mRNA_H-paniculata_contig2007.5164.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2007.5164.1
Unique NamemRNA_H-paniculata_contig2007.5164.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2007.5164.1 vs. uniprot
Match: A0A6H5JGA1_9PHAE (Carboxypeptidase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JGA1_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 2.810e-25
Identity = 45/62 (72.58%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:    1 DYTPEALADQVDWDALPGAGNLAVQGSFNQFAGYININKENGRRIFYWFFEAQENAEDAPVV 186
            DYTPEALAD+VDW  LPGA NL V+  F+ F+GYIN++ ENGR IFYWF EAQENAEDAPV+
Sbjct:   26 DYTPEALADKVDWSTLPGAENLEVKDGFSMFSGYINVDAENGRNIFYWFMEAQENAEDAPVI 87
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BLAST of mRNA_H-paniculata_contig2007.5164.1 vs. uniprot
Match: A0A150GS16_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GS16_GONPE)

HSP 1 Score: 59.3 bits (142), Expect = 7.750e-10
Identity = 28/64 (43.75%), Postives = 42/64 (65.62%), Query Frame = 1 
Query:    1 DYTPEALADQVDWDALPGAGNLAVQGSFNQFAGYININKENGRRIFYWFFEAQENAEDAPVVNA 192
            + TPEA ADQ+   ++PG GN       N F GYI +N+E+GRR+FY+F E++ +  + PV+ A
Sbjct:   40 ELTPEAAADQIL--SVPGFGNALPS---NHFGGYITVNEEHGRRLFYYFAESERDPANDPVIAA 98
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BLAST of mRNA_H-paniculata_contig2007.5164.1 vs. uniprot
Match: A0A087HF30_ARAAL (Carboxypeptidase n=1 Tax=Arabis alpina TaxID=50452 RepID=A0A087HF30_ARAAL)

HSP 1 Score: 58.5 bits (140), Expect = 2.300e-8
Identity = 28/61 (45.90%), Postives = 37/61 (60.66%), Query Frame = 1 
Query:    4 YTPEALADQVDWDALPGAGNLAVQGSFNQFAGYININKENGRRIFYWFFEAQENAEDAPVV 186
            Y+PEA+ D V    LPG  ++    SF  FAGY+ ++K NGR +FYWFFEA       P+V
Sbjct:   21 YSPEAMRDLVT--DLPGQSHV----SFRHFAGYVPVDKTNGRAMFYWFFEAMSYPNKKPLV 75
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BLAST of mRNA_H-paniculata_contig2007.5164.1 vs. uniprot
Match: A0A565CMJ0_9BRAS (Carboxypeptidase n=1 Tax=Arabis nemorensis TaxID=586526 RepID=A0A565CMJ0_9BRAS)

HSP 1 Score: 57.4 bits (137), Expect = 5.870e-8
Identity = 27/61 (44.26%), Postives = 37/61 (60.66%), Query Frame = 1 
Query:    4 YTPEALADQVDWDALPGAGNLAVQGSFNQFAGYININKENGRRIFYWFFEAQENAEDAPVV 186
            Y+PEA+ D V    LPG  ++    SF  +AGY+ ++K NGR +FYWFFEA       P+V
Sbjct:   27 YSPEAMRDLVT--DLPGQSHV----SFRHYAGYVPVDKTNGRAMFYWFFEAMSVPNQKPLV 81
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BLAST of mRNA_H-paniculata_contig2007.5164.1 vs. uniprot
Match: A0A835IPS0_9MAGN (Uncharacterized protein n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835IPS0_9MAGN)

HSP 1 Score: 55.8 bits (133), Expect = 6.940e-8
Identity = 23/47 (48.94%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:   46 LPGAGNLAVQGSFNQFAGYININKENGRRIFYWFFEAQENAEDAPVV 186
            LPG   L+V  SF  ++GY+ +N+E+GR +FYWFFEA E+    P+V
Sbjct:   38 LPG---LSVNVSFEHYSGYVTVNEESGRNLFYWFFEAVEDPSSKPLV 81
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BLAST of mRNA_H-paniculata_contig2007.5164.1 vs. uniprot
Match: A0A5A7PVQ7_STRAF (Carboxypeptidase n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7PVQ7_STRAF)

HSP 1 Score: 57.0 bits (136), Expect = 8.070e-8
Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:   46 LPGAGNLAVQGSFNQFAGYININKENGRRIFYWFFEAQENAEDAPVV 186
            LPG  N  V  SF+ +AGY+N++KE+GR +FYWFFEA E+    P+V
Sbjct:   45 LPGQ-NFNV--SFSHYAGYVNVSKESGRSLFYWFFEADEDPSSKPIV 88
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BLAST of mRNA_H-paniculata_contig2007.5164.1 vs. uniprot
Match: W7TR82_9STRA (Carboxypeptidase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TR82_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 8.140e-8
Identity = 30/61 (49.18%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:    4 YTPEALADQVDWDALPGAGNLAVQGSFNQFAGYININKENGRRIFYWFFEAQENAEDAPVV 186
            YT EALAD+V    LPG   L  + +F QFAGY+N+ K   + IFYW+ EA+E+ ++AP+V
Sbjct:  118 YTKEALADEVL--DLPG---LTEKVTFRQFAGYLNL-KGTQKNIFYWYVEAEESPDEAPLV 172
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BLAST of mRNA_H-paniculata_contig2007.5164.1 vs. uniprot
Match: A0A6D2IW29_9BRAS (Carboxypeptidase n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2IW29_9BRAS)

HSP 1 Score: 56.6 bits (135), Expect = 1.040e-7
Identity = 28/60 (46.67%), Postives = 36/60 (60.00%), Query Frame = 1 
Query:    7 TPEALADQVDWDALPGAGNLAVQGSFNQFAGYININKENGRRIFYWFFEAQENAEDAPVV 186
            +PEAL D V    LPG  ++    SF  +AGY+ +NK NGR +FYWFFEA       P+V
Sbjct:   23 SPEALKDLVT--DLPGQSHV----SFKHYAGYVPVNKTNGRAMFYWFFEATSLPNQKPLV 76
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BLAST of mRNA_H-paniculata_contig2007.5164.1 vs. uniprot
Match: A0A2R6S1K1_ACTCC (Carboxypeptidase n=1 Tax=Actinidia chinensis var. chinensis TaxID=1590841 RepID=A0A2R6S1K1_ACTCC)

HSP 1 Score: 55.8 bits (133), Expect = 2.060e-7
Identity = 25/48 (52.08%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:   43 ALPGAGNLAVQGSFNQFAGYININKENGRRIFYWFFEAQENAEDAPVV 186
            ALPG   +A    F+QF+GYI +N+E+GR +FYWF EA  N E  P+V
Sbjct:   35 ALPGQPTVA----FSQFSGYIGVNEEHGRALFYWFTEATTNPEKKPLV 78
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BLAST of mRNA_H-paniculata_contig2007.5164.1 vs. uniprot
Match: A0A830CLK8_9LAMI (Serine carboxypeptidase-like 22 n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830CLK8_9LAMI)

HSP 1 Score: 52.4 bits (124), Expect = 2.700e-7
Identity = 25/60 (41.67%), Postives = 37/60 (61.67%), Query Frame = 1 
Query:    7 TPEALADQVDWDALPGAGNLAVQGSFNQFAGYININKENGRRIFYWFFEAQENAEDAPVV 186
            T E   D++   ALPG   +     F+QF+GY+ +N+E+GR +FYW  EA  NA + P+V
Sbjct:    2 TKEQELDRIT--ALPGQPCV----KFSQFSGYVTVNQEHGRALFYWLTEAANNAHNKPLV 55
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2007.5164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JGA1_9PHAE2.810e-2572.58Carboxypeptidase n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
A0A150GS16_GONPE7.750e-1043.75Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A087HF30_ARAAL2.300e-845.90Carboxypeptidase n=1 Tax=Arabis alpina TaxID=50452... [more]
A0A565CMJ0_9BRAS5.870e-844.26Carboxypeptidase n=1 Tax=Arabis nemorensis TaxID=5... [more]
A0A835IPS0_9MAGN6.940e-848.94Uncharacterized protein n=1 Tax=Coptis chinensis T... [more]
A0A5A7PVQ7_STRAF8.070e-853.19Carboxypeptidase n=1 Tax=Striga asiatica TaxID=417... [more]
W7TR82_9STRA8.140e-849.18Carboxypeptidase n=2 Tax=Monodopsidaceae TaxID=425... [more]
A0A6D2IW29_9BRAS1.040e-746.67Carboxypeptidase n=1 Tax=Microthlaspi erraticum Ta... [more]
A0A2R6S1K1_ACTCC2.060e-752.08Carboxypeptidase n=1 Tax=Actinidia chinensis var. ... [more]
A0A830CLK8_9LAMI2.700e-741.67Serine carboxypeptidase-like 22 n=1 Tax=Phtheirosp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2007contigH-paniculata_contig2007:2255..2461 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.1
Seed ortholog evalue4.8e-07
Seed eggNOG ortholog2880.D7FGS2
KEGG rclassRC00597,RC00598,RC00784,RC02852
KEGG koko:K08249,ko:K13289,ko:K16296,ko:K16297
KEGG ReactionR01409,R02676,R02811
KEGG Pathwayko00460,ko01110,ko04142,ko04614,map00460,map01110,map04142,map04614
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004180,GO:0004185,GO:0005575,GO:0005576,GO:0005615,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005911,GO:0006508,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0008238,GO:0009056,GO:0009057,GO:0009505,GO:0009506,GO:0009719,GO:0009725,GO:0009741,GO:0009742,GO:0009755,GO:0009987,GO:0010033,GO:0014070,GO:0016787,GO:0017171,GO:0019538,GO:0023052,GO:0030054,GO:0030163,GO:0030312,GO:0032870,GO:0033993,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043401,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044421,GO:0044424,GO:0044444,GO:0044464,GO:0048545,GO:0050789,GO:0050794,GO:0050896,GO:0051603,GO:0051716,GO:0055044,GO:0065007,GO:0070008,GO:0070011,GO:0070887,GO:0071310,GO:0071367,GO:0071383,GO:0071396,GO:0071407,GO:0071495,GO:0071704,GO:0071944,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901700,GO:1901701
EggNOG free text desc.PFAM Peptidase S10, serine carboxypeptidase
EggNOG OGsCOG2939@1,KOG1282@2759
EC3.4.16.5,4.1.2.11
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko03110,ko04131,ko04147
Exons1
Model size207
Cds size207
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929514.9659202-CDS-H-paniculata_contig2007:2254..24611622929514.9659202-CDS-H-paniculata_contig2007:2254..2461Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2007 2255..2461 -
1691480894.3216884-CDS-H-paniculata_contig2007:2254..24611691480894.3216884-CDS-H-paniculata_contig2007:2254..2461Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2007 2255..2461 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2007.5164.1prot_H-paniculata_contig2007.5164.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2007 2255..2461 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2007.5164.1

>prot_H-paniculata_contig2007.5164.1 ID=prot_H-paniculata_contig2007.5164.1|Name=mRNA_H-paniculata_contig2007.5164.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=69bp
DYTPEALADQVDWDALPGAGNLAVQGSFNQFAGYININKENGRRIFYWFF
EAQENAEDAPVVNAYCTH*
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mRNA from alignment at H-paniculata_contig2007:2255..2461-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2007.5164.1 ID=mRNA_H-paniculata_contig2007.5164.1|Name=mRNA_H-paniculata_contig2007.5164.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=207bp|location=Sequence derived from alignment at H-paniculata_contig2007:2255..2461- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATTACACCCCTGAGGCCCTCGCGGATCAAGTGGATTGGGACGCCTTGCC
GGGCGCAGGAAATCTGGCAGTGCAGGGGTCATTCAACCAGTTCGCCGGTT
ACATCAACATCAATAAGGAGAACGGTCGAAGAATTTTCTATTGGTTTTTC
GAGGCTCAAGAAAATGCGGAGGATGCGCCTGTGGTAAATGCGTACTGTAC
TCACTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig2007:2255..2461-

>mRNA_H-paniculata_contig2007.5164.1 ID=mRNA_H-paniculata_contig2007.5164.1|Name=mRNA_H-paniculata_contig2007.5164.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at H-paniculata_contig2007:2255..2461- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATTACACCCCTGAGGCCCTCGCGGATCAAGTGGATTGGGACGCCTTGCC
GGGCGCAGGAAATCTGGCAGTGCAGGGGTCATTCAACCAGTTCGCCGGTT
ACATCAACATCAATAAGGAGAACGGTCGAAGAATTTTCTATTGGTTTTTC
GAGGCTCAAGAAAATGCGGAGGATGCGCCTGTGGTAAATGCGTACTGTAC
TCACTGAGATTACACCCCTGAGGCCCTCGCGGATCAAGTGGATTGGGACG
CCTTGCCGGGCGCAGGAAATCTGGCAGTGCAGGGGTCATTCAACCAGTTC
GCCGGTTACATCAACATCAATAAGGAGAACGGTCGAAGAATTTTCTATTG
GTTTTTCGAGGCTCAAGAAAATGCGGAGGATGCGCCTGTGGTAAATGCGT
ACTGTACTCACTGA
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