mRNA_H-paniculata_contig2007.5165.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2007.5165.1
Unique NamemRNA_H-paniculata_contig2007.5165.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2007.5165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2007contigH-paniculata_contig2007:9885..16581 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size652
Cds size594
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2007.5165.1prot_H-paniculata_contig2007.5165.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2007 9941..16581 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929515.0101674-UTR-H-paniculata_contig2007:9884..99401622929515.0101674-UTR-H-paniculata_contig2007:9884..9940Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2007 9885..9940 +
1691480894.3366957-UTR-H-paniculata_contig2007:9884..99401691480894.3366957-UTR-H-paniculata_contig2007:9884..9940Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2007 9885..9940 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929515.0266247-CDS-H-paniculata_contig2007:9940..103781622929515.0266247-CDS-H-paniculata_contig2007:9940..10378Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2007 9941..10378 +
1691480894.347578-CDS-H-paniculata_contig2007:9940..103781691480894.347578-CDS-H-paniculata_contig2007:9940..10378Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2007 9941..10378 +
1622929515.041775-CDS-H-paniculata_contig2007:16425..165811622929515.041775-CDS-H-paniculata_contig2007:16425..16581Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2007 16426..16581 +
1691480894.3549135-CDS-H-paniculata_contig2007:16425..165811691480894.3549135-CDS-H-paniculata_contig2007:16425..16581Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2007 16426..16581 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2007.5165.1

>prot_H-paniculata_contig2007.5165.1 ID=prot_H-paniculata_contig2007.5165.1|Name=mRNA_H-paniculata_contig2007.5165.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=198bp
MGSGDPAASPREFNTGNIATMSLQHRRHGCRAISPLQCCVTIFSLMVTCC
FAVDVPVIALSLPQRTLATTTATITTADVDTGVMGYTALSNALGSVIRLA
VEDVNAEGTLLESGYNLTVTVLEQTTLAGTVQTVCNLITTSGNIYGVIGP
FLSSQAALLESLANDHLALPIVAPSAAAARAVNPSVRDVGGKADRSSD
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mRNA from alignment at H-paniculata_contig2007:9885..16581+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2007.5165.1 ID=mRNA_H-paniculata_contig2007.5165.1|Name=mRNA_H-paniculata_contig2007.5165.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6697bp|location=Sequence derived from alignment at H-paniculata_contig2007:9885..16581+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGACACCTTCAGCAAGTCCGAACACACTACATTGGTTCACACGACTGTA
GTGTAGATGGGATCGGGAGACCCCGCTGCTTCACCGAGGGAGTTCAATAC
TGGTAACATCGCCACTATGAGCCTACAACATCGCAGGCATGGTTGTCGCG
CCATTTCTCCTCTACAATGTTGTGTTACCATCTTCTCCCTGATGGTGACG
TGCTGCTTTGCTGTGGATGTGCCAGTAATAGCGTTGTCGTTACCTCAAAG
GACCCTTGCAACGACCACAGCAACAATAACAACAGCCGATGTGGACACGG
GCGTAATGGGGTACACAGCGCTGTCCAATGCGCTTGGGTCCGTGATACGA
CTTGCGGTCGAGGATGTCAATGCCGAAGGAACGCTGTTAGAATCCGGATA
CAACTTGACTGTAACTGTTCTCGAGCAAACGACGCTGGCGGGGACAGTTC
AAACGGTCTGTAATCTGATAACTACATCCGGCAATATTTATGGGGTAAGT
GTGTATTGCATCGACAGACTTTGTGTGAGGTGCAGTTAAGTAGCCGTGTT
GGTGTGCGTCGGCGCATTGTCCAAAGTACATGATGAGGTGCAGAGGTGAA
CTCTTGGATACGGGTCGCACACAGTGCACACTGCACCGCAACCCGCAGAA
GAGTCGGCGAAAAGTGTATGGTAGCTCATGTGTCGGCGTACAATTGTGCT
TGTTCTGTCTGTGGCATCGATAGTGAGCGGTTCAGCTGACAGTATGGTAT
GTGGGACACAATACGTACCGACTGTGTACTACATATCGTTTGTCTTGTTC
TTGGTATATTCTTTTCTGCAATAGCACAGACTTTTTTGCTATTTTTCGGC
ACTGATCTTGAATATTACCGACACACAGCGTAGCAAGGAGACAGACACTG
TTAGTTGCAAGCGTTAGTAGCTGCGGAGTCTGACGTCTGATGACATGTTG
AGCAAGACGCTACAATCAGCGGCCATGTGCGTTGCTCATGTTATCGAAAG
ATAAATCCTGAATTTTTGAAGAGTGTCTACGCAAAAACGAATTCCTTTTG
CAAAATCCCATGCAGTGCCGCACCCGAGCTCACCCACACCAACGTCTCGG
TACGATAGGAATTCCAATTTCCTTTTCAAAAATCGTCTGTTTCGAGAGAT
ACGACTAGTCACTGGCGCTCCCAACCTAGTTGCTATTCGTGTTCCTGTTC
GGCCTTGATATATTTTTCTGGAAATGAGAATCGTTTTTGAAAGTCCGAAA
GACTTTCTCAGAAACGATTTCACCCCCCGGACAAACCAAGCTTATTTCCA
CGACGATACACGTATTGTAAAAAAGCAGCACTATAATAAATATAACAATT
GAAGTCATTGGCATGAGACCTAATACCATACCAAAAAGAAGAGGTTCAAT
CATAATATAAATGTATCAAAAATATAATTATAGATGAACATTAGAAAATA
GTAAAATGATTTTTTAAATAGAAATCCTTTTTCGAATCAAAACAGTATTT
TCTCTTTAATGATATAGTTCATATTAATTATATTAGCGAAAACCAACAAA
AGCTTGCAATCGAAACGCAAGCAATAAAAAAGGAACTGGAACAATTGGTA
ATAATTTCTCTGAACCTCAATACCTCGTACACTTTCACCTATAGCCATTA
TTTGGTTAGTCTAGCTGATTTCGTTCCTTGTTGCCAAATAAAAATAGTAG
AGGAATATTAGCCTATTGTCCATCGACTACGCTTTTCAGCCTCGCCTTAG
AACAATAGGTAATAATATAGGAATACTTTCAAATGGTTTTCACAAAACAC
TGAGAGTATTCGCCTGGGTTTCAGAATGGGCTCGTGTGTTCTATGTGCCC
CAGACCTCTACGACTGCTAATAATACTCATAAATCGAACGAACAGGGATG
GGTACTTTAACCTATACGTCCGCTCATTCTGAAACTCAGGCGAATAATTT
CAGTTTTTTGTATAGATCATTTGCCAGTATTCGTATGTGTCCGGAGGGTG
AACGATTTTGTTTAATCGTTTTTGTTACACCGGTGATTTCGCTCAACCGA
TTAGAGGAGGTAGTTCAGGAATCATTTTTTCGACCCGATAAAATCCCCTG
AGGCCATCTCCTATCGTGCCAACAAAAATATTTCAGGCAAAATGACAAAA
TTCCATTTTGTTACTGTGAAATAAAATGATCGGGAAAATTGATAGCTCAT
TTTGTGGGGTCGGACCTGACTCAAAAACGTAAAATGTCACTAGTTGAATG
TTTGATGACGTTTTGCTAGCGGGCGGCGCAATTAAGTCGAGAGAATTTCG
AACACACGAACTCTCGTCCAGCACACCCGCTGGAAGTATGACCGGAAAAG
GAATCGGAACGCAGCATGATCGCCCACGCGGATGCTGTGTAGTCTTTTCG
GGGGTACACACGTCGCGTGCGCTTCTCATGAGACTCGTTCTCTTCGTCAT
CAACCATGCGACGAGCATTCGCCGCTGCACCCATGCGTCGACTGCGTCTG
TCGTCTCGTCTAGAATGTCTACGGCCGCCACTACAGCAGCGAGCGCCGCC
GATATAAACGATTGCCATTCCTGCAGGTCTTTCACAGGGCGGCTGGGCTT
ACACGTTGGATTGTCTACGTGCTTCGTACTGGTATCTGTGACCAGCGCGG
GTGTTTTAGTGTGGGCTATGAAACATCATCCAGGACAGGACGCCTGTGTA
TATCATTTCCCATTTATATGTTTGTGCGGGGGTCTCATCCTCCAGTCAAA
ATAGTGCGAATTTTATTACTCGTGGAGCTGTCAATCCTCCCCCACCATAA
AATTCGTGTGAAATAACTGTATTTTTGACACCATCAAATGATGGACAAAA
AATCTCCAGTGAAGAAATTGGGATTTGTGACTTTGACCGGAGTTTTTTTA
CACCATAGAGGATGACCTTATTCTGAAATTTGCAGGGACTTTCTCGGTAC
AGGTACCCAGTACCGCGTGGAGGATTGTTGAAACGCGGACAACAAGAATA
TTGTTGAGAATATGTACTGTGTTGTCTTTTGGAAAGGACAAGTACCGAGA
GACATCCCTCTGGGAGAAATTCGCGCAGTGTAATATTTTCTGAAGTCCAA
GGTAGTATCGTGTGAAATGCATCTTGATTACCATGGAAAACCACCGTGGC
CACAGCACGGTAATCACGCACTATTTAAGATGAGTAAGATCGACAACTGT
TTCCCACCGGTCCTGAGTTAGGGTTAGGGTGACAAAGCGTTTTTCTCCAT
CCGTGTGCTGTGAGGCGAGTTACAAGTGCTGCAGTCGTGCCCACTCTGCC
CGCAGTCCTCCTGCCCTCGTTCTTAACCCCTGTGCCACCCGAGTCTGAAG
AACAATAAGGGCACATGATAGTCCTGCGGCGAAACCGCCTCGAAAGAAGG
GGGGGGGTCCTTTTGACGAGAGGGGGAGGTCGCTTCCGACCACGTAATGC
TGGAGTATGGTGGTGAATTGTGCACGAAAAATTCACCCAACAGCCAATCA
TTAACCTGTTGTCTCCCATACATTTCTCAAGTGTTTTCGGGATGACGGGA
TCCCTACGCAATCCCTCGAGCGGTTTATTGGGTATTAGCAAAACGCGCAG
TTTTAGCCATTGATTTTCGGGCAGTTGCGTATTTTTTGGGCGACGTCCTT
TGGTCTCGTTGGTCGTGTTTTGTGGGCGCCACAGACGCTTCGTATCGACA
GTGAGGACGAGAGCGATGGCAGCTCATGGTATGCCTGAGTAAGTACCCTA
CCACCGGGGCTGCGGCTGATGCTTTTATTAACGGCACAGATGGAGTTGAG
CGACAAATATTTCAGCGTTTTGTTGCCTGCCGGTGTTGGAACAGCGCCGC
AAGAGCCATGGTGGTGCTTTTGATATAATGTCCTGGCGTGTCTCTGTACT
GCACACACGCCTTGTAGAGTCAGTCACTCATGATGTGCTTTGTGCTTTGC
ATTTCAATTATATGCTACTCTTGTGGAACTCGAAACCATGCCAACTCCTG
TCCGTGTGTCTGCAATAATAATTGCAGGACCGTCTGCACTGTCTATAAAG
GTCCCTATCTCCCTAATGATGTCGTGAGCGTATGTCACAAAAGAAACTCA
AAGTATTTTGGCCTTTTTCCGAGAAGGGGTTGTATAGAGATTGTACACGA
CCGAGTGCCGTAAGGATAATTTTCAATATTTTACTGCAAGATGAATACCT
TTGTTCTTCCCTGTGGCTCTGGAACTCCTGTTGGTTTGCGGGATATACCA
ATGGTTGGCTGATGGACCGTCGCGCGGGATTCAGCAGAAAATGTGTCATC
GCTAATACGAAAGTATATAATAATCGAGTAAAATATCGTTGACACGTTTA
CACTTGTGTTGTAAACAACCAAATTTGTCGATGGAAGATATTACAAGCAG
TTGTCTGATTGGAACAACGTCTACCTCTCTTTTAAACACACCAAAAACAG
ATGTCTCTGCCCCCCACCGCACACAAAGCAGTGAATCCAAAAATATAGAT
AGCTAGAAGTATTAACATCTGTATCTGCCTCCGCTCCAGCGTGGCAGTTG
CGGTATTGGTGATTATTCCAGAGGTAGCATTCGCGTCAAACATCCAAGAG
TATGACAAAAAGTGTGATGCAGTCAGTAGAGTACGGAGTATATGGTGTAC
ACTTGCAGCAAAGCGGTTAAGAAGTATCTGTAGCCAACAGCGCAGTCACC
GCAGCAGAGCAGTACTGCTGTGCTGCACGCAGCCAAGTAGCAACAGGCAC
GTCAGCGGGAGCGGTGCGACATGTCCAGTCGCAACTTCGAACCGCTACTC
GGTCCTGGCGGAAGAAGAAGCTGTTGTACCAATACGCACACACCAGCAGT
GGTCCTCGCAACGACTGGCAGACAATGGTGACAGCGCCTGCTTCTAGTAA
GCTGCGGTGCAACAGTAGTTAGTACAGACAGTGCGTTTCAAGGGAATTTT
GAGAGAACGCAAGAAATGACCCTGCCAGGGCATCCACATATAAACTTTTC
TCTCGATCCCAGTTCAAGTGAAAACCTCAAGGTGAATATCGCTTCCTCAT
GTGGCAACTTATAGAGTAGTGTCATTCTTGTAGTGAGCTGTGTCGCTTTC
AGAGGTATCATTTGCCCTGAAGCAGCATCGATTGGCACGGGCTGCAACCG
GTGAGCAACGCTACCAAAACACGGCAAGACAGATTTCTCGGCTCTGGAAG
CGTTTACCAACTCAAATATTGCTCCCAAGATCAGCCTGAGACATGCTCAC
GTTGCCCCGGCTCCTATGCCACATAGAGCTCAGGCGTTGTGCAGGGACTT
GACCAAAGACATAGGACCGGGCTGCTGTTATTTCTCGTCGATCCATGGAT
AATGACCTATACGATATATCCCGTGATCCATACGACAAGAAAGCCTTCTG
GGGCGAGGGCGTTTTTTTCATCGTTTCACATGGTTTGCAACGCAGATGTT
GAATTGTAGATGTGAACCATAAATCAATCACGATCAACACGAAAACCAGA
ACTAACACATAAGCCCGCAGGTGAGATACACGTATAGCACCTTTGCAGCT
GCCTATCCGCGAAATGGGGGGTCATTCTTGGTGCAGTTGAGAGGCGTCGC
CCTGCGTCAAAGTGCTGATGTACAGGAAAAACATAGCCGTTTTCCAGATC
AACTATTCAGCGAATTCGCGAGTACAGCAATTTACAGGCAGTTTCAGTAC
AGACACTATGTAACTTTCATAGACACGCAGAGAGGGCCTCCGGCCTCGCA
GTACATCACATTGAGCTCAGTACTAAGATCCGACAAAGGGTGCCTAATAT
CCTCCTACGTGGCCAGGGGGAGGAGGGGGGACGTTCTCATGTTTTTCATG
TCATAGTTGTTAGGTCATTGACCACGCGTTCTCGGGAGGACGGGGGGGGG
CGGGGTACTCATGTTATACGCATGCCGTAGTTGTCAAACTATTGACCACG
CGTCCTCAAGAGAATGGAGCGTCGTTTTCACGGTGGGCTTTAACCCTCCC
CTCCTGCAGAGATACGCGGGGGGAGTATGGGAAGGAAACCAGGAGGTAAA
GAGTTGGAAATAGTTGAGATAAAAGCAGTGAAGGTGGTACTAGGATGTTC
CCAACGTACCAGCAATGTAGCAGTAAGGGCAGAGCTGGGCATACACTCCC
TGAATACGAGAAGAGACGTGAGGAAGCTGAAGTGGCAGTACAGGCTAAAT
AAAATGGGAGAAAAGAGACTGCCAAAAATCGCAAGAAAAGCAGAGTAGAA
ATCACGTCAAAAGATAGACGACGTTCCGAGTGGGATACCGTAGGAGGGAA
AATGTGAAAAGACCTGGAAATTTCTGGAGAGGAGATGATGAAGAGCAAGA
GCATGAGTTGATTTAAGGAGTAATCAGCGGATGCAATTGCTGTTAGAGGA
GAACATCGACTGAGAAGAGAAGCTGCAAGTAAGGAAGGTTTGAAAGTATA
TCAAAGACTAGATGAAGAAATAGGGTTCAAAGGGTATCTATTTGGACCAT
GAACACTTCCTAACCCCCAGTTGCCCCTCCGTCCTTCCCAGGTGATAGGT
CCGTTCTTGTCGTCGCAAGCAGCACTGCTGGAGTCTCTGGCCAATGACCA
CTTAGCTTTACCGATTGTTGCGCCGTCGGCCGCCGCAGCTCGTGCGGTTA
ATCCTTCGGTCAGAGACGTCGGTGGAAAAGCCGACCGCTCCTCGGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig2007:9885..16581+

>mRNA_H-paniculata_contig2007.5165.1 ID=mRNA_H-paniculata_contig2007.5165.1|Name=mRNA_H-paniculata_contig2007.5165.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1188bp|location=Sequence derived from alignment at H-paniculata_contig2007:9885..16581+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGATCGGGAGACCCCGCTGCTTCACCGAGGGAGTTCAATACTGGTAA
CATCGCCACTATGAGCCTACAACATCGCAGGCATGGTTGTCGCGCCATTT
CTCCTCTACAATGTTGTGTTACCATCTTCTCCCTGATGGTGACGTGCTGC
TTTGCTGTGGATGTGCCAGTAATAGCGTTGTCGTTACCTCAAAGGACCCT
TGCAACGACCACAGCAACAATAACAACAGCCGATGTGGACACGGGCGTAA
TGGGGTACACAGCGCTGTCCAATGCGCTTGGGTCCGTGATACGACTTGCG
GTCGAGGATGTCAATGCCGAAGGAACGCTGTTAGAATCCGGATACAACTT
GACTGTAACTGTTCTCGAGCAAACGACGCTGGCGGGGACAGTTCAAACGG
TCTGTAATCTGATAACTACATCCGGCAATATTTATGGGATGGGATCGGGA
GACCCCGCTGCTTCACCGAGGGAGTTCAATACTGGTAACATCGCCACTAT
GAGCCTACAACATCGCAGGCATGGTTGTCGCGCCATTTCTCCTCTACAAT
GTTGTGTTACCATCTTCTCCCTGATGGTGACGTGCTGCTTTGCTGTGGAT
GTGCCAGTAATAGCGTTGTCGTTACCTCAAAGGACCCTTGCAACGACCAC
AGCAACAATAACAACAGCCGATGTGGACACGGGCGTAATGGGGTACACAG
CGCTGTCCAATGCGCTTGGGTCCGTGATACGACTTGCGGTCGAGGATGTC
AATGCCGAAGGAACGCTGTTAGAATCCGGATACAACTTGACTGTAACTGT
TCTCGAGCAAACGACGCTGGCGGGGACAGTTCAAACGGTCTGTAATCTGA
TAACTACATCCGGCAATATTTATGGGGTGATAGGTCCGTTCTTGTCGTCG
CAAGCAGCACTGCTGGAGTCTCTGGCCAATGACCACTTAGCTTTACCGAT
TGTTGCGCCGTCGGCCGCCGCAGCTCGTGCGGTTAATCCTTCGGTCAGAG
ACGTCGGTGGAAAAGCCGACCGCTCCTCGGACGTGATAGGTCCGTTCTTG
TCGTCGCAAGCAGCACTGCTGGAGTCTCTGGCCAATGACCACTTAGCTTT
ACCGATTGTTGCGCCGTCGGCCGCCGCAGCTCGTGCGGTTAATCCTTCGG
TCAGAGACGTCGGTGGAAAAGCCGACCGCTCCTCGGAC
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