mRNA_H-paniculata_contig2004.5152.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2004.5152.1 vs. uniprot
Match: D7FKV0_ECTSI (Ferredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKV0_ECTSI) HSP 1 Score: 193 bits (490), Expect = 3.960e-56 Identity = 105/176 (59.66%), Postives = 127/176 (72.16%), Query Frame = 3
Query: 87 LVVITISLSFIIQSSSGFLFSFPANTLSNAATGTNRKTSTPPELRAYDMLVTMPDGGEQRIVSANEGQSILEALEMDGIEAPHSCRSGLCTECAAMVTANLDKVKLEAAVLEPEVSARGFVLTCSSTIAGSGVELELGAGDKMYEAQYGGFRKDHEEAQTSKPGKWSIPFPDISGA 614
+V I I ++ +SGF+F PA +T + S+ P A D+ VT+ G R V+ EG SIL+ LE I+APHSCRSGLCTECAAMVTANLD VKLEAAVL+PE+SARGFVLTCSST+AG GVELELG GDKMYEAQYG + H +AQ +KPGKW++PFPD+SGA
Sbjct: 3 VVRIAIGGLCMLDLTSGFVFPAPA-----VSTCRRARMSSSPLRAANDVKVTVE--GVVRTVALEEGVSILDGLEAHDIDAPHSCRSGLCTECAAMVTANLDNVKLEAAVLDPEISARGFVLTCSSTVAGPGVELELGVGDKMYEAQYGELVQGHNDAQEAKPGKWNLPFPDVSGA 171
BLAST of mRNA_H-paniculata_contig2004.5152.1 vs. uniprot
Match: A0A7S1NQA7_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NQA7_9EUGL) HSP 1 Score: 112 bits (281), Expect = 1.540e-26 Identity = 48/96 (50.00%), Postives = 72/96 (75.00%), Query Frame = 3
Query: 282 EGQSILEALEMDGIEAPHSCRSGLCTECAAMVTANLDKVKLEAAVLEPEVSARGFVLTCSSTIAGSGVELELGAGDKMYEAQYGGFRKDHEEAQTS 569
+ +++L+A+E GI+APHSCR+GLCTECA VT+ LD + L+A V + G+VLTC++ + G GVE+ LG GD+MY++Q+G FRK HE+ Q++
Sbjct: 8 KSETLLDAMEAAGIDAPHSCRTGLCTECAGRVTSGLDSIDLQACVTQDSTFNEGYVLTCAANVTGPGVEITLGMGDEMYDSQFGDFRKGHEDMQSA 103
BLAST of mRNA_H-paniculata_contig2004.5152.1 vs. uniprot
Match: A0A7S2XX00_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX00_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 8.060e-16 Identity = 43/111 (38.74%), Postives = 67/111 (60.36%), Query Frame = 3
Query: 225 YDMLVTMPDGGEQRIVSANEGQSILEALEMDGIEAPHSCRSGLCTECAAMVTANLDKVKLEAAVLEPEVSARGFVLTCSSTIAGSGVELELGAGDKMYEAQYGGFRKDHEE 557
+D+ +T GE ++++ E Q+ILEA E + P SCR+G+CT CAAMVT + + L L E +G+ L C S G G+++ELG D++YE QYG + ++ +E
Sbjct: 23 WDVSITF--NGETKVITVPEDQNILEASEELFGDVPCSCRNGICTTCAAMVTGGEESLTLAVHGLSAEQREKGYTLCCQSYATGPGLKVELGKYDEVYEDQYGKYERNQQE 131
BLAST of mRNA_H-paniculata_contig2004.5152.1 vs. uniprot
Match: A0A4Y3G2Y9_9CYAN (Ferredoxin n=1 Tax=cyanobiont of Ornithocercus magnificus TaxID=2496102 RepID=A0A4Y3G2Y9_9CYAN) HSP 1 Score: 62.4 bits (150), Expect = 2.020e-8 Identity = 38/99 (38.38%), Postives = 59/99 (59.60%), Query Frame = 3
Query: 255 GEQRIVSANEGQSILEALEMDGIEAPHSCRSGLCTECAAMVTANLDKVKLEAAVLEPEVSARGFVLTCSSTIAGSGVELELGAG--DKMYEAQYGGFRK 545
GE+ Q+I +A E G+ P SCRSG+CT CAA+V+ + + + +A ++PE+ +GF L C +A +L L AG D +YEAQ+G ++K
Sbjct: 17 GEKSSFQCRSDQTIQQAAENAGVMLPSSCRSGVCTTCAALVSDGIVE-QPDAMGVKPELQEQGFTLLC---VAYPRSDLSLCAGQEDILYEAQFGQYQK 111
BLAST of mRNA_H-paniculata_contig2004.5152.1 vs. uniprot
Match: A0A519S6Q1_9BACT (Phenylacetate-CoA oxygenase/reductase subunit PaaK n=2 Tax=Hymenobacter TaxID=89966 RepID=A0A519S6Q1_9BACT) HSP 1 Score: 61.6 bits (148), Expect = 1.120e-6 Identity = 33/78 (42.31%), Postives = 52/78 (66.67%), Query Frame = 3
Query: 234 LVTMP-DGGEQRIVSANEGQSILEALEMDGIEAPHSCRSGLCTECAAMVTANLDKVKLEAAVLEPEVSARGFVLTCSS 464
LVT+ DGG + + + G +IL+A GI+AP+SC++G+C+ C A VTA ++ + ++ E EV ARG+VLTC +
Sbjct: 270 LVTLKLDGGARLLEMSYYGNTILDAALESGIDAPYSCKNGMCSTCMARVTAGRVEMDVNYSLSEAEV-ARGYVLTCQA 346
BLAST of mRNA_H-paniculata_contig2004.5152.1 vs. uniprot
Match: A0A4Q5RCF9_9BACT (Phenylacetate-CoA oxygenase/reductase subunit PaaK n=1 Tax=Cytophagaceae bacterium TaxID=2026729 RepID=A0A4Q5RCF9_9BACT) HSP 1 Score: 61.2 bits (147), Expect = 1.490e-6 Identity = 29/72 (40.28%), Postives = 49/72 (68.06%), Query Frame = 3
Query: 249 DGGEQRIVSANEGQSILEALEMDGIEAPHSCRSGLCTECAAMVTANLDKVKLEAAVLEPEVSARGFVLTCSS 464
DGG +++ + G +IL+A GI+AP+SC++G+C+ C A VTA ++ + ++ E EV A+G+VLTC +
Sbjct: 276 DGGTRQLAMSYYGNTILDAALESGIDAPYSCKNGMCSTCLARVTAGRVEMDVNYSLSEAEV-AKGYVLTCQA 346
BLAST of mRNA_H-paniculata_contig2004.5152.1 vs. uniprot
Match: Q3AZL8_SYNS9 (Ferredoxin (2Fe-2S) n=2 Tax=unclassified Synechococcus TaxID=2626047 RepID=Q3AZL8_SYNS9) HSP 1 Score: 56.6 bits (135), Expect = 2.260e-6 Identity = 33/98 (33.67%), Postives = 56/98 (57.14%), Query Frame = 3
Query: 255 GEQRIVSANEGQSILEALEMDGIEAPHSCRSGLCTECAAMVTA-NLDKVKLEAAVLEPEVSARGFVLTCSSTIAGSGVELELGAGDKMYEAQYGGFRK 545
GE Q++L A E GI P SC +G+CT CAA+++A ++D+ +A + ++ +G+ L C S + + L+ G D +YEAQ+G ++K
Sbjct: 19 GEVHQFKCRADQTVLNAAEAAGINLPSSCCTGVCTTCAAVISAGSVDQP--DAMGVRSDLQEKGYALLCVS-FPRADLTLKTGQEDALYEAQFGQYQK 113
BLAST of mRNA_H-paniculata_contig2004.5152.1 vs. uniprot
Match: A0A519ZD81_9BACT (2Fe-2S iron-sulfur cluster binding domain-containing protein (Fragment) n=1 Tax=Hymenobacter sp. TaxID=1898978 RepID=A0A519ZD81_9BACT) HSP 1 Score: 55.8 bits (133), Expect = 6.350e-6 Identity = 29/85 (34.12%), Postives = 50/85 (58.82%), Query Frame = 3
Query: 249 DGGEQRIVSANEGQSILEALEMDGIEAPHSCRSGLCTECAAMVTANLDKVKLEAAVLEPEVSARGFVLTCSSTIAGSGVELELGA 503
DG R+ + G ++L+A GI+AP+SC++G+C+ C A VT + + ++ E EV A+G+VLTC + + V ++ A
Sbjct: 48 DGRGYRLDMSYYGDTVLDAALAAGIDAPYSCKNGMCSTCRARVTGGTAAMDVNYSLSETEV-AKGYVLTCQARPTTAEVTIDFDA 131
BLAST of mRNA_H-paniculata_contig2004.5152.1 vs. uniprot
Match: A0A1Z8QU81_9BACT (Uncharacterized protein n=1 Tax=Bacteroidetes bacterium TMED39 TaxID=1986664 RepID=A0A1Z8QU81_9BACT) HSP 1 Score: 58.9 bits (141), Expect = 8.070e-6 Identity = 29/70 (41.43%), Postives = 44/70 (62.86%), Query Frame = 3
Query: 255 GEQRIVSANEGQSILEALEMDGIEAPHSCRSGLCTECAAMVTANLDKVKLEAAVLEPEVSARGFVLTCSS 464
G++ IV+ EGQ+ILEA++ ++ P+SC +G+CT C A V A K+ + + E+ GFVLTC S
Sbjct: 273 GDESIVTVEEGQTILEAVQDADLDPPYSCTAGVCTTCRARVIAGSVKMDEREGLSDAEIE-EGFVLTCQS 341
BLAST of mRNA_H-paniculata_contig2004.5152.1 vs. uniprot
Match: UPI0018DAF629 (phenylacetate-CoA oxygenase/reductase subunit PaaK n=5 Tax=Hymenobacter TaxID=89966 RepID=UPI0018DAF629) HSP 1 Score: 58.9 bits (141), Expect = 8.280e-6 Identity = 34/100 (34.00%), Postives = 56/100 (56.00%), Query Frame = 3
Query: 171 NAATGTNRKTSTPP--ELRAYDMLVTMPDGGEQRIVSANEGQSILEALEMDGIEAPHSCRSGLCTECAAMVTANLDKVKLEAAVLEPEVSARGFVLTCSS 464
NA G K PP E + + DG + + + G +IL+AL G++AP+SC++G+C+ C A VTA ++ + ++ + EV A G+VLTC +
Sbjct: 248 NAGAGGAAKPKLPPVGEDDKHSTVTVQLDGNTRVLEMSYYGNTILDALLETGVDAPYSCKNGMCSTCRARVTAGQVEMDVNYSLSDTEV-ANGYVLTCQA 346 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2004.5152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2004.5152.1 >prot_H-paniculata_contig2004.5152.1 ID=prot_H-paniculata_contig2004.5152.1|Name=mRNA_H-paniculata_contig2004.5152.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=186bp MKAPRAVAALVVITISLSFIIQSSSGFLFSFPANTLSNAATGTNRKTSTPback to top mRNA from alignment at H-paniculata_contig2004:155..2441- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2004.5152.1 ID=mRNA_H-paniculata_contig2004.5152.1|Name=mRNA_H-paniculata_contig2004.5152.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2287bp|location=Sequence derived from alignment at H-paniculata_contig2004:155..2441- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2004:155..2441- >mRNA_H-paniculata_contig2004.5152.1 ID=mRNA_H-paniculata_contig2004.5152.1|Name=mRNA_H-paniculata_contig2004.5152.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1116bp|location=Sequence derived from alignment at H-paniculata_contig2004:155..2441- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |