mRNA_H-paniculata_contig20061.5162.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig20061.5162.1 vs. uniprot
Match: D7FR23_ECTSI (KRR-R motif-containing protein 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR23_ECTSI) HSP 1 Score: 209 bits (533), Expect = 1.400e-64 Identity = 102/114 (89.47%), Postives = 109/114 (95.61%), Query Frame = 1
Query: 1 QIGGMVRNKERFVKRRARLVGPEGSTLKALELLTGCYVLVQGNTVSAMGPFQGLKQVRKVVVDCMNNIHPVYNIKTLMIRRELAKDPNLQGENWERFLPQFHKKNVQRKKASWI 342
+IGGMVRNKERFVKRRARLVGP+GSTLKALELLTGCYVLVQGNTVSAMG +QGLKQVRKVV DCMNN+HPVYNIKTLMIRRELAKDPNL+ ENWERFLPQFHKKNV+RKK + I
Sbjct: 124 KIGGMVRNKERFVKRRARLVGPDGSTLKALELLTGCYVLVQGNTVSAMGSYQGLKQVRKVVTDCMNNVHPVYNIKTLMIRRELAKDPNLKDENWERFLPQFHKKNVKRKKPAVI 237
BLAST of mRNA_H-paniculata_contig20061.5162.1 vs. uniprot
Match: A0A7R9YG52_9STRA (KRR1 small subunit processome component n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YG52_9STRA) HSP 1 Score: 189 bits (480), Expect = 3.330e-57 Identity = 90/114 (78.95%), Postives = 104/114 (91.23%), Query Frame = 1
Query: 1 QIGGMVRNKERFVKRRARLVGPEGSTLKALELLTGCYVLVQGNTVSAMGPFQGLKQVRKVVVDCMNNIHPVYNIKTLMIRRELAKDPNLQGENWERFLPQFHKKNVQRKKASWI 342
+IGG+VRNKERFVKRR RL+GP+GSTLKALELLTGCYVLVQGNTVSAMGP++GLKQVRKVV+DCM NIHP+YNIKTLMI+RELAKDP L + W+RFLP+F K+NV+RKK I
Sbjct: 134 KIGGLVRNKERFVKRRQRLLGPDGSTLKALELLTGCYVLVQGNTVSAMGPYKGLKQVRKVVMDCMQNIHPIYNIKTLMIKRELAKDPTLADQPWDRFLPKFKKRNVKRKKPKTI 247
BLAST of mRNA_H-paniculata_contig20061.5162.1 vs. uniprot
Match: A0A836CN64_9STRA (KRR1 small subunit processome component n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN64_9STRA) HSP 1 Score: 189 bits (480), Expect = 6.700e-57 Identity = 91/118 (77.12%), Postives = 103/118 (87.29%), Query Frame = 1
Query: 1 QIGGMVRNKERFVKRRARLVGPEGSTLKALELLTGCYVLVQGNTVSAMGPFQGLKQVRKVVVDCMNNIHPVYNIKTLMIRRELAKDPNLQGENWERFLPQFHKKNVQRKKASWIEKDR 354
+IGGMVRNKERFVKRR RLVGP+G+TLKALELLTGCY+LVQGNTV+ MG + GLKQ RKV+VDCMNNIHPVYNIKTLMIRRELAKDP L GE+W RFLP F+K+NV RKK + + R
Sbjct: 142 KIGGMVRNKERFVKRRQRLVGPDGATLKALELLTGCYILVQGNTVACMGSYAGLKQARKVIVDCMNNIHPVYNIKTLMIRRELAKDPALAGEDWSRFLPSFNKRNVPRKKPRSVREKR 259
BLAST of mRNA_H-paniculata_contig20061.5162.1 vs. uniprot
Match: A0A7S1UII9_9STRA (KRR1 small subunit processome component n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UII9_9STRA) HSP 1 Score: 187 bits (476), Expect = 9.690e-57 Identity = 87/114 (76.32%), Postives = 104/114 (91.23%), Query Frame = 1
Query: 1 QIGGMVRNKERFVKRRARLVGPEGSTLKALELLTGCYVLVQGNTVSAMGPFQGLKQVRKVVVDCMNNIHPVYNIKTLMIRRELAKDPNLQGENWERFLPQFHKKNVQRKKASWI 342
+IGG+VRNK+RFVKRR RLVGP+GSTLKALELLTGCYVLVQGNTVSAMGP +G+KQVRKVV+DCM NIHP+YNIKTLMI+RELAKDP L ++W+RFLP+F K+NV+R+K +
Sbjct: 139 KIGGLVRNKDRFVKRRQRLVGPDGSTLKALELLTGCYVLVQGNTVSAMGPHKGIKQVRKVVIDCMENIHPIYNIKTLMIKRELAKDPTLANQSWDRFLPRFQKRNVKRRKPQKV 252
BLAST of mRNA_H-paniculata_contig20061.5162.1 vs. uniprot
Match: A0A1V9ZKL3_9STRA (KRR1 small subunit processome component n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZKL3_9STRA) HSP 1 Score: 187 bits (475), Expect = 3.410e-56 Identity = 88/118 (74.58%), Postives = 103/118 (87.29%), Query Frame = 1
Query: 1 QIGGMVRNKERFVKRRARLVGPEGSTLKALELLTGCYVLVQGNTVSAMGPFQGLKQVRKVVVDCMNNIHPVYNIKTLMIRRELAKDPNLQGENWERFLPQFHKKNVQRKKASWIEKDR 354
+IGG+VRNKERFVKRR RLVGP+G+TLKA+ELLT CYVLVQGNTVSAMGP+ GL+ VRK+V DC +N+HP+YNIKTLMI+RELAKDP LQGENWERFLP F KKN+Q KK + + R
Sbjct: 129 KIGGLVRNKERFVKRRQRLVGPDGATLKAIELLTNCYVLVQGNTVSAMGPYSGLRHVRKIVEDCFHNVHPIYNIKTLMIKRELAKDPALQGENWERFLPVFKKKNIQTKKPHVVREKR 246
BLAST of mRNA_H-paniculata_contig20061.5162.1 vs. uniprot
Match: A0A1V9ZXJ5_9STRA (KRR1 small subunit processome component n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZXJ5_9STRA) HSP 1 Score: 186 bits (471), Expect = 1.390e-55 Identity = 87/110 (79.09%), Postives = 100/110 (90.91%), Query Frame = 1
Query: 1 QIGGMVRNKERFVKRRARLVGPEGSTLKALELLTGCYVLVQGNTVSAMGPFQGLKQVRKVVVDCMNNIHPVYNIKTLMIRRELAKDPNLQGENWERFLPQFHKKNVQRKK 330
+IGG+VRNKERFVKRR RLVGP+G+TLKA+ELLT CYVLVQGNTVSAMGP+ GL+ +RK+V DC +NIHP+YNIKTLMI+RELAKDP LQGENW+RFLP F KKNVQ KK
Sbjct: 135 KIGGLVRNKERFVKRRQRLVGPDGATLKAIELLTNCYVLVQGNTVSAMGPYSGLRHIRKIVEDCFHNIHPIYNIKTLMIKRELAKDPALQGENWDRFLPVFKKKNVQTKK 244
BLAST of mRNA_H-paniculata_contig20061.5162.1 vs. uniprot
Match: A0A6G0XML2_9STRA (KRR1 small subunit processome component n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XML2_9STRA) HSP 1 Score: 184 bits (468), Expect = 2.970e-55 Identity = 86/110 (78.18%), Postives = 98/110 (89.09%), Query Frame = 1
Query: 1 QIGGMVRNKERFVKRRARLVGPEGSTLKALELLTGCYVLVQGNTVSAMGPFQGLKQVRKVVVDCMNNIHPVYNIKTLMIRRELAKDPNLQGENWERFLPQFHKKNVQRKK 330
+IGG+VRNKERFVKRR RLVGP+G+TLKA+ELLT CYVLVQGNTVSAMGP+ GL+ VRK+V DC N+HP+YNIKTLMI+RELAKDP L GENW+RFLP F KKNVQ KK
Sbjct: 133 KIGGLVRNKERFVKRRQRLVGPDGATLKAIELLTNCYVLVQGNTVSAMGPYSGLRHVRKIVEDCFQNVHPIYNIKTLMIKRELAKDPKLSGENWDRFLPTFKKKNVQTKK 242
BLAST of mRNA_H-paniculata_contig20061.5162.1 vs. uniprot
Match: A0A8J9WIT0_9CHLO (KRR1 small subunit processome component n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WIT0_9CHLO) HSP 1 Score: 185 bits (470), Expect = 3.300e-55 Identity = 88/116 (75.86%), Postives = 105/116 (90.52%), Query Frame = 1
Query: 1 QIGGMVRNKERFVKRRARLVGPEGSTLKALELLTGCYVLVQGNTVSAMGPFQGLKQVRKVVVDCMNNIHPVYNIKTLMIRRELAKDPNLQGENWERFLPQFHKKNVQRKKASWIEK 348
+IGG+VRNKE+FVKRR RL+GP G+TLKALELLT CY+LVQGNTVSAMGP+QGLKQVR+VV DC+ N+HP+Y+IKTLMI+RELAKDP L+ ENWERFLP+F KKNV+RKK I+K
Sbjct: 145 KIGGLVRNKEKFVKRRQRLLGPNGATLKALELLTNCYILVQGNTVSAMGPYQGLKQVRRVVEDCIKNVHPIYHIKTLMIKRELAKDPALKEENWERFLPKFKKKNVKRKKPVIIKK 260
BLAST of mRNA_H-paniculata_contig20061.5162.1 vs. uniprot
Match: I0Z864_COCSC (KRR1 small subunit processome component n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z864_COCSC) HSP 1 Score: 185 bits (469), Expect = 4.770e-55 Identity = 87/110 (79.09%), Postives = 102/110 (92.73%), Query Frame = 1
Query: 1 QIGGMVRNKERFVKRRARLVGPEGSTLKALELLTGCYVLVQGNTVSAMGPFQGLKQVRKVVVDCMNNIHPVYNIKTLMIRRELAKDPNLQGENWERFLPQFHKKNVQRKK 330
+IGG+VRNKE+FVKRR RL+GP G+TLKALELLT CY+LVQGNTVSAMGPFQGLKQVR+VV DC+ N+HP+Y+IKTLMI+RELAKDP L+ ENWERFLP+F KKNV+RKK
Sbjct: 146 KIGGLVRNKEKFVKRRQRLLGPNGATLKALELLTNCYILVQGNTVSAMGPFQGLKQVRRVVEDCIKNVHPIYHIKTLMIKRELAKDPALKEENWERFLPKFKKKNVKRKK 255
BLAST of mRNA_H-paniculata_contig20061.5162.1 vs. uniprot
Match: A0A5J4XDV5_9CHLO (KRR1 small subunit processome component n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XDV5_9CHLO) HSP 1 Score: 183 bits (465), Expect = 1.600e-54 Identity = 86/116 (74.14%), Postives = 104/116 (89.66%), Query Frame = 1
Query: 1 QIGGMVRNKERFVKRRARLVGPEGSTLKALELLTGCYVLVQGNTVSAMGPFQGLKQVRKVVVDCMNNIHPVYNIKTLMIRRELAKDPNLQGENWERFLPQFHKKNVQRKKASWIEK 348
+IGG++RNKE+FVKRR RL+GP G+TLKALELLT CYVLVQGNTVSAMG +QG+KQVR+VV DC+ N+HP+Y+IKTLMI+RELAKDPNL ENWERFLP+F KKNV+RKK ++K
Sbjct: 142 KIGGIIRNKEKFVKRRQRLLGPNGATLKALELLTNCYVLVQGNTVSAMGSYQGIKQVRRVVEDCIKNVHPIYHIKTLMIKRELAKDPNLATENWERFLPKFQKKNVKRKKPVIVKK 257 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20061.5162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig20061.5162.1 >prot_H-paniculata_contig20061.5162.1 ID=prot_H-paniculata_contig20061.5162.1|Name=mRNA_H-paniculata_contig20061.5162.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp MVRNKERFVKRRARLVGPEGSTLKALELLTGCYVLVQGNTVSAMGPFQGLback to top mRNA from alignment at H-paniculata_contig20061:220..1419+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig20061.5162.1 ID=mRNA_H-paniculata_contig20061.5162.1|Name=mRNA_H-paniculata_contig20061.5162.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1200bp|location=Sequence derived from alignment at H-paniculata_contig20061:220..1419+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig20061:220..1419+ >mRNA_H-paniculata_contig20061.5162.1 ID=mRNA_H-paniculata_contig20061.5162.1|Name=mRNA_H-paniculata_contig20061.5162.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig20061:220..1419+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |