mRNA_H-paniculata_contig20029.5147.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20029.5147.1
Unique NamemRNA_H-paniculata_contig20029.5147.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig20029.5147.1 vs. uniprot
Match: D7FTN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTN7_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 2.900e-44
Identity = 79/145 (54.48%), Postives = 90/145 (62.07%), Query Frame = 1
Query:    1 SYGWDNEYGSREYSVPAFEATVHKVSNGEYLEFVKDAGYARRELWTESGWGWKMFRNSKHPQFWISQVACSRVAFLEALDKFGVRGRNSDVLVAAVRCRTSTHLRIGSPGLHDYRLRALFDEVPFPHDWPVIVNFHEAKAFATWK 435
            S+GWDNEYGSRE+SVP+FEA  H V+NGE+LEFV DAGYAR+ELW++ GW WKMFRN K PQFW+S+                                       G  G H YRLR LFDEVP P D PV+VNFHEAKAFATWK
Sbjct:  296 SFGWDNEYGSREFSVPSFEAAKHMVTNGEFLEFVADAGYARQELWSDVGWRWKMFRNVKKPQFWVSE---------------------------------------GPSGFHQYRLRTLFDEVPLPRDSPVLVNFHEAKAFATWK 401          
BLAST of mRNA_H-paniculata_contig20029.5147.1 vs. uniprot
Match: A0A1G8ICW3_9ACTN (5-histidylcysteine sulfoxide synthase n=1 Tax=Nonomuraea jiangxiensis TaxID=633440 RepID=A0A1G8ICW3_9ACTN)

HSP 1 Score: 139 bits (350), Expect = 1.800e-35
Identity = 66/145 (45.52%), Postives = 79/145 (54.48%), Query Frame = 1
Query:    1 SYGWDNEYGSREYSVPAFEATVHKVSNGEYLEFVKDAGYARRELWTESGWGWKMFRNSKHPQFWISQVACSRVAFLEALDKFGVRGRNSDVLVAAVRCRTSTHLRIGSPGLHDYRLRALFDEVPFPHDWPVIVNFHEAKAFATWK 435
            S+GWDNEYG+RE  V  F+A+ + VSNGEY  FV D GY R ELWTE GWGW+ FRN+K PQFW+                                         G  GLH YRLR  FDE+  P DWPV VN+HEAKA+ +W+
Sbjct:  271 SFGWDNEYGTRELDVAGFDASRYLVSNGEYHRFVVDGGYRRPELWTEEGWGWRSFRNAKWPQFWVPD---------------------------------------GPSGLHRYRLRTTFDEIDMPWDWPVCVNYHEAKAYCSWR 376          
BLAST of mRNA_H-paniculata_contig20029.5147.1 vs. uniprot
Match: UPI001E1D9C75 (uncharacterized protein LOC123524473 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D9C75)

HSP 1 Score: 137 bits (345), Expect = 8.040e-35
Identity = 68/146 (46.58%), Postives = 83/146 (56.85%), Query Frame = 1
Query:    1 SYGWDNEYGSREYSVPAFEATVHKVSNGEYLEFVKDAGYARRELWTESGWGWKMFRNSKHPQFWISQVACSRVAFLEALDKFGVRGRNSDVLVAAVRCRTSTHLRIGSPGLHD-YRLRALFDEVPFPHDWPVIVNFHEAKAFATWK 435
            SYGWDNEYG     VP+FEA+ + V+NGE+LEFVKD GY ++E W+E GW WK FR +KHP FWI    C               G  +D L     CR   +      G H  Y+ RA+FD +  P  WPV VN+HEAKAF  WK
Sbjct:  224 SYGWDNEYGEVSCFVPSFEASEYLVTNGEFLEFVKDGGYMKQEYWSEEGWKWKTFRQAKHPMFWICGSGCKS-------------GCGAD-LATYSHCRLPGNTMATDNGNHTPYKYRAMFDNLDMPLSWPVDVNYHEAKAFCHWK 355          
BLAST of mRNA_H-paniculata_contig20029.5147.1 vs. uniprot
Match: K1Q6T7_CRAGI (Uncharacterized protein n=3 Tax=Crassostrea gigas TaxID=29159 RepID=K1Q6T7_CRAGI)

HSP 1 Score: 133 bits (334), Expect = 2.740e-33
Identity = 64/147 (43.54%), Postives = 80/147 (54.42%), Query Frame = 1
Query:    1 SYGWDNEYGSREYSVPAFEATVHKVSNGEYLEFVKDAGYARRELWTESGWGWKMFRNSKHPQFWISQVACSRVAFLEALDKFGVRGRNSDVLVAAVRCRTSTHLR--IGSPGLHDYRLRALFDEVPFPHDWPVIVNFHEAKAFATWK 435
            SYGWDNEYG     VPAFEA+   ++NGEYLEFV+  GY   + WTE GW WK++R SKHP FW+   +C      +          NS          T+ H R  I       Y  RA+FD +P P DWP  VN+H+A+AF  WK
Sbjct:  301 SYGWDNEYGEFSTRVPAFEASKFMITNGEYLEFVESGGYEDEKFWTEEGWKWKVYRQSKHPVFWVCNHSCKGGCGADLSKYSPCHFPNSGTNGVINGSLTNGHSREVINGGEKRTYMYRAMFDVLPLPADWPAEVNYHQARAFCAWK 447          
BLAST of mRNA_H-paniculata_contig20029.5147.1 vs. uniprot
Match: V3ZNI9_LOTGI (Uncharacterized protein n=1 Tax=Lottia gigantea TaxID=225164 RepID=V3ZNI9_LOTGI)

HSP 1 Score: 132 bits (333), Expect = 3.640e-33
Identity = 67/153 (43.79%), Postives = 85/153 (55.56%), Query Frame = 1
Query:    1 SYGWDNEYGSREYSVPAFEATVHKVSNGEYLEFVKDAGYARRELWTESGWGWKMFRNSKHPQFWISQVAC--------SRVAFLEALDKFGVRGRNSDVLVAAVRCRTSTHLRIGSPGLHDYRLRALFDEVPFPHDWPVIVNFHEAKAFATWK 435
            SYGWDNEYG     VPAFEA+   ++NGEYLEFVKD GY R+ LW++ GW WK FR   HP FW+    C        S ++  EA+D       N+  ++            +GSP    +R R +FD +  P DWPV V +HEAKAF  WK
Sbjct:  260 SYGWDNEYGQVTCHVPAFEASKFMITNGEYLEFVKDGGYNRKGLWSQKGWQWKEFRQLVHPVFWVCTKGCNNGCGSNLSTISHCEAVDN------NNGYVIDD---------ELGSPS---FRYRVMFDNIELPLDWPVEVTYHEAKAFCAWK 394          
BLAST of mRNA_H-paniculata_contig20029.5147.1 vs. uniprot
Match: A0A482SN88_9ARCH (5-histidylcysteine sulfoxide synthase (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SN88_9ARCH)

HSP 1 Score: 130 bits (326), Expect = 1.580e-32
Identity = 63/145 (43.45%), Postives = 75/145 (51.72%), Query Frame = 1
Query:    1 SYGWDNEYGSREYSVPAFEATVHKVSNGEYLEFVKDAGYARRELWTESGWGWKMFRNSKHPQFWISQVACSRVAFLEALDKFGVRGRNSDVLVAAVRCRTSTHLRIGSPGLHDYRLRALFDEVPFPHDWPVIVNFHEAKAFATWK 435
            S+GWDNEYG R Y VP  + +  KV+NGEY EFVK+ GYA R  WT+ GW W+ FRNSK P  W+                                       R G  G H+Y LR +FD V  P DWPV+VN+HEA AFA WK
Sbjct:  378 SFGWDNEYGQRVYEVPGCQVSKFKVTNGEYWEFVKEGGYANRAYWTDIGWKWRAFRNSKTPLMWV---------------------------------------RKGPQGYHEYDLRLVFDTVHMPWDWPVVVNYHEATAFAQWK 483          
BLAST of mRNA_H-paniculata_contig20029.5147.1 vs. uniprot
Match: A0A8B8CNS0_CRAVI (LOW QUALITY PROTEIN: ergothioneine biosynthesis protein 1-like n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8CNS0_CRAVI)

HSP 1 Score: 130 bits (326), Expect = 3.110e-32
Identity = 65/148 (43.92%), Postives = 82/148 (55.41%), Query Frame = 1
Query:    1 SYGWDNEYGSREYSVPAFEATVHKVSNGEYLEFVKDAGYARRELWTESGWGWKMFRNSKHPQFWISQVACSRVAFLEALDKFGVRGRNSDVLVAAVRCRTSTHLRIGSPGLHD---YRLRALFDEVPFPHDWPVIVNFHEAKAFATWK 435
            SYGWDNEYG     VPAFEA+   ++NGEYLEFV+  GY   + WTE GW WK FR SKHP FW+    C      + L ++      S          T+ H R  +P   +   Y  RA+FD +P P DWP  VN+H+A+AF  WK
Sbjct:  220 SYGWDNEYGETSVRVPAFEASKFMITNGEYLEFVESGGYEDEKFWTEEGWKWKEFRQSKHPVFWVCNHGCKGGCGAD-LSQYSPCHFPSTANGGMNGSLTNGHTR-DTPSAGEKRTYMYRAMFDVMPLPLDWPAEVNYHQARAFCAWK 365          
BLAST of mRNA_H-paniculata_contig20029.5147.1 vs. uniprot
Match: A0A6P7SQY7_OCTVU (ergothioneine biosynthesis protein 1-like isoform X1 n=4 Tax=Octopus vulgaris TaxID=6645 RepID=A0A6P7SQY7_OCTVU)

HSP 1 Score: 127 bits (318), Expect = 3.720e-31
Identity = 62/144 (43.06%), Postives = 81/144 (56.25%), Query Frame = 1
Query:    1 SYGWDNEYGSREYSVPAFEATVHKVSNGEYLEFVKDAGYARRELWTESGWGWKMFRNSKHPQFWISQVACSRVAFLEALDKFGVRGRNSDVLVAAVRCRTSTHLRIGSPGLHDYRLRALFDEVPFPHDWPVIVNFHEAKAFATW 432
            SYGWDNEYG     VP FEAT + V+N E+L+FV D GY R+ELW++ GW W+ FR + HP FW+    C          K G      + L     C+ S+   +  P    +  RA+FD +  P DWPV VN+HEAKA+ TW
Sbjct:  224 SYGWDNEYGESRCLVPDFEATKYLVTNEEFLKFVTDKGYERQELWSDIGWKWRCFRGAIHPTFWVCNKGC----------KSGC----GETLSNYTHCQLSSSDDLNEP---TFCYRAMFDVITLPRDWPVEVNYHEAKAYCTW 350          
BLAST of mRNA_H-paniculata_contig20029.5147.1 vs. uniprot
Match: UPI00096B3A90 (ergothioneine biosynthesis protein 1-like isoform X1 n=4 Tax=Amphimedon queenslandica TaxID=400682 RepID=UPI00096B3A90)

HSP 1 Score: 127 bits (318), Expect = 3.720e-31
Identity = 56/145 (38.62%), Postives = 79/145 (54.48%), Query Frame = 1
Query:    1 SYGWDNEYGSREYSVPAFEATVHKVSNGEYLEFVKDAGYARRELWTESGWGWKMFRNSKHPQFWISQVACSRVAFLEALDKFGVRGRNSDVLVAAVRCRTSTHLRIGSPGLHDYRLRALFDEVPFPHDWPVIVNFHEAKAFATWK 435
            +YGWDNEYG++   VPAFEAT + ++N E+L+FV D GY+ ++ WT+ GW W  FR  +HP FW+    C              +     +L     C   ++          Y+ RAL+D +  P DWPV VN+HEAKA+  WK
Sbjct:  236 TYGWDNEYGTKTIKVPAFEATQYLITNKEFLDFVADGGYSTKKYWTDEGWQWVQFRQPRHPLFWVCTDEC--------------KSNCGSILSDYSHCNNESNGVTNGSTHSKYKYRALYDVIDMPWDWPVDVNYHEAKAYCRWK 366          
BLAST of mRNA_H-paniculata_contig20029.5147.1 vs. uniprot
Match: A0A836BVE3_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BVE3_9CHLO)

HSP 1 Score: 127 bits (318), Expect = 3.980e-31
Identity = 63/145 (43.45%), Postives = 75/145 (51.72%), Query Frame = 1
Query:    1 SYGWDNEYGSREYSVPAFEATVHKVSNGEYLEFVKDAGYARRELWTESGWGWKMFRNSKHPQFWISQVACSRVAFLEALDKFGVRGRNSDVLVAAVRCRTSTHLRIGSPGLHDYRLRALFDEVPFPHDWPVIVNFHEAKAFATWK 435
            S+GWDNEYG++E  V AF AT  KV+NGE+L FVK  GYA  + W+  GWGWK FRN K P FW+                                         G  GLH Y+LR LFD V    DWPV VN+HEA+AFA W+
Sbjct:  286 SFGWDNEYGTKEVEVGAFRATQFKVTNGEFLRFVKAGGYANPKYWSAEGWGWKTFRNVKWPTFWMPD---------------------------------------GPQGLHRYKLRVLFDAVDMRWDWPVDVNYHEARAFAAWR 391          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20029.5147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTN7_ECTSI2.900e-4454.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1G8ICW3_9ACTN1.800e-3545.525-histidylcysteine sulfoxide synthase n=1 Tax=Nono... [more]
UPI001E1D9C758.040e-3546.58uncharacterized protein LOC123524473 n=1 Tax=Merce... [more]
K1Q6T7_CRAGI2.740e-3343.54Uncharacterized protein n=3 Tax=Crassostrea gigas ... [more]
V3ZNI9_LOTGI3.640e-3343.79Uncharacterized protein n=1 Tax=Lottia gigantea Ta... [more]
A0A482SN88_9ARCH1.580e-3243.455-histidylcysteine sulfoxide synthase (Fragment) n... [more]
A0A8B8CNS0_CRAVI3.110e-3243.92LOW QUALITY PROTEIN: ergothioneine biosynthesis pr... [more]
A0A6P7SQY7_OCTVU3.720e-3143.06ergothioneine biosynthesis protein 1-like isoform ... [more]
UPI00096B3A903.720e-3138.62ergothioneine biosynthesis protein 1-like isoform ... [more]
A0A836BVE3_9CHLO3.980e-3143.45Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20029contigH-paniculata_contig20029:4065..4694 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.0
Seed ortholog evalue1.3e-38
Seed eggNOG ortholog2880.D7FTN7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.dimethylhistidine N-methyltransferase activity
EggNOG OGs2QS9T@2759,COG4301@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size435
Cds size435
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929512.0998704-CDS-H-paniculata_contig20029:4064..43921622929512.0998704-CDS-H-paniculata_contig20029:4064..4392Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20029 4065..4392 +
1691480893.0126624-CDS-H-paniculata_contig20029:4064..43921691480893.0126624-CDS-H-paniculata_contig20029:4064..4392Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20029 4065..4392 +
1622929512.110742-CDS-H-paniculata_contig20029:4587..46941622929512.110742-CDS-H-paniculata_contig20029:4587..4694Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20029 4588..4694 +
1691480893.0246217-CDS-H-paniculata_contig20029:4587..46941691480893.0246217-CDS-H-paniculata_contig20029:4587..4694Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20029 4588..4694 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20029.5147.1prot_H-paniculata_contig20029.5147.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20029 4065..4694 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20029.5147.1

>prot_H-paniculata_contig20029.5147.1 ID=prot_H-paniculata_contig20029.5147.1|Name=mRNA_H-paniculata_contig20029.5147.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=145bp
SYGWDNEYGSREYSVPAFEATVHKVSNGEYLEFVKDAGYARRELWTESGW
GWKMFRNSKHPQFWISQVACSRVAFLEALDKFGVRGRNSDVLVAAVRCRT
STHLRIGSPGLHDYRLRALFDEVPFPHDWPVIVNFHEAKAFATWK
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mRNA from alignment at H-paniculata_contig20029:4065..4694+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20029.5147.1 ID=mRNA_H-paniculata_contig20029.5147.1|Name=mRNA_H-paniculata_contig20029.5147.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=630bp|location=Sequence derived from alignment at H-paniculata_contig20029:4065..4694+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCTACGGCTGGGACAACGAATACGGTTCACGAGAGTACTCCGTGCCGGC TTTCGAAGCTACCGTTCACAAGGTGTCCAACGGCGAGTACCTGGAATTTG TCAAGGATGCCGGCTACGCGCGACGGGAGTTGTGGACGGAGAGCGGGTGG GGGTGGAAGATGTTCAGAAACTCGAAGCACCCGCAGTTTTGGATTTCTCA GGTAGCTTGTTCGCGCGTGGCATTCCTCGAGGCGTTGGATAAGTTTGGCG TACGGGGTAGAAATTCAGACGTTTTGGTCGCAGCGGTGCGCTGCAGAACC TCAACTCACTTGAGGATTGGGTCTCCTGGTTACAATGTCATCCGTCTGGT TCTGCGTCACGAGCTACGAAGATCGAAGCCCCACTCTCTTGACAATACCC ACCTATTGAGAGGTAATGAAAATGTGTGTGTATTTGTGCCATGAGGATTG TCATTTTGAGGCAGCACAACACATCATCTACATGCTGTCTTGTTGCGACA ACGACGCCTGCAGGGGCCGTCAGGACTGCACGACTACCGTCTTCGCGCAT TATTTGACGAAGTGCCATTTCCACACGATTGGCCTGTCATCGTGAACTTC CACGAGGCGAAAGCGTTTGCGACGTGGAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig20029:4065..4694+

>mRNA_H-paniculata_contig20029.5147.1 ID=mRNA_H-paniculata_contig20029.5147.1|Name=mRNA_H-paniculata_contig20029.5147.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=870bp|location=Sequence derived from alignment at H-paniculata_contig20029:4065..4694+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCTACGGCTGGGACAACGAATACGGTTCACGAGAGTACTCCGTGCCGGC
TTTCGAAGCTACCGTTCACAAGGTGTCCAACGGCGAGTACCTGGAATTTG
TCAAGGATGCCGGCTACGCGCGACGGGAGTTGTGGACGGAGAGCGGGTGG
GGGTGGAAGATGTTCAGAAACTCGAAGCACCCGCAGTTTTGGATTTCTCA
GGTAGCTTGTTCGCGCGTGGCATTCCTCGAGGCGTTGGATAAGTTTGGCG
TACGGGGTAGAAATTCAGACGTTTTGGTCGCAGCGGTGCGCTGCAGAACC
TCAACTCACTTGAGGATTGGGTCTCCTGAGCTACGGCTGGGACAACGAAT
ACGGTTCACGAGAGTACTCCGTGCCGGCTTTCGAAGCTACCGTTCACAAG
GTGTCCAACGGCGAGTACCTGGAATTTGTCAAGGATGCCGGCTACGCGCG
ACGGGAGTTGTGGACGGAGAGCGGGTGGGGGTGGAAGATGTTCAGAAACT
CGAAGCACCCGCAGTTTTGGATTTCTCAGGTAGCTTGTTCGCGCGTGGCA
TTCCTCGAGGCGTTGGATAAGTTTGGCGTACGGGGTAGAAATTCAGACGT
TTTGGTCGCAGCGGTGCGCTGCAGAACCTCAACTCACTTGAGGATTGGGT
CTCCTGGACTGCACGACTACCGTCTTCGCGCATTATTTGACGAAGTGCCA
TTTCCACACGATTGGCCTGTCATCGTGAACTTCCACGAGGCGAAAGCGTT
TGCGACGTGGAAGGACTGCACGACTACCGTCTTCGCGCATTATTTGACGA
AGTGCCATTTCCACACGATTGGCCTGTCATCGTGAACTTCCACGAGGCGA
AAGCGTTTGCGACGTGGAAG
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