mRNA_H-paniculata_contig2008.5168.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2008.5168.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE) HSP 1 Score: 83.2 bits (204), Expect = 8.320e-17 Identity = 46/90 (51.11%), Postives = 59/90 (65.56%), Query Frame = 2
Query: 2 YGSMAYKLRDKDGVE-QVKSVHLVVDGGYHRRRSLVCSVKEAATREELAWSKRLESFRKDVECFFGILKGRFRSLKLRILFRKSAQVENV 268
Y YKL +DG + + K +L+VD GYH+ R+L+ K R +L +SKRLES RKDVEC+FGILKGRFR KL I F K ++NV
Sbjct: 229 YTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNV 318
BLAST of mRNA_H-paniculata_contig2008.5168.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE) HSP 1 Score: 83.2 bits (204), Expect = 1.050e-16 Identity = 46/90 (51.11%), Postives = 59/90 (65.56%), Query Frame = 2
Query: 2 YGSMAYKLRDKDGVE-QVKSVHLVVDGGYHRRRSLVCSVKEAATREELAWSKRLESFRKDVECFFGILKGRFRSLKLRILFRKSAQVENV 268
Y YKL +DG + + K +L+VD GYH+ R+L+ K R +L +SKRLES RKDVEC+FGILKGRFR KL I F K ++NV
Sbjct: 320 YTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNV 409
BLAST of mRNA_H-paniculata_contig2008.5168.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE) HSP 1 Score: 82.8 bits (203), Expect = 1.400e-16 Identity = 43/90 (47.78%), Postives = 59/90 (65.56%), Query Frame = 2
Query: 2 YGSMAYKLRDKDGVE-QVKSVHLVVDGGYHRRRSLVCSVKEAATREELAWSKRLESFRKDVECFFGILKGRFRSLKLRILFRKSAQVENV 268
Y + + + DG Q+K +L+VD GYH+ +L+ K + +LA+SKRLES RKDVECFFGI+KGRFR LKL I + K ++NV
Sbjct: 304 YSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNV 393
BLAST of mRNA_H-paniculata_contig2008.5168.1 vs. uniprot
Match: A0A6H5JTC6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC6_9PHAE) HSP 1 Score: 80.1 bits (196), Expect = 2.320e-16 Identity = 42/90 (46.67%), Postives = 58/90 (64.44%), Query Frame = 2
Query: 2 YGSMAYKLRDKDGVE-QVKSVHLVVDGGYHRRRSLVCSVKEAATREELAWSKRLESFRKDVECFFGILKGRFRSLKLRILFRKSAQVENV 268
Y + + + DG Q+K +L+VD GYH+ +L+ K + +LA+SKRLES RKDVECFFGI+KG FR LKL I + K ++NV
Sbjct: 63 YSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGLFRILKLSIPYHKQEDIDNV 152
BLAST of mRNA_H-paniculata_contig2008.5168.1 vs. uniprot
Match: A0A6H5K604_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K604_9PHAE) HSP 1 Score: 80.1 bits (196), Expect = 2.750e-16 Identity = 42/89 (47.19%), Postives = 57/89 (64.04%), Query Frame = 2
Query: 2 YGSMAYKLRDKDGVE-QVKSVHLVVDGGYHRRRSLVCSVKEAATREELAWSKRLESFRKDVECFFGILKGRFRSLKLRILFRKSAQVEN 265
+ S+ YKL + DG E + K LVVDGGY + L+ +K AT EE WS+RLES RKD+EC +G +KGRFR K IL++ ++N
Sbjct: 124 WSSLKYKLYNADGSETEYKGAWLVVDGGYQKIPLLIPPIKHHATVEEHDWSRRLESMRKDIECCYGRVKGRFRLFKAGILYKTRDSIDN 212
BLAST of mRNA_H-paniculata_contig2008.5168.1 vs. uniprot
Match: A0A6H5JP18_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP18_9PHAE) HSP 1 Score: 78.2 bits (191), Expect = 4.390e-16 Identity = 36/90 (40.00%), Postives = 60/90 (66.67%), Query Frame = 2
Query: 2 YGSMAYKLRDKDGVE-QVKSVHLVVDGGYHRRRSLVCSVKEAATREELAWSKRLESFRKDVECFFGILKGRFRSLKLRILFRKSAQVENV 268
Y + Y L+ +DG + + K L+VDGGYH + L ++ +++ E +S++LES RKD EC FG++KGRFR K++ L+RK +++N+
Sbjct: 8 YKDVKYTLKGEDGADIKEKRPWLIVDGGYHNWKQLQSPIRAPSSKAESGFSRQLESVRKDSECCFGVVKGRFRICKMQFLYRKKERIDNI 97
BLAST of mRNA_H-paniculata_contig2008.5168.1 vs. uniprot
Match: A0A6H5JV45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV45_9PHAE) HSP 1 Score: 80.1 bits (196), Expect = 1.140e-15 Identity = 38/67 (56.72%), Postives = 46/67 (68.66%), Query Frame = 2
Query: 65 LVVDGGYHRRRSLVCSVKEAATREELAWSKRLESFRKDVECFFGILKGRFRSLKLRILFRKSAQVEN 265
L+VDGGYHR SL+C KE A+ + WSKR ES RKD+EC FG LKGRFR K ILF +++N
Sbjct: 280 LIVDGGYHRVPSLICPFKEYASEAQQEWSKRFESIRKDIECLFGRLKGRFRLFKTGILFGTREKIDN 346
BLAST of mRNA_H-paniculata_contig2008.5168.1 vs. uniprot
Match: A0A6H5JQM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM6_9PHAE) HSP 1 Score: 78.2 bits (191), Expect = 1.590e-15 Identity = 40/90 (44.44%), Postives = 57/90 (63.33%), Query Frame = 2
Query: 2 YGSMAYKLRDKDGVEQVK-SVHLVVDGGYHRRRSLVCSVKEAATREELAWSKRLESFRKDVECFFGILKGRFRSLKLRILFRKSAQVENV 268
Y YKLR +G E+ + L++D YH +L+ K + ++ A+S+ LES RKDVECFFGILKGRFR LKLR+ + K ++N+
Sbjct: 63 YTEREYKLRKVNGTERTRRGCFLIMDNWYHEWVTLIAPSKYPQSNKDTAFSRHLESVRKDVECFFGILKGRFRILKLRMPYHKREYIDNI 152
BLAST of mRNA_H-paniculata_contig2008.5168.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE) HSP 1 Score: 79.7 bits (195), Expect = 1.670e-15 Identity = 42/90 (46.67%), Postives = 58/90 (64.44%), Query Frame = 2
Query: 2 YGSMAYKLRDKDGV-EQVKSVHLVVDGGYHRRRSLVCSVKEAATREELAWSKRLESFRKDVECFFGILKGRFRSLKLRILFRKSAQVENV 268
Y + + KDG E +K +L+VD GYH+ R L+ K + +L +SKRLES RKDVECFFGILK RFR LKL + ++K +++ V
Sbjct: 275 YAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLDYV 364
BLAST of mRNA_H-paniculata_contig2008.5168.1 vs. uniprot
Match: A0A6H5JHC3_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHC3_9PHAE) HSP 1 Score: 79.0 bits (193), Expect = 3.070e-15 Identity = 40/77 (51.95%), Postives = 57/77 (74.03%), Query Frame = 2
Query: 17 YKLRDKDGVE-QVKSVHLVVDGGYHRRRSLVCSVKEAATREELAWSKRLESFRKDVECFFGILKGRFRSLKLRILFR 244
+ L +DG E + + ++L+VDGGYH+ C V+ T++ELA+ K+LES RKD+ECFFGILKGRFR LK+ +L+R
Sbjct: 281 FTLLGEDGSEFEERGLYLIVDGGYHK-----CPVQFPVTQDELAFRKQLESVRKDIECFFGILKGRFRILKMPLLYR 352 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2008.5168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2008.5168.1 >prot_H-paniculata_contig2008.5168.1 ID=prot_H-paniculata_contig2008.5168.1|Name=mRNA_H-paniculata_contig2008.5168.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=86bp MAYKLRDKDGVEQVKSVHLVVDGGYHRRRSLVCSVKEAATREELAWSKRLback to top mRNA from alignment at H-paniculata_contig2008:11691..12566- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2008.5168.1 ID=mRNA_H-paniculata_contig2008.5168.1|Name=mRNA_H-paniculata_contig2008.5168.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=876bp|location=Sequence derived from alignment at H-paniculata_contig2008:11691..12566- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2008:11691..12566- >mRNA_H-paniculata_contig2008.5168.1 ID=mRNA_H-paniculata_contig2008.5168.1|Name=mRNA_H-paniculata_contig2008.5168.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at H-paniculata_contig2008:11691..12566- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |