mRNA_H-paniculata_contig20036.5151.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20036.5151.1
Unique NamemRNA_H-paniculata_contig20036.5151.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig20036.5151.1 vs. uniprot
Match: D8LTD6_ECTSI (Protein kinase domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTD6_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 1.520e-32
Identity = 66/110 (60.00%), Postives = 80/110 (72.73%), Query Frame = 1
Query:    4 QFIGMELCGHGDAEGLIRNQPDGLLSLSEAHCFLFQMAFALYVGRTELSMRHFDVKLLNFLVADAAALLG-----------MEDGGGVVLRYAVGAEVVELRMPEERAFV 300
            Q+IGMELC HGDAE  I+ Q DGLL   EA  FLFQMAFALY GR ELS+RHFDVKLLNF V+DA+ L+G           +E+GG V LRY VG +VVEL +P++RA++
Sbjct: 1980 QYIGMELCEHGDAEVFIKTQRDGLLPTVEAQGFLFQMAFALYAGRAELSLRHFDVKLLNFFVSDASRLVGGXXXXXXXXXDVEEGGPVTLRYGVGGDVVELCLPQDRAYL 2089          
BLAST of mRNA_H-paniculata_contig20036.5151.1 vs. uniprot
Match: F0YNB9_AURAN (Protein kinase domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YNB9_AURAN)

HSP 1 Score: 82.4 bits (202), Expect = 3.330e-16
Identity = 43/91 (47.25%), Postives = 51/91 (56.04%), Query Frame = 1
Query:    7 FIGMELCGHGDAEGLIRNQPDGLLSLSEAHCFLFQMAFALYVGRTELSMRHFDVKLLNFLVADAAALLGMEDGGGVVLRYAVGAEVVELRM 279
            +  MELCGHGD EG +R+ P G L         FQM F+LY  R  L +RH+DVKLLNFL A  AA          V RYAVG    +LR+
Sbjct: 1081 YARMELCGHGDVEGWLRSLPGGALPDGATLALFFQMCFSLYASRAALGLRHYDVKLLNFLAAPVAA--------ATVARYAVGPAAFDLRL 1163          
BLAST of mRNA_H-paniculata_contig20036.5151.1 vs. uniprot
Match: A0A4D9D2S7_9STRA (Protein kinase domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D2S7_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.390e-14
Identity = 46/116 (39.66%), Postives = 55/116 (47.41%), Query Frame = 1
Query:    1 LQFIGMELCGHGDAEGLIRNQPDGLLSLSEAHCFLFQMAFALYVGRTELSMRHFDVKLLNFLVADAAALLGMEDG----------------------GGVVLRYAVGAEVVELRMP 282
            LQ I MELC HGD E  +R +P G L        LFQM FALY  R   +MRH+D+KLLNFL+AD  A   +                         G V +RY +G  V  LR P
Sbjct: 1821 LQLIRMELCRHGDLEKFLRERPLGALPPGLTRLLLFQMCFALYAARETYAMRHYDLKLLNFLLADFLAPASVASSLPASTFPDKSRPLGCTVDNPATGAVEVRYGLGLHVYRLRFP 1936          
BLAST of mRNA_H-paniculata_contig20036.5151.1 vs. uniprot
Match: A0A835ZET0_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZET0_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 6.140e-14
Identity = 41/101 (40.59%), Postives = 58/101 (57.43%), Query Frame = 1
Query:    4 QFIGMELCGHGDAEGLIRNQPDGLLSLSEAHCFLFQMAFALYVGRTELSMRHFDVKLLNFLVADAA----ALLGMEDGGGVVLRYAVGAEVVELRMPEERA 294
            QFIGMELC  GD EG +R  P G+L + +    LFQM F+++  R E  +RH+D+KLLNFLV+  A    A +   D    V++  +   V ++RM    A
Sbjct:  147 QFIGMELCELGDVEGYLRELPRGVLPVEDTVAVLFQMLFSIFAARHEYRLRHYDLKLLNFLVSRRAKVPCAAVEQTDQTVSVVQCGIDEHVFDVRMSANHA 247          
BLAST of mRNA_H-paniculata_contig20036.5151.1 vs. uniprot
Match: K8YTN3_NANGC (Protein kinase domain-containing protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8YTN3_NANGC)

HSP 1 Score: 74.3 bits (181), Expect = 2.260e-13
Identity = 37/68 (54.41%), Postives = 43/68 (63.24%), Query Frame = 1
Query:    1 LQFIGMELCGHGDAEGLIRNQPDGLLSLSEAHCFLFQMAFALYVGRTELSMRHFDVKLLNFLVADAAA 204
            LQ I MELC HGD E  +R +P G L        LFQM FALY  R   +MRH+D+KLLNFL+AD  A
Sbjct: 1081 LQLIRMELCRHGDLEKFLRERPLGALPPGLTRLLLFQMCFALYAARETYAMRHYDLKLLNFLLADFLA 1148          
BLAST of mRNA_H-paniculata_contig20036.5151.1 vs. uniprot
Match: A0A7S1YM16_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YM16_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 3.080e-13
Identity = 38/99 (38.38%), Postives = 53/99 (53.54%), Query Frame = 1
Query:    4 QFIGMELCGHGDAEGLIRNQPDGLLSLSEAHCFLFQMAFALYVGRTELSMRHFDVKLLNFLVADAAALLGMEDGGGVVLRYAVGAEVVELRMPEERAFV 300
            Q++ MELC  GDAE  ++  PD + +   A   LFQMAF+LY      S++H+DVKLLNF +          D    VLRY +G+    L MP +   +
Sbjct:  823 QYMRMELCQEGDAEEYLKRMPDEMTTTCVARTMLFQMAFSLYTAADRYSLKHYDVKLLNFFLQKVD---DKSDKASTVLRYGLGSLNFALEMPTDTGVI 918          
BLAST of mRNA_H-paniculata_contig20036.5151.1 vs. uniprot
Match: A0A1V9YW89_9STRA (Protein kinase domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YW89_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 7.300e-10
Identity = 31/62 (50.00%), Postives = 41/62 (66.13%), Query Frame = 1
Query:    4 QFIGMELCGHGDAEGLIRNQPDGLLSLSEAHCFLFQMAFALYVGRTELSMRHFDVKLLNFLV 189
            Q+  MELC  G+ E  +R    G LS+ ++ C  FQM FALYVGR +  +RHFD+KLLNF +
Sbjct:  528 QYCTMELCDGGNLEDYLR--VHGTLSVHDSLCLFFQMVFALYVGRDQHELRHFDIKLLNFFL 587          
BLAST of mRNA_H-paniculata_contig20036.5151.1 vs. uniprot
Match: A0A1V9Y4M9_9STRA (Protein kinase domain-containing protein (Fragment) n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y4M9_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.320e-9
Identity = 31/67 (46.27%), Postives = 44/67 (65.67%), Query Frame = 1
Query:    4 QFIGMELCGHGDAEGLIRNQPDGLLSLSEAHCFLFQMAFALYVGRTELSMRHFDVKLLNFLVADAAA 204
            Q++ MELC  G+ E  +R    G L++S+   + FQM FALY GR E ++RH+D+KLLNF V   +A
Sbjct:  511 QYVRMELCDGGNVEDHLR--AGGALAVSDVVGYFFQMCFALYTGRIEHALRHYDIKLLNFFVQSHSA 575          
BLAST of mRNA_H-paniculata_contig20036.5151.1 vs. uniprot
Match: A0A8J2SVH8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SVH8_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.850e-9
Identity = 31/61 (50.82%), Postives = 37/61 (60.66%), Query Frame = 1
Query:   10 IGMELCGHGDAEGLIRNQPDGLLSLSEAHCFLFQMAFALYVGRTELSMRHFDVKLLNFLVA 192
            + M LC  GD E  +R QP  +L       F FQM FALY  R  L +RH+D+KLLNFLVA
Sbjct:  428 VRMGLCSCGDIESWLRRQPGMVLPTCTTLRFFFQMCFALYASRATLGLRHYDLKLLNFLVA 488          
BLAST of mRNA_H-paniculata_contig20036.5151.1 vs. uniprot
Match: A0A024UJT8_9STRA (Serine/threonine protein kinase n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UJT8_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 4.760e-9
Identity = 39/94 (41.49%), Postives = 50/94 (53.19%), Query Frame = 1
Query:    4 QFIGMELCGHGDAEGLIRNQPDGLLSLSEAHCFLF-QMAFALYVGRTELSMRHFDVKLLNFLVADAAALLGMEDGGGVVLRYAVGAEVVELRMP 282
            Q+I MELC  G+ E  IR   DG  +L      LF QM FALY GR +  +RH+D+KLLNF +   +A        G  + YA   +V EL  P
Sbjct:  626 QYIRMELCDGGNVEDYIR--LDGTSNLIHGWSSLFFQMVFALYAGREQHQLRHYDIKLLNFFLQSTSA-------EGTTMTYAFEEKVFELTSP 710          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20036.5151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D8LTD6_ECTSI1.520e-3260.00Protein kinase domain-containing protein (Fragment... [more]
F0YNB9_AURAN3.330e-1647.25Protein kinase domain-containing protein n=1 Tax=A... [more]
A0A4D9D2S7_9STRA1.390e-1439.66Protein kinase domain-containing protein n=1 Tax=N... [more]
A0A835ZET0_9STRA6.140e-1440.59Kinase-like domain-containing protein n=1 Tax=Trib... [more]
K8YTN3_NANGC2.260e-1354.41Protein kinase domain-containing protein n=2 Tax=N... [more]
A0A7S1YM16_9STRA3.080e-1338.38Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A1V9YW89_9STRA7.300e-1050.00Protein kinase domain-containing protein n=1 Tax=T... [more]
A0A1V9Y4M9_9STRA1.320e-946.27Protein kinase domain-containing protein (Fragment... [more]
A0A8J2SVH8_9STRA1.850e-950.82Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A024UJT8_9STRA4.760e-941.49Serine/threonine protein kinase n=2 Tax=Aphanomyce... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20036contigH-paniculata_contig20036:1576..1959 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score123.6
Seed ortholog evalue4.8e-26
Seed eggNOG ortholog2880.D8LTD6
Hectar predicted targeting categoryother localisation
EggNOG OGs28UP7@1,2R1E5@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size300
Cds size285
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20036.5151.1prot_H-paniculata_contig20036.5151.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20036 1576..1944 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929512.8656147-CDS-H-paniculata_contig20036:1575..16641622929512.8656147-CDS-H-paniculata_contig20036:1575..1664Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20036 1576..1664 -
1691480893.4175146-CDS-H-paniculata_contig20036:1575..16641691480893.4175146-CDS-H-paniculata_contig20036:1575..1664Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20036 1576..1664 -
1622929512.8777335-CDS-H-paniculata_contig20036:1748..19441622929512.8777335-CDS-H-paniculata_contig20036:1748..1944Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20036 1749..1944 -
1691480893.4268947-CDS-H-paniculata_contig20036:1748..19441691480893.4268947-CDS-H-paniculata_contig20036:1748..1944Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20036 1749..1944 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929512.891796-UTR-H-paniculata_contig20036:1944..19591622929512.891796-UTR-H-paniculata_contig20036:1944..1959Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20036 1945..1959 -
1691480893.4349918-UTR-H-paniculata_contig20036:1944..19591691480893.4349918-UTR-H-paniculata_contig20036:1944..1959Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20036 1945..1959 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20036.5151.1

>prot_H-paniculata_contig20036.5151.1 ID=prot_H-paniculata_contig20036.5151.1|Name=mRNA_H-paniculata_contig20036.5151.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=95bp
MELCGHGDAEGLIRNQPDGLLSLSEAHCFLFQMAFALYVGRTELSMRHFD
VKLLNFLVADAAALLGMEDGGGVVLRYAVGAEVVELRMPEERAFV
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mRNA from alignment at H-paniculata_contig20036:1576..1959-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20036.5151.1 ID=mRNA_H-paniculata_contig20036.5151.1|Name=mRNA_H-paniculata_contig20036.5151.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=384bp|location=Sequence derived from alignment at H-paniculata_contig20036:1576..1959- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTACAGTTCATCGGAATGGAGCTATGCGGACACGGGGATGCTGAGGGTCT GATCCGAAACCAGCCGGATGGCCTCCTGTCTCTGTCAGAGGCCCACTGTT TTCTTTTCCAGATGGCGTTTGCGCTGTACGTGGGTAGGACGGAGTTGAGC ATGCGGCACTTCGACGTGAAACTACTCAATTTTTTGGTGGCGGACGCAGC GGCGCTGCTCGGTGGGGTCAGTGGATCGGAGGGGGCGGCGGGGACGCCAG CGGAGCCTGGAGATTTGTCGTCTTTGGGTGATGAACAACTGCTAGGAATG GAGGATGGGGGGGGGGTAGTGTTGAGGTATGCTGTGGGAGCGGAAGTGGT GGAGTTGAGGATGCCTGAAGAGAGGGCTTTCGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig20036:1576..1959-

>mRNA_H-paniculata_contig20036.5151.1 ID=mRNA_H-paniculata_contig20036.5151.1|Name=mRNA_H-paniculata_contig20036.5151.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at H-paniculata_contig20036:1576..1959- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGCTATGCGGACACGGGGATGCTGAGGGTCTGATCCGAAACCAGCC
GGATGGCCTCCTGTCTCTGTCAGAGGCCCACTGTTTTCTTTTCCAGATGG
CGTTTGCGCTGTACGTGGGTAGGACGGAGTTGAGCATGCGGCACTTCGAC
GTGAAACTACTCAATTTTTTGGTGGCGGACGCAGCGGCGCTGCTCGATGG
AGCTATGCGGACACGGGGATGCTGAGGGTCTGATCCGAAACCAGCCGGAT
GGCCTCCTGTCTCTGTCAGAGGCCCACTGTTTTCTTTTCCAGATGGCGTT
TGCGCTGTACGTGGGTAGGACGGAGTTGAGCATGCGGCACTTCGACGTGA
AACTACTCAATTTTTTGGTGGCGGACGCAGCGGCGCTGCTCGGAATGGAG
GATGGGGGGGGGGTAGTGTTGAGGTATGCTGTGGGAGCGGAAGTGGTGGA
GTTGAGGATGCCTGAAGAGAGGGCTTTCGTGGAATGGAGGATGGGGGGGG
GGTAGTGTTGAGGTATGCTGTGGGAGCGGAAGTGGTGGAGTTGAGGATGC
CTGAAGAGAGGGCTTTCGTG
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