mRNA_H-paniculata_contig20055.5157.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20055.5157.1
Unique NamemRNA_H-paniculata_contig20055.5157.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20055.5157.1 vs. uniprot
Match: D7G7D1_ECTSI (Inorganic diphosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7D1_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 7.550e-34
Identity = 57/62 (91.94%), Postives = 57/62 (91.94%), Query Frame = -2 
Query:    2 IGDAFPGKCNCFIEVSRESRMKYEWDEETNMLKLDRVLHGAAFYPHDYGFIPQTLCGDGDPL 187
            IG   P  CNCFIEVSRESRMKYEWDEETNMLKLDRVLHGAAFYPHDYGFIPQTLCGDGDPL
Sbjct:  111 IGRTSPQVCNCFIEVSRESRMKYEWDEETNMLKLDRVLHGAAFYPHDYGFIPQTLCGDGDPL 172
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BLAST of mRNA_H-paniculata_contig20055.5157.1 vs. uniprot
Match: A0A7S2TK17_9EUKA (Inorganic diphosphatase n=2 Tax=Lotharella TaxID=74819 RepID=A0A7S2TK17_9EUKA)

HSP 1 Score: 105 bits (263), Expect = 3.160e-25
Identity = 61/132 (46.21%), Postives = 71/132 (53.79%), Query Frame = -2 
Query:    2 RALPISRALTGLARKPAPSVNNQGKGGLLMVLGGAXXXAGAVVASVGPENTRHAIGDAFPGK----------------CNCFIEVSRESRMKYEWDEETNMLKLDRVLHGAAFYPHDYGFIPQTLCGDGDPL 349
            RAL   R +TG   K + +         +M++GG    AGA++A+    N   A G   PG                   CFIEVSR SR KYEWD E   LKLDRVLH A FYPH+YGF PQTLCGDGDPL
Sbjct:   10 RALEKGRKMTGTGEKMSRTSKR------MMIVGGI---AGALMAAAATVNEASAGGGGKPGSQLSVYDVPLGKKMPNVVPCFIEVSRGSRNKYEWDNEQGFLKLDRVLHSAVFYPHNYGFFPQTLCGDGDPL 132
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BLAST of mRNA_H-paniculata_contig20055.5157.1 vs. uniprot
Match: A0A7S0GTR4_9EUKA (Inorganic diphosphatase n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0GTR4_9EUKA)

HSP 1 Score: 103 bits (257), Expect = 5.590e-24
Identity = 57/115 (49.57%), Postives = 71/115 (61.74%), Query Frame = -2 
Query:    2 ARKPAPSVNNQGKGGLLMVLGGAXXXAGAVVASVGPEN----TRHAI-------GDAFPGKCNCFIEVSRESRMKYEWDEETNMLKLDRVLHGAAFYPHDYGFIPQTLCGDGDPL 313
            AR+ + ++ ++GK   +M++GG    AGA+VA+    +    T  A+       G   P    CFIEVSR SR KYEWD     LKLDRVLH A FYPH+YGF PQTLCGDGDPL
Sbjct:   65 ARRTSSAIGSKGK--KIMLVGGV---AGAMVATAAVASADVGTPMAVSVYDVPLGRKMPDVVPCFIEVSRGSRNKYEWDNNMGFLKLDRVLHSAVFYPHNYGFFPQTLCGDGDPL 174
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BLAST of mRNA_H-paniculata_contig20055.5157.1 vs. uniprot
Match: W7TSC5_9STRA (Inorganic diphosphatase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSC5_9STRA)

HSP 1 Score: 102 bits (254), Expect = 9.430e-24
Identity = 44/61 (72.13%), Postives = 48/61 (78.69%), Query Frame = -2 
Query:    2 GDAFPGKCNCFIEVSRESRMKYEWDEETNMLKLDRVLHGAAFYPHDYGFIPQTLCGDGDPL 184
            G AFPG+   FIEVS+ SRMKYEWD    +L+LDRVLH A FYP DYGFIPQTLC DGDPL
Sbjct:  126 GKAFPGEVPVFIEVSKGSRMKYEWDSNVGLLRLDRVLHSAVFYPFDYGFIPQTLCDDGDPL 186
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BLAST of mRNA_H-paniculata_contig20055.5157.1 vs. uniprot
Match: I2CQZ4_NANGC (Inorganic diphosphatase (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQZ4_NANGC)

HSP 1 Score: 102 bits (254), Expect = 2.170e-23
Identity = 44/61 (72.13%), Postives = 48/61 (78.69%), Query Frame = -2 
Query:    2 GDAFPGKCNCFIEVSRESRMKYEWDEETNMLKLDRVLHGAAFYPHDYGFIPQTLCGDGDPL 184
            G AFPG+   FIEVS+ SRMKYEWD    +L+LDRVLH A FYP DYGFIPQTLC DGDPL
Sbjct:  132 GKAFPGEVPVFIEVSKGSRMKYEWDSNVGLLRLDRVLHSAVFYPFDYGFIPQTLCDDGDPL 192
[Close]
BLAST of mRNA_H-paniculata_contig20055.5157.1 vs. uniprot
Match: A0A7S2TVC7_9EUKA (Inorganic diphosphatase n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TVC7_9EUKA)

HSP 1 Score: 96.3 bits (238), Expect = 3.650e-21
Identity = 41/62 (66.13%), Postives = 46/62 (74.19%), Query Frame = -2 
Query:    2 IGDAFPGKCNCFIEVSRESRMKYEWDEETNMLKLDRVLHGAAFYPHDYGFIPQTLCGDGDPL 187
            IG   P     F+EVSR SR KYEWDE+   + LDRVLH A FYPH+YGF+PQTLCGDGDPL
Sbjct:  115 IGKNMPEVVQAFVEVSRGSRNKYEWDEKLGHIVLDRVLHSAVFYPHNYGFVPQTLCGDGDPL 176
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BLAST of mRNA_H-paniculata_contig20055.5157.1 vs. uniprot
Match: A0A6U3CZ65_9EUKA (Inorganic diphosphatase n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A6U3CZ65_9EUKA)

HSP 1 Score: 95.5 bits (236), Expect = 7.020e-21
Identity = 41/62 (66.13%), Postives = 46/62 (74.19%), Query Frame = -2 
Query:    2 IGDAFPGKCNCFIEVSRESRMKYEWDEETNMLKLDRVLHGAAFYPHDYGFIPQTLCGDGDPL 187
            IG   P     F+EVS+ SR KYEWDE+   + LDRVLH A FYPH+YGFIPQTLCGDGDPL
Sbjct:  114 IGKDMPEVVQAFVEVSKGSRNKYEWDEKLGHIVLDRVLHSAVFYPHNYGFIPQTLCGDGDPL 175
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BLAST of mRNA_H-paniculata_contig20055.5157.1 vs. uniprot
Match: A0A2E2UTV0_9FLAO (Inorganic pyrophosphatase n=2 Tax=root TaxID=1 RepID=A0A2E2UTV0_9FLAO)

HSP 1 Score: 89.7 bits (221), Expect = 1.170e-19
Identity = 36/62 (58.06%), Postives = 46/62 (74.19%), Query Frame = -2 
Query:    2 IGDAFPGKCNCFIEVSRESRMKYEWDEETNMLKLDRVLHGAAFYPHDYGFIPQTLCGDGDPL 187
            + + FP K   +IEVS+ SR KYEWD++ N L LDR+LH +  YP++YGF PQTLC DGDPL
Sbjct:   12 VDENFPYKIPAYIEVSKNSRFKYEWDDKLNTLVLDRILHSSVVYPYNYGFFPQTLCDDGDPL 73
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BLAST of mRNA_H-paniculata_contig20055.5157.1 vs. uniprot
Match: A0A6C0EH07_9ZZZZ (Inorganic diphosphatase n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0EH07_9ZZZZ)

HSP 1 Score: 88.2 bits (217), Expect = 4.970e-19
Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = -2 
Query:    2 DAFPGKCNCFIEVSRESRMKYEWDEETNMLKLDRVLHGAAFYPHDYGFIPQTLCGDGDPL 181
            + FP +   +IEV + +R KYE+DE+   L LDR+LH A FYPH+YGFIPQTLCGDGD L
Sbjct:   10 EKFPNELLAYIEVQKNTRTKYEYDEKMQTLVLDRILHSAVFYPHNYGFIPQTLCGDGDAL 69
[Close]
BLAST of mRNA_H-paniculata_contig20055.5157.1 vs. uniprot
Match: A0A1D6GR01_MAIZE (Inorganic diphosphatase n=2 Tax=Panicoideae TaxID=147369 RepID=A0A1D6GR01_MAIZE)

HSP 1 Score: 85.9 bits (211), Expect = 1.200e-18
Identity = 33/62 (53.23%), Postives = 48/62 (77.42%), Query Frame = -2 
Query:    2 IGDAFPGKCNCFIEVSRESRMKYEWDEETNMLKLDRVLHGAAFYPHDYGFIPQTLCGDGDPL 187
            IG   P   NC +E+++ S++KYE D++T M+K+DRVL+ +  YPH+YGFIP+TLC DGDP+
Sbjct:   33 IGPGAPAVFNCVVEITKGSKVKYELDKKTGMIKVDRVLYSSVVYPHNYGFIPRTLCEDGDPM 94
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20055.5157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7D1_ECTSI7.550e-3491.94Inorganic diphosphatase n=1 Tax=Ectocarpus silicul... [more]
A0A7S2TK17_9EUKA3.160e-2546.21Inorganic diphosphatase n=2 Tax=Lotharella TaxID=7... [more]
A0A7S0GTR4_9EUKA5.590e-2449.57Inorganic diphosphatase n=1 Tax=Amorphochlora amoe... [more]
W7TSC5_9STRA9.430e-2472.13Inorganic diphosphatase n=1 Tax=Nannochloropsis ga... [more]
I2CQZ4_NANGC2.170e-2372.13Inorganic diphosphatase (Fragment) n=1 Tax=Nannoch... [more]
A0A7S2TVC7_9EUKA3.650e-2166.13Inorganic diphosphatase n=1 Tax=Lotharella oceanic... [more]
A0A6U3CZ65_9EUKA7.020e-2166.13Inorganic diphosphatase n=1 Tax=Lotharella globosa... [more]
A0A2E2UTV0_9FLAO1.170e-1958.06Inorganic pyrophosphatase n=2 Tax=root TaxID=1 Rep... [more]
A0A6C0EH07_9ZZZZ4.970e-1960.00Inorganic diphosphatase n=1 Tax=viral metagenome T... [more]
A0A1D6GR01_MAIZE1.200e-1853.23Inorganic diphosphatase n=2 Tax=Panicoideae TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20055contigH-paniculata_contig20055:1389..3920 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size459
Cds size363
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20055.5157.1prot_H-paniculata_contig20055.5157.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20055 1389..3825 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929513.7453165-CDS-H-paniculata_contig20055:1388..14391622929513.7453165-CDS-H-paniculata_contig20055:1388..1439Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20055 1389..1439 -
1691480893.783554-CDS-H-paniculata_contig20055:1388..14391691480893.783554-CDS-H-paniculata_contig20055:1388..1439Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20055 1389..1439 -
1622929513.7677763-CDS-H-paniculata_contig20055:2770..29881622929513.7677763-CDS-H-paniculata_contig20055:2770..2988Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20055 2771..2988 -
1691480893.7944024-CDS-H-paniculata_contig20055:2770..29881691480893.7944024-CDS-H-paniculata_contig20055:2770..2988Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20055 2771..2988 -
1622929513.783375-CDS-H-paniculata_contig20055:3015..30391622929513.783375-CDS-H-paniculata_contig20055:3015..3039Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20055 3016..3039 -
1691480893.8025331-CDS-H-paniculata_contig20055:3015..30391691480893.8025331-CDS-H-paniculata_contig20055:3015..3039Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20055 3016..3039 -
1622929513.801264-CDS-H-paniculata_contig20055:3755..38251622929513.801264-CDS-H-paniculata_contig20055:3755..3825Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20055 3756..3825 -
1691480893.8106668-CDS-H-paniculata_contig20055:3755..38251691480893.8106668-CDS-H-paniculata_contig20055:3755..3825Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20055 3756..3825 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929513.8131855-UTR-H-paniculata_contig20055:3825..39201622929513.8131855-UTR-H-paniculata_contig20055:3825..3920Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20055 3826..3920 -
1691480893.8259418-UTR-H-paniculata_contig20055:3825..39201691480893.8259418-UTR-H-paniculata_contig20055:3825..3920Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20055 3826..3920 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20055.5157.1

>prot_H-paniculata_contig20055.5157.1 ID=prot_H-paniculata_contig20055.5157.1|Name=mRNA_H-paniculata_contig20055.5157.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=121bp
MLVSSSHSYFILDSLDTSMKQLHLPGNASPIACRVFSGPTEATTAPAAAA
APPRTMSNPPFPWLLTLGAGFLAKPVNAREIGKARRAWKREVARVAIRAF
MAAVRMKSIEQETCIFQSEHG
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mRNA from alignment at H-paniculata_contig20055:1389..3920-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20055.5157.1 ID=mRNA_H-paniculata_contig20055.5157.1|Name=mRNA_H-paniculata_contig20055.5157.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2532bp|location=Sequence derived from alignment at H-paniculata_contig20055:1389..3920- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAGTGGATCGCCATCTCCGCACAGAGTCTGTGGGATGAAACCGTAATCG
TGGGGGTAAAACGCAGCGCCGTGCAGCACTCTGTCCAGCTTGAGCATGTT
GGTCTCCTCGTCCCACTCATACTTCATTCTTGACTCCCTGGACACCTCGA
TGAAGCAGTTACACTGCATCGGTGTTTCGCCGTCAAGGTATGTGAAAAAA
TTGCAAAACGCTGAGTTAGGAGCGGCGTGTGTTATTTCAGGAGTATTACG
GTTCACGTTTGTTTGTACTATCATAGCTGGTGTATCTAAGGAATCGAGTC
CTCATGGTCTGATTCGCTACGTTTAATGCCAGCAAGATTTGCCGCTCCAG
TGTCGACCGCAGCACAACCCAGACAGGAGAAAGGCAAGATAAGGCGATGA
TATCCTAACCCCAAAATTACTAGACGGTGCACAACGCGCTTGCAGGGAAC
CGGTCGAATGTTGAAAGAAGACAAAAACCAATGATAAATAGAATTTTCCT
TATTCAAGCAACAGACCTACAGTACCAGGATTGGGCGGTGCTAAATGACA
TGAATGCTGAAGACCGTCAAGTATATACAGAACAAGAGCATGAAGAATAC
AGCTTCATCTCAAAACTTGCGTGAATAATTAGGTACACATTTTGACATAT
GGTTAGATACTCACACAAGGAAGCTAGCCATTCAAATCTATCAAGCTAAA
GTACCATTGACTCTCTGACGAGTGCCCCTGTGTAAAAACGACCAACGGCG
AATACGGACCCTACATGGACCATGACCAAGTCGTGCGTCAGGCTACAAAG
ATCGGTACCGTCCTTATCATAGAACCCCATTCATGCGGTCAACTGCGACA
AAAAGTGAAAAGCAATCCACCATACTCACAGTACCAGGGAACGCATCACC
GATAGGCAAGGAGTAAGCTCCCACGGCCAAAGCATGTCGTGTATTTTCTG
GCCCAACAGAGGCAACCACCGCGCCAGCAGCTGCCGCAGCTCCTCCGAGA
ACCATGAGCAACCCACCCTTCCCTTGGTTGTTAACACTAGGGGCCGGTTT
CCTGGCCAAGCCGGTTAATGCTCGCGAAATCGGCAAGGCGCGCCGAGCGT
GGAAACGTGAGGTTGCTCGAGTGGCCATCCGGGCGTTCATGGCTGCTGTA
GTTATTCGATACCACACGCAATGTTTAGACAAGAGTCATCTGGAAGTACA
GCAGGTTAAATTACGCCATGGAACAACGGTACCTTGTATCTTGGATGAAC
GCGCGAATATTCTGCGGGACATGGGCAGACTTGCGACACTGCGAGTGCTG
CGTAGAGGGGCCAGGGAAACGACTTTGAAAAAACACACACACGGCGAGGT
ACGGCTCATAGTGTACACAACCGGGTAATTTTGGTATAAAGAACCGTTAC
CTTCCATGCACGTTTGCCTCCACCCACGAACTCGTACGGAGCTACTATTT
AGTGCAACAACCGGCTAACTCAGGTTAATCTCGACGTTCTACACTGCACT
ACTGGGTATCCCAATGTTACTACACGTACGTACGATGCATGTTGATAAAA
CGTCACCGGCAACAGGGGACATGAACCAGAACAACCATGTACCCTGATTC
ACATGTGCACATGTAGTGCTCCCTGCTTTCGAACATGTGCAGATGGCGAT
CCTGCAGAGTAAAGTACTACGTGAATACACTCACTCACTGTAAATGGCCG
ATTCATGTACTCGGTTTCGCCCTCGTAGCGAACTTTTGTACTACTATCCA
ACACCAAAGCCTTGACTCTGACGTGCAATAGCTCGACGTAACATGCCAGA
GGACACTAGGAATCCCAACAGCACAAGGAAATGCAAACAAGGTGTGGGCA
ACACCCGAACCCCGAGATACTCGAGGCAACTACTGTCATGTGGTTGAACC
CTAAATATTGTTTTGAATTGTCCCCAGGAAGTACATCAGATGACCTGATA
ACCAGATGCCAAGGCTTGGATACTGTAAAACCAAGCAGTTGAACAGCAGT
GTCATATCTACTGCCTGAACCTTATTAGTCTGCGTATGGTGAGAGACTCA
ACAAAATAAGGGGTGCCAATTGAGTGTTGGACGATTGTATGGACCTGCAG
ACTTTCGTACAGGCATATCACAGTTCTAGTGTGCCCAAGTGGATATTTGT
CGAGTTTTCGATTGGCACTCACGAGATACTCTGCACGATGCCTTCCACAC
CAGTGAGGCTTAGAAATTACTGAACCATCAGCCCAGTAAGTCTCACAAAT
ATGAAGATACACTCAAACACGCGGCAAAATACGTAGTACATGACTAGCTG
TGTACGTGAGATGAAGCAATTTCTCCGCACTGATCAATCCCAAGGTCAGA
AGCAACAGAACTGCGTTGGTGCCCTGGTCAAGGTGAAAACACCTTCTCTA
CAACGTAGTACAATTTGCAGCGCCTCTCCATGTACAAAAGGATCTCCAAC
CGACTCGAGCTAAGGGGGACCTACCTCACAGAGGATGAAAAGTATAGAGC
AGGAAACGTGTATATTCCAGAGCGAGCACGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig20055:1389..3920-

>mRNA_H-paniculata_contig20055.5157.1 ID=mRNA_H-paniculata_contig20055.5157.1|Name=mRNA_H-paniculata_contig20055.5157.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at H-paniculata_contig20055:1389..3920- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGGTCTCCTCGTCCCACTCATACTTCATTCTTGACTCCCTGGACAC
CTCGATGAAGCAGTTACACTATGTTGGTCTCCTCGTCCCACTCATACTTC
ATTCTTGACTCCCTGGACACCTCGATGAAGCAGTTACACTTACCAGGGAA
CGCATCACCGATAGTACCAGGGAACGCATCACCGATAGCATGTCGTGTAT
TTTCTGGCCCAACAGAGGCAACCACCGCGCCAGCAGCTGCCGCAGCTCCT
CCGAGAACCATGAGCAACCCACCCTTCCCTTGGTTGTTAACACTAGGGGC
CGGTTTCCTGGCCAAGCCGGTTAATGCTCGCGAAATCGGCAAGGCGCGCC
GAGCGTGGAAACGTGAGGTTGCTCGAGTGGCCATCCGGGCGTTCATGGCT
GCTGTACATGTCGTGTATTTTCTGGCCCAACAGAGGCAACCACCGCGCCA
GCAGCTGCCGCAGCTCCTCCGAGAACCATGAGCAACCCACCCTTCCCTTG
GTTGTTAACACTAGGGGCCGGTTTCCTGGCCAAGCCGGTTAATGCTCGCG
AAATCGGCAAGGCGCGCCGAGCGTGGAAACGTGAGGTTGCTCGAGTGGCC
ATCCGGGCGTTCATGGCTGCTGTAAGGATGAAAAGTATAGAGCAGGAAAC
GTGTATATTCCAGAGCGAGCACGGAAGGATGAAAAGTATAGAGCAGGAAA
CGTGTATATTCCAGAGCGAGCACGGA
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