prot_H-paniculata_contig20079.5167.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig20079.5167.1
Unique Nameprot_H-paniculata_contig20079.5167.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length41
Homology
BLAST of mRNA_H-paniculata_contig20079.5167.1 vs. uniprot
Match: D8LBL3_ECTSI (Geranylgeranyl transferase type-2 subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBL3_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 7.980e-16
Identity = 35/40 (87.50%), Postives = 36/40 (90.00%), Query Frame = 0
Query:    1 MSGVYWGLMGMALMGRDLRAEMGAEELTEWVMRCQSEGGG 40
            MSGVYWGLMGMALMGRDLR EMGAE+L  WVMRCQ EGGG
Sbjct:   51 MSGVYWGLMGMALMGRDLRKEMGAEDLASWVMRCQHEGGG 90          
BLAST of mRNA_H-paniculata_contig20079.5167.1 vs. uniprot
Match: A0A7S2GW51_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GW51_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.800e-11
Identity = 27/40 (67.50%), Postives = 31/40 (77.50%), Query Frame = 0
Query:    1 MSGVYWGLMGMALMGRDLRAEMGAEELTEWVMRCQSEGGG 40
            MSGVYWGL  MAL+GRDLR EM  +EL EWV+ CQ + GG
Sbjct:    5 MSGVYWGLTAMALLGRDLREEMSIDELVEWVLSCQHDNGG 44          
BLAST of mRNA_H-paniculata_contig20079.5167.1 vs. uniprot
Match: W7TU56_9STRA (Geranylgeranyl transferase type-2 subunit beta (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TU56_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.640e-8
Identity = 25/40 (62.50%), Postives = 28/40 (70.00%), Query Frame = 0
Query:    1 MSGVYWGLMGMALMGRDLRAEMGAEELTEWVMRCQSEGGG 40
            MS VYW LMGMALMGR+L  EM   E+ EWV+ CQ   GG
Sbjct:   76 MSAVYWALMGMALMGRNLEEEMELSEIVEWVLECQHPNGG 115          
BLAST of mRNA_H-paniculata_contig20079.5167.1 vs. uniprot
Match: A0A4D9D171_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D171_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 2.030e-8
Identity = 25/40 (62.50%), Postives = 28/40 (70.00%), Query Frame = 0
Query:    1 MSGVYWGLMGMALMGRDLRAEMGAEELTEWVMRCQSEGGG 40
            MS VYW LMGMALMGR+L  EM   E+ EWV+ CQ   GG
Sbjct:   76 MSAVYWALMGMALMGRNLEEEMELSEIVEWVLGCQHPNGG 115          
BLAST of mRNA_H-paniculata_contig20079.5167.1 vs. uniprot
Match: A0A836C9T0_9STRA (Geranylgeranyl transferase type-2 subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9T0_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 3.240e-8
Identity = 28/42 (66.67%), Postives = 33/42 (78.57%), Query Frame = 0
Query:    1 MSGVYWGLMGMALMGRDLRAEMGAE-ELTEWVMRCQ--SEGG 39
            MSGVYWGLMG+ALMGRD++ EMG    L +WVMRC   +EGG
Sbjct:   33 MSGVYWGLMGLALMGRDVKEEMGGGGALADWVMRCYCPAEGG 74          
BLAST of mRNA_H-paniculata_contig20079.5167.1 vs. uniprot
Match: A0A812Y2E5_SYMMI (Geranylgeranyl transferase type-2 subunit beta (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Y2E5_SYMMI)

HSP 1 Score: 55.1 bits (131), Expect = 6.770e-8
Identity = 22/40 (55.00%), Postives = 29/40 (72.50%), Query Frame = 0
Query:    1 MSGVYWGLMGMALMGRDLRAEMGAEELTEWVMRCQSEGGG 40
            MSGVYWGL  M+L+G+DLR  M  +++  WVM C+ E GG
Sbjct:    1 MSGVYWGLTAMSLLGKDLRETMDIDQIVNWVMECKHESGG 40          
BLAST of mRNA_H-paniculata_contig20079.5167.1 vs. uniprot
Match: F0YFP4_AURAN (Geranylgeranyl transferase type-2 subunit beta n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFP4_AURAN)

HSP 1 Score: 53.9 bits (128), Expect = 2.970e-7
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = 0
Query:    1 MSGVYWGLMGMALMGRDLRAEMGAEELTEWVMRCQSEGGG 40
            MSGVYWGL  MAL+GRD+  EM  + +  WV+RCQ   GG
Sbjct:   49 MSGVYWGLTAMALLGRDVHKEMDGDAVVAWVLRCQHPCGG 88          
BLAST of mRNA_H-paniculata_contig20079.5167.1 vs. uniprot
Match: A0A2V0PHV7_9CHLO (Geranylgeranyl transferase type-2 subunit beta n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PHV7_9CHLO)

HSP 1 Score: 51.6 bits (122), Expect = 1.950e-6
Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = 0
Query:    1 MSGVYWGLMGMALMGRDLRAEMGAEELTEWVMRCQSEGGG 40
            MSG+YWGL  MALMGR    EM  + + EWV RC+ EGGG
Sbjct:   50 MSGMYWGLTAMALMGR--LGEMDCDAVAEWVARCRKEGGG 87          
BLAST of mRNA_H-paniculata_contig20079.5167.1 vs. uniprot
Match: A0A7S3Y0P3_HETAK (Geranylgeranyl transferase type-2 subunit beta n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y0P3_HETAK)

HSP 1 Score: 50.8 bits (120), Expect = 3.640e-6
Identity = 22/40 (55.00%), Postives = 27/40 (67.50%), Query Frame = 0
Query:    1 MSGVYWGLMGMALMGRDLRAEMGAEELTEWVMRCQSEGGG 40
            MS VYWGL G+A MG+D    +   EL EWV+ CQ +GGG
Sbjct:   45 MSAVYWGLAGLATMGKDNVEGINKPELVEWVLSCQHDGGG 84          
BLAST of mRNA_H-paniculata_contig20079.5167.1 vs. uniprot
Match: A0A0D2N2Y4_9CHLO (Protein geranylgeranyltransferase type II n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2N2Y4_9CHLO)

HSP 1 Score: 48.1 bits (113), Expect = 3.260e-5
Identity = 21/40 (52.50%), Postives = 28/40 (70.00%), Query Frame = 0
Query:    1 MSGVYWGLMGMALMGRDLRAEMGAEELTEWVMRCQSEGGG 40
            MSG+YWGL  MAL+GR    EM  + + +WV+ CQ +GGG
Sbjct:   47 MSGMYWGLTAMALLGR--LEEMDTDAVAQWVLTCQKQGGG 84          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20079.5167.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D8LBL3_ECTSI7.980e-1687.50Geranylgeranyl transferase type-2 subunit beta n=1... [more]
A0A7S2GW51_9STRA1.800e-1167.50Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
W7TU56_9STRA1.640e-862.50Geranylgeranyl transferase type-2 subunit beta (Fr... [more]
A0A4D9D171_9STRA2.030e-862.50Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A836C9T0_9STRA3.240e-866.67Geranylgeranyl transferase type-2 subunit beta n=1... [more]
A0A812Y2E5_SYMMI6.770e-855.00Geranylgeranyl transferase type-2 subunit beta (Fr... [more]
F0YFP4_AURAN2.970e-757.50Geranylgeranyl transferase type-2 subunit beta n=1... [more]
A0A2V0PHV7_9CHLO1.950e-660.00Geranylgeranyl transferase type-2 subunit beta n=1... [more]
A0A7S3Y0P3_HETAK3.640e-655.00Geranylgeranyl transferase type-2 subunit beta n=1... [more]
A0A0D2N2Y4_9CHLO3.260e-552.50Protein geranylgeranyltransferase type II n=1 Tax=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.50.10.20coord: 1..40
e-value: 1.1E-5
score: 26.5
IPR008930Terpenoid cyclases/protein prenyltransferase alpha-alpha toroidSUPERFAMILY48239Terpenoid cyclases/Protein prenyltransferasescoord: 1..40

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20079contigH-paniculata_contig20079:4342..4464 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20079.5167.1mRNA_H-paniculata_contig20079.5167.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig20079 4330..4464 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig20079.5167.1 ID=prot_H-paniculata_contig20079.5167.1|Name=mRNA_H-paniculata_contig20079.5167.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=41bp
MSGVYWGLMGMALMGRDLRAEMGAEELTEWVMRCQSEGGG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008930Terpenoid_cyclase/PrenylTrfase