mRNA_H-paniculata_contig2008.5168.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2008.5168.1
Unique NamemRNA_H-paniculata_contig2008.5168.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2008.5168.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 8.320e-17
Identity = 46/90 (51.11%), Postives = 59/90 (65.56%), Query Frame = 2
Query:    2 YGSMAYKLRDKDGVE-QVKSVHLVVDGGYHRRRSLVCSVKEAATREELAWSKRLESFRKDVECFFGILKGRFRSLKLRILFRKSAQVENV 268
            Y    YKL  +DG + + K  +L+VD GYH+ R+L+   K    R +L +SKRLES RKDVEC+FGILKGRFR  KL I F K   ++NV
Sbjct:  229 YTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNV 318          
BLAST of mRNA_H-paniculata_contig2008.5168.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.050e-16
Identity = 46/90 (51.11%), Postives = 59/90 (65.56%), Query Frame = 2
Query:    2 YGSMAYKLRDKDGVE-QVKSVHLVVDGGYHRRRSLVCSVKEAATREELAWSKRLESFRKDVECFFGILKGRFRSLKLRILFRKSAQVENV 268
            Y    YKL  +DG + + K  +L+VD GYH+ R+L+   K    R +L +SKRLES RKDVEC+FGILKGRFR  KL I F K   ++NV
Sbjct:  320 YTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNV 409          
BLAST of mRNA_H-paniculata_contig2008.5168.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.400e-16
Identity = 43/90 (47.78%), Postives = 59/90 (65.56%), Query Frame = 2
Query:    2 YGSMAYKLRDKDGVE-QVKSVHLVVDGGYHRRRSLVCSVKEAATREELAWSKRLESFRKDVECFFGILKGRFRSLKLRILFRKSAQVENV 268
            Y    + + + DG   Q+K  +L+VD GYH+  +L+   K    + +LA+SKRLES RKDVECFFGI+KGRFR LKL I + K   ++NV
Sbjct:  304 YSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNV 393          
BLAST of mRNA_H-paniculata_contig2008.5168.1 vs. uniprot
Match: A0A6H5JTC6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC6_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 2.320e-16
Identity = 42/90 (46.67%), Postives = 58/90 (64.44%), Query Frame = 2
Query:    2 YGSMAYKLRDKDGVE-QVKSVHLVVDGGYHRRRSLVCSVKEAATREELAWSKRLESFRKDVECFFGILKGRFRSLKLRILFRKSAQVENV 268
            Y    + + + DG   Q+K  +L+VD GYH+  +L+   K    + +LA+SKRLES RKDVECFFGI+KG FR LKL I + K   ++NV
Sbjct:   63 YSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGLFRILKLSIPYHKQEDIDNV 152          
BLAST of mRNA_H-paniculata_contig2008.5168.1 vs. uniprot
Match: A0A6H5K604_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K604_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 2.750e-16
Identity = 42/89 (47.19%), Postives = 57/89 (64.04%), Query Frame = 2
Query:    2 YGSMAYKLRDKDGVE-QVKSVHLVVDGGYHRRRSLVCSVKEAATREELAWSKRLESFRKDVECFFGILKGRFRSLKLRILFRKSAQVEN 265
            + S+ YKL + DG E + K   LVVDGGY +   L+  +K  AT EE  WS+RLES RKD+EC +G +KGRFR  K  IL++    ++N
Sbjct:  124 WSSLKYKLYNADGSETEYKGAWLVVDGGYQKIPLLIPPIKHHATVEEHDWSRRLESMRKDIECCYGRVKGRFRLFKAGILYKTRDSIDN 212          
BLAST of mRNA_H-paniculata_contig2008.5168.1 vs. uniprot
Match: A0A6H5JP18_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP18_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 4.390e-16
Identity = 36/90 (40.00%), Postives = 60/90 (66.67%), Query Frame = 2
Query:    2 YGSMAYKLRDKDGVE-QVKSVHLVVDGGYHRRRSLVCSVKEAATREELAWSKRLESFRKDVECFFGILKGRFRSLKLRILFRKSAQVENV 268
            Y  + Y L+ +DG + + K   L+VDGGYH  + L   ++  +++ E  +S++LES RKD EC FG++KGRFR  K++ L+RK  +++N+
Sbjct:    8 YKDVKYTLKGEDGADIKEKRPWLIVDGGYHNWKQLQSPIRAPSSKAESGFSRQLESVRKDSECCFGVVKGRFRICKMQFLYRKKERIDNI 97          
BLAST of mRNA_H-paniculata_contig2008.5168.1 vs. uniprot
Match: A0A6H5JV45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV45_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.140e-15
Identity = 38/67 (56.72%), Postives = 46/67 (68.66%), Query Frame = 2
Query:   65 LVVDGGYHRRRSLVCSVKEAATREELAWSKRLESFRKDVECFFGILKGRFRSLKLRILFRKSAQVEN 265
            L+VDGGYHR  SL+C  KE A+  +  WSKR ES RKD+EC FG LKGRFR  K  ILF    +++N
Sbjct:  280 LIVDGGYHRVPSLICPFKEYASEAQQEWSKRFESIRKDIECLFGRLKGRFRLFKTGILFGTREKIDN 346          
BLAST of mRNA_H-paniculata_contig2008.5168.1 vs. uniprot
Match: A0A6H5JQM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM6_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.590e-15
Identity = 40/90 (44.44%), Postives = 57/90 (63.33%), Query Frame = 2
Query:    2 YGSMAYKLRDKDGVEQVK-SVHLVVDGGYHRRRSLVCSVKEAATREELAWSKRLESFRKDVECFFGILKGRFRSLKLRILFRKSAQVENV 268
            Y    YKLR  +G E+ +    L++D  YH   +L+   K   + ++ A+S+ LES RKDVECFFGILKGRFR LKLR+ + K   ++N+
Sbjct:   63 YTEREYKLRKVNGTERTRRGCFLIMDNWYHEWVTLIAPSKYPQSNKDTAFSRHLESVRKDVECFFGILKGRFRILKLRMPYHKREYIDNI 152          
BLAST of mRNA_H-paniculata_contig2008.5168.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.670e-15
Identity = 42/90 (46.67%), Postives = 58/90 (64.44%), Query Frame = 2
Query:    2 YGSMAYKLRDKDGV-EQVKSVHLVVDGGYHRRRSLVCSVKEAATREELAWSKRLESFRKDVECFFGILKGRFRSLKLRILFRKSAQVENV 268
            Y    + +  KDG  E +K  +L+VD GYH+ R L+   K   +  +L +SKRLES RKDVECFFGILK RFR LKL + ++K  +++ V
Sbjct:  275 YAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLDYV 364          
BLAST of mRNA_H-paniculata_contig2008.5168.1 vs. uniprot
Match: A0A6H5JHC3_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHC3_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 3.070e-15
Identity = 40/77 (51.95%), Postives = 57/77 (74.03%), Query Frame = 2
Query:   17 YKLRDKDGVE-QVKSVHLVVDGGYHRRRSLVCSVKEAATREELAWSKRLESFRKDVECFFGILKGRFRSLKLRILFR 244
            + L  +DG E + + ++L+VDGGYH+     C V+   T++ELA+ K+LES RKD+ECFFGILKGRFR LK+ +L+R
Sbjct:  281 FTLLGEDGSEFEERGLYLIVDGGYHK-----CPVQFPVTQDELAFRKQLESVRKDIECFFGILKGRFRILKMPLLYR 352          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2008.5168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KY50_9PHAE8.320e-1751.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE1.050e-1651.11Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAU4_9PHAE1.400e-1647.78Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTC6_9PHAE2.320e-1646.67DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K604_9PHAE2.750e-1647.19Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JP18_9PHAE4.390e-1640.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV45_9PHAE1.140e-1556.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQM6_9PHAE1.590e-1544.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBE2_9PHAE1.670e-1546.67Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHC3_9PHAE3.070e-1551.95DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2008contigH-paniculata_contig2008:11691..12566 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.1
Seed ortholog evalue1.8e-11
Seed eggNOG ortholog2880.D7FSK2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Plant transposon protein
EggNOG OGs2E2RF@1,2S9YA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size270
Cds size258
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2008.5168.1prot_H-paniculata_contig2008.5168.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2008 11691..12556 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929515.2443826-CDS-H-paniculata_contig2008:11690..118671622929515.2443826-CDS-H-paniculata_contig2008:11690..11867Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2008 11691..11867 -
1691480894.4166937-CDS-H-paniculata_contig2008:11690..118671691480894.4166937-CDS-H-paniculata_contig2008:11690..11867Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2008 11691..11867 -
1622929515.264167-CDS-H-paniculata_contig2008:12475..125561622929515.264167-CDS-H-paniculata_contig2008:12475..12556Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2008 12476..12556 -
1691480894.4375606-CDS-H-paniculata_contig2008:12475..125561691480894.4375606-CDS-H-paniculata_contig2008:12475..12556Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2008 12476..12556 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929515.2818363-UTR-H-paniculata_contig2008:12556..125661622929515.2818363-UTR-H-paniculata_contig2008:12556..12566Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2008 12557..12566 -
1691480894.449455-UTR-H-paniculata_contig2008:12556..125661691480894.449455-UTR-H-paniculata_contig2008:12556..12566Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2008 12557..12566 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2008.5168.1

>prot_H-paniculata_contig2008.5168.1 ID=prot_H-paniculata_contig2008.5168.1|Name=mRNA_H-paniculata_contig2008.5168.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=86bp
MAYKLRDKDGVEQVKSVHLVVDGGYHRRRSLVCSVKEAATREELAWSKRL
ESFRKDVECFFGILKGRFRSLKLRILFRKSAQVENV
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mRNA from alignment at H-paniculata_contig2008:11691..12566-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2008.5168.1 ID=mRNA_H-paniculata_contig2008.5168.1|Name=mRNA_H-paniculata_contig2008.5168.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=876bp|location=Sequence derived from alignment at H-paniculata_contig2008:11691..12566- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTACGGGTCGATGGCTTACAAGCTCCGCGATAAGGACGGCGTGGAACAGG TGAAGAGTGTTCACCTCGTCGTCGACGGAGGATATCACCGGGTGAGTCAA CTGCTGTCGTTTGATGGTCATTGCTGCTGCACCACCGTACGGAAATGCGT TGTATAGTTTTACGTTATTCGGCGACATTTTCTTCGTTTCTGACAAACAT GCCCCGTTTAATGTTGTGTATCAACCACACCGCCGACGATGTACAACTTT GTTGATCCCAACATAAATGGCTGCCCGAGGTCCTACTTTGTGAGCCGCAA CTCTAGACTCACCGTACATTCGTTTCAAATATTATCATCAGATGAGGTGC AAACTAGGAGACGGCAAGCTTCCTTGACATCAGTAGCAGCTACGCGAAAT CCGTAGGTTGCACCATGTGGCGTATCTTGTTTATAGCGCAGGCCATGGTA CCGCTCACAAGGAATTTGCTAGGATATCAAGACGCTTCTGTGTCGTTTTT TATGGTCGGTTTCAATCGTCGGTGTTGTCGAATGTTGTCTTCAACTTCAA TTTTCTTCGTATCGCTGATTGATCATTGATCAAGACCGAGATAAATCGTA CGAGCTGGGCGTTTCAATATCTGACACGGTTGGTCAGACGCCGCATAAGA ACAACGTGTATCGAAACCAGTTTTTTCTCGTTTCCCCTCTTATTTGCAGC GGAGGAGTCTAGTGTGCTCTGTAAAAGAAGCTGCAACTCGAGAGGAATTA GCGTGGAGTAAACGCCTCGAGAGCTTTCGAAAGGACGTGGAATGCTTCTT CGGTATTCTCAAGGGCCGCTTCAGAAGTTTGAAGTTGCGCATTCTTTTTA GGAAGTCCGCCCAGGTGGAAAATGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig2008:11691..12566-

>mRNA_H-paniculata_contig2008.5168.1 ID=mRNA_H-paniculata_contig2008.5168.1|Name=mRNA_H-paniculata_contig2008.5168.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at H-paniculata_contig2008:11691..12566- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTTACAAGCTCCGCGATAAGGACGGCGTGGAACAGGTGAAGAGTGT
TCACCTCGTCGTCGACGGAGGATATCACCGGATGGCTTACAAGCTCCGCG
ATAAGGACGGCGTGGAACAGGTGAAGAGTGTTCACCTCGTCGTCGACGGA
GGATATCACCGGCGGAGGAGTCTAGTGTGCTCTGTAAAAGAAGCTGCAAC
TCGAGAGGAATTAGCGTGGAGTAAACGCCTCGAGAGCTTTCGAAAGGACG
TGGAATGCTTCTTCGGTATTCTCAAGGGCCGCTTCAGAAGTTTGAAGTTG
CGCATTCTTTTTAGGAAGTCCGCCCAGGTGGAAAATGTGCGGAGGAGTCT
AGTGTGCTCTGTAAAAGAAGCTGCAACTCGAGAGGAATTAGCGTGGAGTA
AACGCCTCGAGAGCTTTCGAAAGGACGTGGAATGCTTCTTCGGTATTCTC
AAGGGCCGCTTCAGAAGTTTGAAGTTGCGCATTCTTTTTAGGAAGTCCGC
CCAGGTGGAAAATGTG
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