mRNA_H-paniculata_contig1080.514.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1080.514.1 vs. uniprot
Match: A0A6H5L369_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L369_9PHAE) HSP 1 Score: 254 bits (648), Expect = 2.410e-64 Identity = 282/958 (29.44%), Postives = 391/958 (40.81%), Query Frame = 3
Query: 6 LVAAGADIDKPDNRGRTALHVAYLCGNFGAAHELLQQGASASARDLHHRTPMQMLQQHRTARSRPLSGSAATTSHGRSGSGHKAAVTSPSVSARRDRPFADSPTDGLPHDILS--------------------------------RRESLTAARSVKFVCYDEAAG----------------SLSTVSQEGREGASPPGSSFSLDLAAGSRQEPPVTLRAPTCPNT--------AVIHSPAEDNSSPALAAPVHLGDEGFPLGQKGVYDFESVY--------------------------------------PDGSQEATTVVVEATPTSKCCKCGRAIASTGCKEFDSNDNNRPATRKAPAATLPTVITQEDSETQVLEGNAQTEVSLSEDLALPSRTYVMSVTPKIRSRSLSGSKISRQTSTILPAWQRGRCEHRSRSAGRARAQSASNWGG-RGRHHRLFLRSI-------------------------ESSRIRQPESKGRGKTRRSSARSGGTQGVVCRRNILKPGDEVPDYVAGQRRWIWAKISAASAAEREAQNSQRREACRSPLRI-------KMETLAASNVSEKERQRNRAGRKPEYPRPPGGREGRDDSGKLAGRPSSSPAALSPPTIFTAAPLA----------------PFGGRLCIKCDYSGRWDITGAFLGGWGDSVGGNV-----------DVGGVACWHRTVTESYRIAQLWRKSHTDGSEFWWAKQRTSQAGSTVVVKSPGE---NGESWVSFTREWGTLKYLQEEGWRDGRGPLSVGLIAAFEKERSLVLSVPAATRTLREIGQRMHAKRKTRGGQAAED-MFCAKVTSLAIQALRAVCWLHHCGLICGDITPDNFV--SPGGGTFVGRSSHICGGSLSKEKTHQRGGSYRSEEVARG--------------DIRLLSFRSVTRRPDDAGGCPKHPLLQ 2357
LVAAGA++DK ++RGRTALH+AYL N A ELL++GAS++ RD +T QML+ + R RP +GS+A R S + RR P P G H S R + ++R K V E A SLST+ + GS+ +L + AG+ ++ T T P A++ A+D +A P +G D S Y P A T++ EA+ G + G D + ++ P R A + ++ E + E N E+S L R + + S +L+ + R+ R +GR+ Q + +G RG + R P + R + R + ++ G +V EVP+YV G+RR +WA+ SA A R + +RRE SP + + A + KER RN R GRD GRP SSPAAL T A P+GGR C+KCD RW G F+G G G+ D G W++TV++ YR+ + W S D E WWAK R +G+ VVVK + + W +F REWG L+YLQEEG GR PLSVGL+ AFE ERSLVLS+PA +RTLRE+GQ MH++R+++ + ++ +F +V SLA QA RAV WLHH GLI GD+TPDNF+ S GGG GRSS G +K H RS +G ++RL++ RS RRPD AGGCP+HPLL+
Sbjct: 140 LVAAGAEVDKANHRGRTALHIAYLSRNHETASELLERGASSALRDNFGKTAQQMLELSKPVRRRPWTGSSAIPGGSRELS-----------ACRRGLPCTSRPRTGAMHTGSSGLIPQFVPLLPPTALWLRAYTATGICGGSAHAREAASASSRGQKSVAAAETAAADRHLHHDRGQIDVGDSLSTLPPRSSVANAKEGSASALTVVAGAERDGAGTSGLATSPTECWRCHREMAILD--ADDRHHQRVAGSYTGAASTSPYDARGGLDHNSYYSSSGADNEAAGPRGDTAGGGVTYASRTGVAPRQDQLRRPPSPGVAETLLAEASAFGTMTTDGSPTSGGGGGGVDGDASHAPRGRADVAGRPVSQAAVQEEEEE--EANQILELSF-----LHVRRHNAGEGKESASENLAAA---RERXXXXXXXXXXXXXXXXRISGRSPNQRSQRYGVVRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQRRFFCPGDEARTRVR-CNGKTWGQFTIV----------EVPEYVVGRRRMLWAQRSAERYARRVSDLKRRREEIASPXXXXXXXXXDREKRRAHRELERKERIRNSPLRW-----------GRD------GRPCSSPAALQATQSSTEPSAASSPARDYHQRRPSTAGPYGGRSCLKCDPR-RW-YRGEFMGELGGLGAGSPXXXXXXXXXEDDGEGGRLWNKTVSDRYRLLRPWTTSPLDEGELWWAKPRLCGSGTAVVVKVLADGKRDATGWEAFIREWGVLEYLQEEGRVSGREPLSVGLVCAFETERSLVLSIPAGSRTLREVGQHMHSERRSKKSRISDGGVFNDQVESLATQACRAVGWLHHHGLISGDVTPDNFILLSRGGGG-TGRSS--TSGGCHSDKGHS---PVRSPSRGQGXXXXXXXXXXXXESELRLVAGRSAARRPDAAGGCPRHPLLE 1038
BLAST of mRNA_H-paniculata_contig1080.514.1 vs. uniprot
Match: D8LDY0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDY0_ECTSI) HSP 1 Score: 190 bits (482), Expect = 8.050e-46 Identity = 141/369 (38.21%), Postives = 184/369 (49.86%), Query Frame = 3
Query: 1032 RSRSAGRARAQSASNWGGRGRHHRLFLRSIESSRIRQPESKGRGKTRRSSARSGGTQGVVCRRNILKPGDEVPDYVAGQRRWIWAKISAASAAEREAQNSQRREACRSPLRIKMETLAASNVSEKERQRNRAGRKPEYPRPPGGREGRDDSGKLAGRPSSSPAALSPPTIFTA----------------APLAPFGGRLCIKCDYSGRWDITGAFLGGWGDSVGGN----------VDVG-GVACWHRTVTESYRIAQLWRKSHTDGSEFWWAKQRTSQAGSTVVVKSPGE---NGESWVSFTREWGTLKYLQEEGWRDGRGPLSVGLIAAFEKERSLVLSVPAATRTLREIGQRMHAKRKTRGGQAAE 2048
R R +GR+ Q + G+ R R R+ + RG G +R PGDEVP+YV G+RR +WA+ SA A R + +RRE SP R KM AA+ EK R + K P R RD GRP SSPAAL T + P+GGR C+KCD RW G F+GG G G+ D G G W+R V++ YR+ + W S D SE WWAK R S +G+ VVVK + + W +F REWG LKYLQEEG GR PLSVGL+ AFE ERSLVLS+PA +RTL+E+GQ+MH++R+++ ++
Sbjct: 428 RDRISGRSPNQRSRRHAGKRGGRRRATTGAAGRRARKRNDRARG----GDGAGRGASATGQQRRFFCPGDEVPEYVVGRRRMLWAQRSAEQYARRVSDLKRRREEIASPRRQKM---AAAADREKRRAQRELESKERVRNSPL-RWDRD------GRPCSSPAALPAAQSSTEPSSPSSPARGHHQRRPSTAGPYGGRSCLKCDPR-RW-YRGEFMGGLGGLGTGSRPPPRRGGRQEDEGEGGRLWNRIVSDRYRLLRPWTTSPLDDSELWWAKPRLSGSGTAVVVKVLADGKRDATGWEAFIREWGVLKYLQEEGRVGGREPLSVGLVCAFETERSLVLSIPAGSRTLKEVGQQMHSERRSKKNSVSD 780 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1080.514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1080.514.1 >prot_H-paniculata_contig1080.514.1 ID=prot_H-paniculata_contig1080.514.1|Name=mRNA_H-paniculata_contig1080.514.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=926bp MATDMKAGRERGGLADDDVGVNKLAHNENLQGANFMPAGEVTIFSIVPGLback to top mRNA from alignment at H-paniculata_contig1080:2641..17267- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1080.514.1 ID=mRNA_H-paniculata_contig1080.514.1|Name=mRNA_H-paniculata_contig1080.514.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=14627bp|location=Sequence derived from alignment at H-paniculata_contig1080:2641..17267- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1080:2641..17267- >mRNA_H-paniculata_contig1080.514.1 ID=mRNA_H-paniculata_contig1080.514.1|Name=mRNA_H-paniculata_contig1080.514.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5556bp|location=Sequence derived from alignment at H-paniculata_contig1080:2641..17267- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |