mRNA_H-paniculata_contig20019.5141.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20019.5141.1
Unique NamemRNA_H-paniculata_contig20019.5141.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20019.5141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20019contigH-paniculata_contig20019:2946..3859 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size331
Cds size195
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20019.5141.1prot_H-paniculata_contig20019.5141.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20019 2946..3723 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929511.4188976-CDS-H-paniculata_contig20019:2945..29731622929511.4188976-CDS-H-paniculata_contig20019:2945..2973Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20019 2946..2973 +
1691480892.7615807-CDS-H-paniculata_contig20019:2945..29731691480892.7615807-CDS-H-paniculata_contig20019:2945..2973Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20019 2946..2973 +
1622929511.4320295-CDS-H-paniculata_contig20019:3556..37231622929511.4320295-CDS-H-paniculata_contig20019:3556..3723Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20019 3557..3723 +
1691480892.7709947-CDS-H-paniculata_contig20019:3556..37231691480892.7709947-CDS-H-paniculata_contig20019:3556..3723Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20019 3557..3723 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929511.4434063-UTR-H-paniculata_contig20019:3723..38591622929511.4434063-UTR-H-paniculata_contig20019:3723..3859Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20019 3724..3859 +
1691480892.779408-UTR-H-paniculata_contig20019:3723..38591691480892.779408-UTR-H-paniculata_contig20019:3723..3859Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20019 3724..3859 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20019.5141.1

>prot_H-paniculata_contig20019.5141.1 ID=prot_H-paniculata_contig20019.5141.1|Name=mRNA_H-paniculata_contig20019.5141.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp
SRQAQLHTRGHVAVDDAAEFDYLKQKKYGNWQKGLCKGSVETVSSPSLRQ
LLLPSGRLEAYRWP*
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mRNA from alignment at H-paniculata_contig20019:2946..3859+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20019.5141.1 ID=mRNA_H-paniculata_contig20019.5141.1|Name=mRNA_H-paniculata_contig20019.5141.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=914bp|location=Sequence derived from alignment at H-paniculata_contig20019:2946..3859+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTCGCCAGGCGCAACTTCACACGAGAGGTGAGCAACACTTGACTATGAA
TTACCGCCAGAGATGATTTCAAGTAAGGATGTTGAGAGTGAACTTTTCTG
TTCTTCTCCATCTTGGTCGGGTGCTTCGTCTGGCCATCTCGTACTCTTCA
CGTCGTTTCTTGTTGATGTTGTGGAGGTGTGAGGTGTGTCCCGCGATGCG
CGCAATATAGATTATCTTTACTCGCGTGGATGAATGCGCGATTTGTACGA
GCCATGTTGTGCAACAACGATTTCTTTCGTTTTTCACGCGGCAACCCTCA
GTCAGGTGCTTCCGAACCATGTCCCGACGGAGCCAGGCCTTCACAGCGTG
CGATATGGTCTCTCCTTCGCGCTCAAGGGTTCTCGGGAGAGACTAGCCGC
TGCATAGCACTGTGACGGCCAAACCTCACGTTCATGGCGAGGAAGACACA
AGACAGGTTGCTGTGCACCATACACTATGGCGGTGTCACATCGCTCCATA
ATATACGGATGTTCATCCTGATCCCACACGCACGAACTCGAACGCCTCGC
CATGCCACACCCTCAAGCATGACGTCCATTTGTGTTCGCCCCACCTCAAA
TCCAATTGCAGGCCATGTCGCAGTGGACGACGCTGCAGAGTTTGACTACC
TAAAGCAGAAAAAGTACGGCAACTGGCAAAAGGGGCTGTGCAAAGGGTCT
GTAGAGACGGTTTCCTCGCCAAGCCTACGCCAGCTTCTTCTACCGTCTGG
ACGGTTGGAGGCTTACCGCTGGCCGTGACCCACGTATCACTATGGTCGGC
TATCAGAGGACAGTCGTCGGCGCTACGACCCTGCGCATGGACCTTGCGAC
AAGCACAAATTCTGGGCACGGGGTGGCTACAGGGGGAAATCGAGGGCACT
TCGGCGGCAAATGG
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Coding sequence (CDS) from alignment at H-paniculata_contig20019:2946..3859+

>mRNA_H-paniculata_contig20019.5141.1 ID=mRNA_H-paniculata_contig20019.5141.1|Name=mRNA_H-paniculata_contig20019.5141.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig20019:2946..3859+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTCGCCAGGCGCAACTTCACACGAGAGTCTCGCCAGGCGCAACTTCACA
CGAGAGGCCATGTCGCAGTGGACGACGCTGCAGAGTTTGACTACCTAAAG
CAGAAAAAGTACGGCAACTGGCAAAAGGGGCTGTGCAAAGGGTCTGTAGA
GACGGTTTCCTCGCCAAGCCTACGCCAGCTTCTTCTACCGTCTGGACGGT
TGGAGGCTTACCGCTGGCCGTGAGCCATGTCGCAGTGGACGACGCTGCAG
AGTTTGACTACCTAAAGCAGAAAAAGTACGGCAACTGGCAAAAGGGGCTG
TGCAAAGGGTCTGTAGAGACGGTTTCCTCGCCAAGCCTACGCCAGCTTCT
TCTACCGTCTGGACGGTTGGAGGCTTACCGCTGGCCGTGA
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