mRNA_H-paniculata_contig20079.5167.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20079.5167.1
Unique NamemRNA_H-paniculata_contig20079.5167.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20079.5167.1 vs. uniprot
Match: D8LBL3_ECTSI (Geranylgeranyl transferase type-2 subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBL3_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 1.020e-18
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:    1 QHLRMSGVYWGLMGMALMGRDLRAEMGAEELTEWVMRCQSEGGG 132
            +HLRMSGVYWGLMGMALMGRDLR EMGAE+L  WVMRCQ EGGG
Sbjct:   47 EHLRMSGVYWGLMGMALMGRDLRKEMGAEDLASWVMRCQHEGGG 90
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BLAST of mRNA_H-paniculata_contig20079.5167.1 vs. uniprot
Match: A0A7S2GW51_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GW51_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.440e-14
Identity = 30/44 (68.18%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    1 QHLRMSGVYWGLMGMALMGRDLRAEMGAEELTEWVMRCQSEGGG 132
            +HLRMSGVYWGL  MAL+GRDLR EM  +EL EWV+ CQ + GG
Sbjct:    1 EHLRMSGVYWGLTAMALLGRDLREEMSIDELVEWVLSCQHDNGG 44
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BLAST of mRNA_H-paniculata_contig20079.5167.1 vs. uniprot
Match: A0A836C9T0_9STRA (Geranylgeranyl transferase type-2 subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9T0_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 5.000e-11
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:    1 QHLRMSGVYWGLMGMALMGRDLRAEMGAE-ELTEWVMRCQ--SEGG 129
            +HLRMSGVYWGLMG+ALMGRD++ EMG    L +WVMRC   +EGG
Sbjct:   29 EHLRMSGVYWGLMGLALMGRDVKEEMGGGGALADWVMRCYCPAEGG 74
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BLAST of mRNA_H-paniculata_contig20079.5167.1 vs. uniprot
Match: W7TU56_9STRA (Geranylgeranyl transferase type-2 subunit beta (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TU56_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 5.170e-11
Identity = 27/44 (61.36%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:    1 QHLRMSGVYWGLMGMALMGRDLRAEMGAEELTEWVMRCQSEGGG 132
            +HL+MS VYW LMGMALMGR+L  EM   E+ EWV+ CQ   GG
Sbjct:   72 EHLKMSAVYWALMGMALMGRNLEEEMELSEIVEWVLECQHPNGG 115
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BLAST of mRNA_H-paniculata_contig20079.5167.1 vs. uniprot
Match: A0A4D9D171_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D171_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 5.600e-11
Identity = 27/44 (61.36%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:    1 QHLRMSGVYWGLMGMALMGRDLRAEMGAEELTEWVMRCQSEGGG 132
            +HL+MS VYW LMGMALMGR+L  EM   E+ EWV+ CQ   GG
Sbjct:   72 EHLKMSAVYWALMGMALMGRNLEEEMELSEIVEWVLGCQHPNGG 115
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BLAST of mRNA_H-paniculata_contig20079.5167.1 vs. uniprot
Match: A0A7S3Y0P3_HETAK (Geranylgeranyl transferase type-2 subunit beta n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y0P3_HETAK)

HSP 1 Score: 58.9 bits (141), Expect = 5.940e-9
Identity = 25/44 (56.82%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    1 QHLRMSGVYWGLMGMALMGRDLRAEMGAEELTEWVMRCQSEGGG 132
            +HLRMS VYWGL G+A MG+D    +   EL EWV+ CQ +GGG
Sbjct:   41 EHLRMSAVYWGLAGLATMGKDNVEGINKPELVEWVLSCQHDGGG 84
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BLAST of mRNA_H-paniculata_contig20079.5167.1 vs. uniprot
Match: F0YFP4_AURAN (Geranylgeranyl transferase type-2 subunit beta n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFP4_AURAN)

HSP 1 Score: 58.9 bits (141), Expect = 5.980e-9
Identity = 24/44 (54.55%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:    1 QHLRMSGVYWGLMGMALMGRDLRAEMGAEELTEWVMRCQSEGGG 132
            +++RMSGVYWGL  MAL+GRD+  EM  + +  WV+RCQ   GG
Sbjct:   45 EYMRMSGVYWGLTAMALLGRDVHKEMDGDAVVAWVLRCQHPCGG 88
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BLAST of mRNA_H-paniculata_contig20079.5167.1 vs. uniprot
Match: A0A2P4XZ20_9STRA (Protein geranylgeranyltransferase type II n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XZ20_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 3.980e-8
Identity = 22/44 (50.00%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    1 QHLRMSGVYWGLMGMALMGRDLRAEMGAEELTEWVMRCQSEGGG 132
            +H+R+SG+YWG+  +AL+GR+  +EMG +E+ +WVM+CQ   GG
Sbjct:  338 EHMRVSGLYWGVGALALLGRE--SEMGPDEIVDWVMQCQDPSGG 379
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BLAST of mRNA_H-paniculata_contig20079.5167.1 vs. uniprot
Match: A0A812Y2E5_SYMMI (Geranylgeranyl transferase type-2 subunit beta (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Y2E5_SYMMI)

HSP 1 Score: 55.8 bits (133), Expect = 4.150e-8
Identity = 22/40 (55.00%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:   13 MSGVYWGLMGMALMGRDLRAEMGAEELTEWVMRCQSEGGG 132
            MSGVYWGL  M+L+G+DLR  M  +++  WVM C+ E GG
Sbjct:    1 MSGVYWGLTAMSLLGKDLRETMDIDQIVNWVMECKHESGG 40
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BLAST of mRNA_H-paniculata_contig20079.5167.1 vs. uniprot
Match: A0A7S0STK9_9STRA (Geranylgeranyl transferase type-2 subunit beta (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0STK9_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 7.240e-8
Identity = 21/39 (53.85%), Postives = 27/39 (69.23%), Query Frame = 1 
Query:    1 QHLRMSGVYWGLMGMALMGRDLRAEMGAEELTEWVMRCQ 117
            QH RMSG+YWGL  M L+GRD+  EM    +  WV++CQ
Sbjct:   45 QHFRMSGIYWGLTSMCLLGRDIYTEMDGNNIINWVIQCQ 83
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20079.5167.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBL3_ECTSI1.020e-1886.36Geranylgeranyl transferase type-2 subunit beta n=1... [more]
A0A7S2GW51_9STRA1.440e-1468.18Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A836C9T0_9STRA5.000e-1167.39Geranylgeranyl transferase type-2 subunit beta n=1... [more]
W7TU56_9STRA5.170e-1161.36Geranylgeranyl transferase type-2 subunit beta (Fr... [more]
A0A4D9D171_9STRA5.600e-1161.36Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S3Y0P3_HETAK5.940e-956.82Geranylgeranyl transferase type-2 subunit beta n=1... [more]
F0YFP4_AURAN5.980e-954.55Geranylgeranyl transferase type-2 subunit beta n=1... [more]
A0A2P4XZ20_9STRA3.980e-850.00Protein geranylgeranyltransferase type II n=1 Tax=... [more]
A0A812Y2E5_SYMMI4.150e-855.00Geranylgeranyl transferase type-2 subunit beta (Fr... [more]
A0A7S0STK9_9STRA7.240e-853.85Geranylgeranyl transferase type-2 subunit beta (Fr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20079contigH-paniculata_contig20079:4330..4464 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.0
Seed ortholog evalue5.9e-13
Seed eggNOG ortholog2880.D8LBL3
Preferred nameRABGGTB
KEGG rclassRC00049
KEGG koko:K02211,ko:K05956,ko:K12373
KEGG ReactionR00022,R06004,R11316
KEGG Pathwayko00511,ko00513,ko00520,ko00531,ko00603,ko00604,ko01100,ko04142,ko05202,map00511,map00513,map00520,map00531,map00603,map00604,map01100,map04142,map05202
KEGG ModuleM00079
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003008,GO:0003674,GO:0003824,GO:0004659,GO:0004661,GO:0004663,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005968,GO:0006464,GO:0006605,GO:0006612,GO:0006807,GO:0006810,GO:0006886,GO:0006888,GO:0007275,GO:0007600,GO:0007601,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0008289,GO:0008318,GO:0009555,GO:0009987,GO:0010941,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0016740,GO:0016765,GO:0017016,GO:0017137,GO:0018342,GO:0018344,GO:0019538,GO:0019840,GO:0019899,GO:0022607,GO:0022622,GO:0031267,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0034613,GO:0036211,GO:0042886,GO:0042981,GO:0043067,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0043687,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045184,GO:0046872,GO:0046907,GO:0046914,GO:0046982,GO:0046983,GO:0048193,GO:0048229,GO:0048364,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050877,GO:0050953,GO:0051020,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0065003,GO:0065007,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0090150,GO:0097354,GO:0099402,GO:0140096,GO:1901564,GO:1902494,GO:1990234,GO:1990778
EggNOG free text desc.Prenyltransferase
EggNOG OGsCOG5029@1,KOG0366@2759
Ec32 ortholog descriptionputative Rab geranylgeranyl transferase type II beta subunit
Ec32 orthologEc-27_003530.1
EC2.5.1.60,2.7.11.22,2.7.11.23,3.2.1.52
COG Functional cat.O
CAZyGH20
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko01006,ko03021,ko03110,ko04131
Exons1
Model size135
Cds size123
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929515.1597733-UTR-H-paniculata_contig20079:4329..43411622929515.1597733-UTR-H-paniculata_contig20079:4329..4341Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20079 4330..4341 +
1691480894.3842647-UTR-H-paniculata_contig20079:4329..43411691480894.3842647-UTR-H-paniculata_contig20079:4329..4341Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20079 4330..4341 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929515.1872032-CDS-H-paniculata_contig20079:4341..44641622929515.1872032-CDS-H-paniculata_contig20079:4341..4464Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20079 4342..4464 +
1691480894.3980718-CDS-H-paniculata_contig20079:4341..44641691480894.3980718-CDS-H-paniculata_contig20079:4341..4464Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20079 4342..4464 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20079.5167.1prot_H-paniculata_contig20079.5167.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20079 4342..4464 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20079.5167.1

>prot_H-paniculata_contig20079.5167.1 ID=prot_H-paniculata_contig20079.5167.1|Name=mRNA_H-paniculata_contig20079.5167.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=41bp
MSGVYWGLMGMALMGRDLRAEMGAEELTEWVMRCQSEGGG*
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mRNA from alignment at H-paniculata_contig20079:4330..4464+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20079.5167.1 ID=mRNA_H-paniculata_contig20079.5167.1|Name=mRNA_H-paniculata_contig20079.5167.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=135bp|location=Sequence derived from alignment at H-paniculata_contig20079:4330..4464+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCACCTCCGTATGTCCGGGGTGTACTGGGGCCTGATGGGGATGGCGCT
CATGGGACGGGACCTGAGAGCGGAGATGGGCGCGGAAGAGCTGACCGAGT
GGGTGATGCGTTGTCAAAGCGAAGGCGGAGGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig20079:4330..4464+

>mRNA_H-paniculata_contig20079.5167.1 ID=mRNA_H-paniculata_contig20079.5167.1|Name=mRNA_H-paniculata_contig20079.5167.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=246bp|location=Sequence derived from alignment at H-paniculata_contig20079:4330..4464+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCGGGGTGTACTGGGGCCTGATGGGGATGGCGCTCATGGGACGGGA
CCTGAGAGCGGAGATGGGCGCGGAAGAGCTGACCGAGTGGGTGATGCGTT
GTCAAAGCGAAGGCGGAGGGTGAATGTCCGGGGTGTACTGGGGCCTGATG
GGGATGGCGCTCATGGGACGGGACCTGAGAGCGGAGATGGGCGCGGAAGA
GCTGACCGAGTGGGTGATGCGTTGTCAAAGCGAAGGCGGAGGGTGA
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