mRNA_H-paniculata_contig20071.5166.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20071.5166.1
Unique NamemRNA_H-paniculata_contig20071.5166.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20071.5166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20071contigH-paniculata_contig20071:117..1141 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size242
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929515.1032093-CDS-H-paniculata_contig20071:118..2201622929515.1032093-CDS-H-paniculata_contig20071:118..220Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20071 119..220 -
1691480894.3627968-CDS-H-paniculata_contig20071:118..2201691480894.3627968-CDS-H-paniculata_contig20071:118..220Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20071 119..220 -
1622929515.1204019-CDS-H-paniculata_contig20071:1003..11411622929515.1204019-CDS-H-paniculata_contig20071:1003..1141Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20071 1004..1141 -
1691480894.37357-CDS-H-paniculata_contig20071:1003..11411691480894.37357-CDS-H-paniculata_contig20071:1003..1141Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20071 1004..1141 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20071.5166.1prot_H-paniculata_contig20071.5166.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20071 119..1141 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20071.5166.1

>prot_H-paniculata_contig20071.5166.1 ID=prot_H-paniculata_contig20071.5166.1|Name=mRNA_H-paniculata_contig20071.5166.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp
EEELSSISSSPLLANPATAIAITNGGGGHLSVPGQSPSPPNASIVKIPTG
SQGSEYRKTAGFPRALKTRKTGTGASSLAA
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mRNA from alignment at H-paniculata_contig20071:117..1141-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20071.5166.1 ID=mRNA_H-paniculata_contig20071.5166.1|Name=mRNA_H-paniculata_contig20071.5166.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1025bp|location=Sequence derived from alignment at H-paniculata_contig20071:117..1141- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGAAGAGCTCTCGTCAATAAGCTCTTCGCCCTTACTGGCTAACCCAGC
TACAGCGATCGCCATAACCAATGGCGGCGGCGGCCATCTATCCGTTCCGG
GGCAATCGCCTTCACCGCCAAATGCTTCAATAGTTAAGGTGAAGTGCTGT
GGAAACCAGCCACGGGAGTGGTACAAGCTGTATGTAGGTCATCGTTGTCA
GCGCAGCGCCAAATGTCTGTGTGTCAAGGGGCAAGCAAGGCAAGCAAGCA
AGGTTTCTCATTAGCTGAAAGAAAAAACTTGAATTTTGACGCGAGGGATT
TCAGTTAGTATTACTGCAAAACCTGTGGGGCGACTTGCGACCCCCGTGAA
AATTGTGGAGAGGGGATGCAGGTTTGAGTTGGTCCTTTGGAAGGGGACCT
GGGCGCGTTTGCAAGGAGGTATGCTGTCGCAGGGGTAACTGATTTATCAC
ATAGCCGAATCAGCGGCCAAGGGTCTGATTTCCCAAATTTATGGTAGCAT
TCACACAACGCAAACACGTACAAGACCAGAACGGTAAATACTCGAATATT
GACGCGCGCACGTGGTGCAAACTGTAGCTCGGTGTCTAGCTCCCACGACA
ACGAACAACCGTGGCATGACATTTCTCACTTCCCCACCCGCCCCCTATCT
TACTTTTTAAGGGGAAATTGGACGTGTTGATCACCTTGACCTCAGATTTC
TTGCAACAGTCCGCTGTGTGTCGCTTTCACGACTCTGGCACTCCCGCAAG
CCCCGATGAATACACACACCCCGACAGGAAAACCGCTACAGCGCCGACCA
CTAACCCAACCTTAGTCCTAACCCCTAATCGCGACCCCAAATATTTTCAT
CCACTCCACCCATGGTCTAAGAACGCATTAACCCCATCCCTAAACTTACT
ATCTCCCCTACCCCCACAAAGATCCCGACCGGATCGCAAGGGTCCGAATA
CCGCAAGACAGCTGGCTTTCCGAGGGCACTAAAAACGAGGAAAACGGGAA
CAGGCGCGTCGTCGCTCGCTGCGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig20071:117..1141-

>mRNA_H-paniculata_contig20071.5166.1 ID=mRNA_H-paniculata_contig20071.5166.1|Name=mRNA_H-paniculata_contig20071.5166.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at H-paniculata_contig20071:117..1141- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGAAGAGCTCTCGTCAATAAGCTCTTCGCCCTTACTGGCTAACCCAGC
TACAGCGATCGCCATAACCAATGGCGGCGGCGGCCATCTATCCGTTCCGG
GGCAATCGCCTTCACCGCCAAATGCTTCAATAGTTAAGGAAGAAGAGCTC
TCGTCAATAAGCTCTTCGCCCTTACTGGCTAACCCAGCTACAGCGATCGC
CATAACCAATGGCGGCGGCGGCCATCTATCCGTTCCGGGGCAATCGCCTT
CACCGCCAAATGCTTCAATAGTTAAGATCCCGACCGGATCGCAAGGGTCC
GAATACCGCAAGACAGCTGGCTTTCCGAGGGCACTAAAAACGAGGAAAAC
GGGAACAGGCGCGTCGTCGCTCGCTGCGATCCCGACCGGATCGCAAGGGT
CCGAATACCGCAAGACAGCTGGCTTTCCGAGGGCACTAAAAACGAGGAAA
ACGGGAACAGGCGCGTCGTCGCTCGCTGCG
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