTTGACACATAGGAAAGGGGCGCGGGCATTATTTAT
CTGATATTCCGAAGTTCGAAATGAAGTGGTATTAATTTGTGTGCAATCAT
GATGTCTTCGGTTTTTTTTTCAGTTTATGTCGTGTGTTGTATGATTTGCC
CTGCAATTATTTTTGTGCTACAAGTAGAGTTTTTTCTTGCCATGCTGGGT
GGCAGAGGTTTTGGTGACGGGCGATGGTGGAGCAGCGATTCTTGTTCTAG
TGACCGCAAGGGCGGCTTTTGTATCCGAGCCACAGGTCATACCACCAGCG
TGGCAGACGGGTGTTTGTCTGCCAAAGGCCTCCATGATGATCCGGACAAG
GTTACGTCTTGAAAGTCAGATAACAATGGCGCATGGAGGGGAAGCAGTTC
AGTAAATCTCTGTATGCGAAAGCAAGCCACCATAGAGTCTAGCTGCATGT
GGGTAACTTCTATCTGTCTGCTTTCTGTTTCGCTCGAAGACCACTGTGTG
ATGACAAAATTAACCGACAGCCCTCTTGTCGCACGATTGTCCATGCGCTT
CTCCTAGTGCGAGCGGGGATCATTATTTTTTTTGCTCACCAAATTGTTGC
GAGTGAAAACCTCCTTCAGCTGAAAATAGAGCACACTTCTTCACAACTAC
ACTTACAGATGGTCGCGCGCACCAGTCTTGTATCGTAATCTCGTGGGTTC
CCAC back to topCoding sequence (CDS) from alignment at H-paniculata_contig20090:569..3772- >mRNA_H-paniculata_contig20090.5172.1 ID=mRNA_H-paniculata_contig20090.5172.1|Name=mRNA_H-paniculata_contig20090.5172.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1590bp|location=Sequence derived from alignment at H-paniculata_contig20090:569..3772- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGTCTCCGTTGGACGCAGTCGATCCGCTGGAAGAGGGACCGAGCGC
CCAAGACCTGGAAATGGTGGAGTACGAGGAAGAGGAAGCGGCTGGGTTAG
AACTAGAAGATGGAGAAGAAGAAGATGGTAGTGGAGATTACGAAGATTAC
GTTGAAATGCAAGTTGAAGATGGAGGGGCGGATGTCTCGGAGAGTAAACG
AGGTCAGCCACGGCGCAGGACCCCCGCCCCAGTGTCTGTGCGCAGGGACG
TCACAGGAGGCATGGTTGTGATCGATACGCTGAGGATGATGAAGGAGAAG
GGAGGGGCGCCGACAACGCTGAGGAAAAAGAGGACCGATCCGTTGTTCCC
CAAGAAGCACCCGTTTCCGTTCGACTGGGGCGCTCGCTGTGAGCTGGAGC
CCGGGTGTCGAGCACACTTGATGGTGTCTCCGTTGGACGCAGTCGATCCG
CTGGAAGAGGGACCGAGCGCCCAAGACCTGGAAATGGTGGAGTACGAGGA
AGAGGAAGCGGCTGGGTTAGAACTAGAAGATGGAGAAGAAGAAGATGGTA
GTGGAGATTACGAAGATTACGTTGAAATGCAAGTTGAAGATGGAGGGGCG
GATGTCTCGGAGAGTAAACGAGGTCAGCCACGGCGCAGGACCCCCGCCCC
AGTGTCTGTGCGCAGGGACGTCACAGGAGGCATGGTTGTGATCGATACGC
TGAGGATGATGAAGGAGAAGGGAGGGGCGCCGACAACGCTGAGGAAAAAG
AGGACCGATCCGTTGTTCCCCAAGAAGCACCCGTTTCCGTTCGACTGGGG
CGCTCGCTGTGAGCTGGAGCCCGGGTGTCGAGCACACTTGAACGTCGCGC
ACAGAGGTGTGGAAGAAGACGTTGCTCTAGCTGCGAAGCTCTTGGGCAAG
GTCAAGGAACGCTTCCCAAGTATTGTTAATAACGTCGCGCACAGAGGTGT
GGAAGAAGACGTTGCTCTAGCTGCGAAGCTCTTGGGCAAGGTCAAGGAAC
GCTTCCCAAGTATTGTTAATACGATGGAAATCAATCTGGAGCATGACCGC
ACGTCCAGAGAGAAGCTGTTGGAGTCGAACGCCTTTGAGGTCTGGCTGGA
GGGCACGCAATGCGTTTGGTATCACATGAGGGCGGAAACCAACGTCGAGA
TGACGGACGAACACATCGAGGATATTCTGGAGGACATCGCATTTCGCGTA
TCGGACGAGGCCATCCTTTGGCCGAGCGTGCATTATGTCCCCCCGTTTCC
CGTGCCTGGCTACTCTCGCGAGGATCACATAGAGAAACTCACTCAGTACG
TGTAGACGATGGAAATCAATCTGGAGCATGACCGCACGTCCAGAGAGAAG
CTGTTGGAGTCGAACGCCTTTGAGGTCTGGCTGGAGGGCACGCAATGCGT
TTGGTATCACATGAGGGCGGAAACCAACGTCGAGATGACGGACGAACACA
TCGAGGATATTCTGGAGGACATCGCATTTCGCGTATCGGACGAGGCCATC
CTTTGGCCGAGCGTGCATTATGTCCCCCCGTTTCCCGTGCCTGGCTACTC
TCGCGAGGATCACATAGAGAAACTCACTCAGTACGTGTAG back to top
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