prot_H-paniculata_contig20061.5162.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig20061.5162.1
Unique Name	prot_H-paniculata_contig20061.5162.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	115

Homology

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BLAST of mRNA_H-paniculata_contig20061.5162.1 vs. uniprot
Match: D7FR23_ECTSI (KRR-R motif-containing protein 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR23_ECTSI)

HSP 1 Score: 202 bits (513), Expect = 1.200e-61
Identity = 99/110 (90.00%), Postives = 105/110 (95.45%), Query Frame = 0

Query:    1 MVRNKERFVKRRARLVGPEGSTLKALELLTGCYVLVQGNTVSAMGPFQGLKQVRKVVVDCMNNIHPVYNIKTLMIRRELAKDPNLQGENWERFLPQFHKKNVQRKKASWI 110
            MVRNKERFVKRRARLVGP+GSTLKALELLTGCYVLVQGNTVSAMG +QGLKQVRKVV DCMNN+HPVYNIKTLMIRRELAKDPNL+ ENWERFLPQFHKKNV+RKK + I
Sbjct:  128 MVRNKERFVKRRARLVGPDGSTLKALELLTGCYVLVQGNTVSAMGSYQGLKQVRKVVTDCMNNVHPVYNIKTLMIRRELAKDPNLKDENWERFLPQFHKKNVKRKKPAVI 237

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BLAST of mRNA_H-paniculata_contig20061.5162.1 vs. uniprot
Match: A0A7R9YG52_9STRA (KRR1 small subunit processome component n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YG52_9STRA)

HSP 1 Score: 181 bits (460), Expect = 2.880e-54
Identity = 87/110 (79.09%), Postives = 100/110 (90.91%), Query Frame = 0

Query:    1 MVRNKERFVKRRARLVGPEGSTLKALELLTGCYVLVQGNTVSAMGPFQGLKQVRKVVVDCMNNIHPVYNIKTLMIRRELAKDPNLQGENWERFLPQFHKKNVQRKKASWI 110
            +VRNKERFVKRR RL+GP+GSTLKALELLTGCYVLVQGNTVSAMGP++GLKQVRKVV+DCM NIHP+YNIKTLMI+RELAKDP L  + W+RFLP+F K+NV+RKK   I
Sbjct:  138 LVRNKERFVKRRQRLLGPDGSTLKALELLTGCYVLVQGNTVSAMGPYKGLKQVRKVVMDCMQNIHPIYNIKTLMIKRELAKDPTLADQPWDRFLPKFKKRNVKRKKPKTI 247

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BLAST of mRNA_H-paniculata_contig20061.5162.1 vs. uniprot
Match: A0A836CN64_9STRA (KRR1 small subunit processome component n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN64_9STRA)

HSP 1 Score: 181 bits (460), Expect = 5.690e-54
Identity = 88/114 (77.19%), Postives = 99/114 (86.84%), Query Frame = 0

Query:    1 MVRNKERFVKRRARLVGPEGSTLKALELLTGCYVLVQGNTVSAMGPFQGLKQVRKVVVDCMNNIHPVYNIKTLMIRRELAKDPNLQGENWERFLPQFHKKNVQRKKASWIEKDR 114
            MVRNKERFVKRR RLVGP+G+TLKALELLTGCY+LVQGNTV+ MG + GLKQ RKV+VDCMNNIHPVYNIKTLMIRRELAKDP L GE+W RFLP F+K+NV RKK   + + R
Sbjct:  146 MVRNKERFVKRRQRLVGPDGATLKALELLTGCYILVQGNTVACMGSYAGLKQARKVIVDCMNNIHPVYNIKTLMIRRELAKDPALAGEDWSRFLPSFNKRNVPRKKPRSVREKR 259

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BLAST of mRNA_H-paniculata_contig20061.5162.1 vs. uniprot
Match: A0A7S1UII9_9STRA (KRR1 small subunit processome component n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UII9_9STRA)

HSP 1 Score: 180 bits (456), Expect = 8.420e-54
Identity = 84/110 (76.36%), Postives = 100/110 (90.91%), Query Frame = 0

Query:    1 MVRNKERFVKRRARLVGPEGSTLKALELLTGCYVLVQGNTVSAMGPFQGLKQVRKVVVDCMNNIHPVYNIKTLMIRRELAKDPNLQGENWERFLPQFHKKNVQRKKASWI 110
            +VRNK+RFVKRR RLVGP+GSTLKALELLTGCYVLVQGNTVSAMGP +G+KQVRKVV+DCM NIHP+YNIKTLMI+RELAKDP L  ++W+RFLP+F K+NV+R+K   +
Sbjct:  143 LVRNKDRFVKRRQRLVGPDGSTLKALELLTGCYVLVQGNTVSAMGPHKGIKQVRKVVIDCMENIHPIYNIKTLMIKRELAKDPTLANQSWDRFLPRFQKRNVKRRKPQKV 252

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BLAST of mRNA_H-paniculata_contig20061.5162.1 vs. uniprot
Match: A0A1V9ZKL3_9STRA (KRR1 small subunit processome component n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZKL3_9STRA)

HSP 1 Score: 179 bits (455), Expect = 2.890e-53
Identity = 85/114 (74.56%), Postives = 99/114 (86.84%), Query Frame = 0

Query:    1 MVRNKERFVKRRARLVGPEGSTLKALELLTGCYVLVQGNTVSAMGPFQGLKQVRKVVVDCMNNIHPVYNIKTLMIRRELAKDPNLQGENWERFLPQFHKKNVQRKKASWIEKDR 114
            +VRNKERFVKRR RLVGP+G+TLKA+ELLT CYVLVQGNTVSAMGP+ GL+ VRK+V DC +N+HP+YNIKTLMI+RELAKDP LQGENWERFLP F KKN+Q KK   + + R
Sbjct:  133 LVRNKERFVKRRQRLVGPDGATLKAIELLTNCYVLVQGNTVSAMGPYSGLRHVRKIVEDCFHNVHPIYNIKTLMIKRELAKDPALQGENWERFLPVFKKKNIQTKKPHVVREKR 246

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BLAST of mRNA_H-paniculata_contig20061.5162.1 vs. uniprot
Match: A0A1V9ZXJ5_9STRA (KRR1 small subunit processome component n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZXJ5_9STRA)

HSP 1 Score: 178 bits (451), Expect = 1.180e-52
Identity = 84/106 (79.25%), Postives = 96/106 (90.57%), Query Frame = 0

Query:    1 MVRNKERFVKRRARLVGPEGSTLKALELLTGCYVLVQGNTVSAMGPFQGLKQVRKVVVDCMNNIHPVYNIKTLMIRRELAKDPNLQGENWERFLPQFHKKNVQRKK 106
            +VRNKERFVKRR RLVGP+G+TLKA+ELLT CYVLVQGNTVSAMGP+ GL+ +RK+V DC +NIHP+YNIKTLMI+RELAKDP LQGENW+RFLP F KKNVQ KK
Sbjct:  139 LVRNKERFVKRRQRLVGPDGATLKAIELLTNCYVLVQGNTVSAMGPYSGLRHIRKIVEDCFHNIHPIYNIKTLMIKRELAKDPALQGENWDRFLPVFKKKNVQTKK 244

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BLAST of mRNA_H-paniculata_contig20061.5162.1 vs. uniprot
Match: A0A6G0XML2_9STRA (KRR1 small subunit processome component n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XML2_9STRA)

HSP 1 Score: 177 bits (448), Expect = 2.530e-52
Identity = 83/106 (78.30%), Postives = 94/106 (88.68%), Query Frame = 0

Query:    1 MVRNKERFVKRRARLVGPEGSTLKALELLTGCYVLVQGNTVSAMGPFQGLKQVRKVVVDCMNNIHPVYNIKTLMIRRELAKDPNLQGENWERFLPQFHKKNVQRKK 106
            +VRNKERFVKRR RLVGP+G+TLKA+ELLT CYVLVQGNTVSAMGP+ GL+ VRK+V DC  N+HP+YNIKTLMI+RELAKDP L GENW+RFLP F KKNVQ KK
Sbjct:  137 LVRNKERFVKRRQRLVGPDGATLKAIELLTNCYVLVQGNTVSAMGPYSGLRHVRKIVEDCFQNVHPIYNIKTLMIKRELAKDPKLSGENWDRFLPTFKKKNVQTKK 242

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BLAST of mRNA_H-paniculata_contig20061.5162.1 vs. uniprot
Match: A0A8J9WIT0_9CHLO (KRR1 small subunit processome component n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WIT0_9CHLO)

HSP 1 Score: 177 bits (450), Expect = 2.750e-52
Identity = 85/112 (75.89%), Postives = 101/112 (90.18%), Query Frame = 0

Query:    1 MVRNKERFVKRRARLVGPEGSTLKALELLTGCYVLVQGNTVSAMGPFQGLKQVRKVVVDCMNNIHPVYNIKTLMIRRELAKDPNLQGENWERFLPQFHKKNVQRKKASWIEK 112
            +VRNKE+FVKRR RL+GP G+TLKALELLT CY+LVQGNTVSAMGP+QGLKQVR+VV DC+ N+HP+Y+IKTLMI+RELAKDP L+ ENWERFLP+F KKNV+RKK   I+K
Sbjct:  149 LVRNKEKFVKRRQRLLGPNGATLKALELLTNCYILVQGNTVSAMGPYQGLKQVRRVVEDCIKNVHPIYHIKTLMIKRELAKDPALKEENWERFLPKFKKKNVKRKKPVIIKK 260

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BLAST of mRNA_H-paniculata_contig20061.5162.1 vs. uniprot
Match: I0Z864_COCSC (KRR1 small subunit processome component n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z864_COCSC)

HSP 1 Score: 177 bits (449), Expect = 3.970e-52
Identity = 84/106 (79.25%), Postives = 98/106 (92.45%), Query Frame = 0

Query:    1 MVRNKERFVKRRARLVGPEGSTLKALELLTGCYVLVQGNTVSAMGPFQGLKQVRKVVVDCMNNIHPVYNIKTLMIRRELAKDPNLQGENWERFLPQFHKKNVQRKK 106
            +VRNKE+FVKRR RL+GP G+TLKALELLT CY+LVQGNTVSAMGPFQGLKQVR+VV DC+ N+HP+Y+IKTLMI+RELAKDP L+ ENWERFLP+F KKNV+RKK
Sbjct:  150 LVRNKEKFVKRRQRLLGPNGATLKALELLTNCYILVQGNTVSAMGPFQGLKQVRRVVEDCIKNVHPIYHIKTLMIKRELAKDPALKEENWERFLPKFKKKNVKRKK 255

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BLAST of mRNA_H-paniculata_contig20061.5162.1 vs. uniprot
Match: A0A8J4AU44_9CHLO (KRR-R motif-containing protein 1 n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4AU44_9CHLO)

HSP 1 Score: 177 bits (450), Expect = 5.440e-52
Identity = 83/107 (77.57%), Postives = 98/107 (91.59%), Query Frame = 0

Query:    1 MVRNKERFVKRRARLVGPEGSTLKALELLTGCYVLVQGNTVSAMGPFQGLKQVRKVVVDCMNNIHPVYNIKTLMIRRELAKDPNLQGENWERFLPQFHKKNVQRKKA 107
            ++RNKE+FVKRR RL+GP GSTLKALELLTGCYVLVQGNTV+AMGP++GLKQ+RKVV DC+ N+HP+Y+IKTLMI+RELAKDP L  ENWERFLP+F KKNV+RKK 
Sbjct:  150 IIRNKEKFVKRRQRLIGPNGSTLKALELLTGCYVLVQGNTVAAMGPYKGLKQIRKVVEDCIKNVHPIYHIKTLMIKRELAKDPALAEENWERFLPKFKKKNVKRKKT 256

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig20061.5162.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig20061.5162.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FR23_ECTSI	1.200e-61	90.00	KRR-R motif-containing protein 1 n=1 Tax=Ectocarpu...	[more]
A0A7R9YG52_9STRA	2.880e-54	79.09	KRR1 small subunit processome component n=1 Tax=Pi...	[more]
A0A836CN64_9STRA	5.690e-54	77.19	KRR1 small subunit processome component n=1 Tax=Tr...	[more]
A0A7S1UII9_9STRA	8.420e-54	76.36	KRR1 small subunit processome component n=1 Tax=Ph...	[more]
A0A1V9ZKL3_9STRA	2.890e-53	74.56	KRR1 small subunit processome component n=3 Tax=Sa...	[more]
A0A1V9ZXJ5_9STRA	1.180e-52	79.25	KRR1 small subunit processome component n=1 Tax=Th...	[more]
A0A6G0XML2_9STRA	2.530e-52	78.30	KRR1 small subunit processome component n=1 Tax=Ap...	[more]
A0A8J9WIT0_9CHLO	2.750e-52	75.89	KRR1 small subunit processome component n=1 Tax=Co...	[more]
I0Z864_COCSC	3.970e-52	79.25	KRR1 small subunit processome component n=1 Tax=Co...	[more]
A0A8J4AU44_9CHLO	5.440e-52	77.57	KRR-R motif-containing protein 1 n=1 Tax=Volvox af...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004087	K Homology domain	SMART	SM00322	kh_6	coord: 2..62 e-value: 0.0011 score: 28.2
IPR036612	K Homology domain, type 1 superfamily	GENE3D	3.30.1370.10		coord: 1..92 e-value: 6.4E-45 score: 153.2
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 7..95
IPR024166	Ribosomal RNA assembly KRR1	PANTHER	PTHR12581	HIV-1 REV BINDING PROTEIN 2, 3	coord: 1..108

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig20061	contig	H-paniculata_contig20061:232..1419 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig20061.5162.1	mRNA_H-paniculata_contig20061.5162.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig20061 220..1419 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig20061.5162.1 ID=prot_H-paniculata_contig20061.5162.1|Name=mRNA_H-paniculata_contig20061.5162.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
MVRNKERFVKRRARLVGPEGSTLKALELLTGCYVLVQGNTVSAMGPFQGL
KQVRKVVVDCMNNIHPVYNIKTLMIRRELAKDPNLQGENWERFLPQFHKK
NVQRKKASWIEKDR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR004087	KH_dom
IPR036612	KH_dom_type_1_sf
IPR024166	rRNA_assembly_KRR1