prot_H-paniculata_contig20015.5139.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig20015.5139.1
Unique Nameprot_H-paniculata_contig20015.5139.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length277
Homology
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BLAST of mRNA_H-paniculata_contig20015.5139.1 vs. uniprot
Match: A0A6H5JES4_9PHAE (Misat_Tub_SegII domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JES4_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 7.550e-39
Identity = 109/245 (44.49%), Postives = 136/245 (55.51%), Query Frame = 0 
Query:    1 MTFATLSAWLPFPQPDATAETLYRLFSSSAVTTPSAPPISAPSLSSPSAMANGGCGKAPGGGMVDLGPGFRMREALLSRRRGRDSVVEELGGSAGARRVFSRIMVSRGLSAPCSSQLAVLEQVLSSGAVGTGSAYAISTPIPIPISFPLLFRESVGSRGEELLHPVATDHGKGGGSAAPSQWCGGRVRG-GGGSR---TRSAFRVMCDDVSGVAALEKNSAMGDFFGKVCVLYLGLLCMGWASRA 241
            MT ATLSAWLP P PDA+AETL RL S  A ++  A     PSL+ PSA             MV LGP  R R   L R RG+  V     G     RV+SR +V RG +AP   QL  LE+VL   AVG+G +Y++STP+PIPI++PL+FRES+G RGE  L P A       G++  ++W  G   G GGG R   T    RVMCD +SGVA  E++S MG F  +     +G    G A  A
Sbjct:  435 MTLATLSAWLPLPHPDASAETLARLLSEHATSSRDAGSSDDPSLA-PSASK-----------MVSLGPVARRRRGNLRRGRGKLLVPPSAAGGERVSRVYSRKIVLRGCTAPRDHQLHALEEVLGRSAVGSGCSYSVSTPLPIPITYPLIFRESLGVRGE--LMPSA-------GASRAAEWASGGASGKGGGGRGAITSGELRVMCDHISGVACTERDSRMGSFISQASCGRIGREARGRAPGA 658
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20015.5139.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JES4_9PHAE7.550e-3944.49Misat_Tub_SegII domain-containing protein n=2 Tax=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 239..276
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..12
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 221..238
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..220

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20015contigH-paniculata_contig20015:2635..4355 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20015.5139.1mRNA_H-paniculata_contig20015.5139.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig20015 2068..4366 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig20015.5139.1 ID=prot_H-paniculata_contig20015.5139.1|Name=mRNA_H-paniculata_contig20015.5139.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=277bp
MTFATLSAWLPFPQPDATAETLYRLFSSSAVTTPSAPPISAPSLSSPSAM
ANGGCGKAPGGGMVDLGPGFRMREALLSRRRGRDSVVEELGGSAGARRVF
SRIMVSRGLSAPCSSQLAVLEQVLSSGAVGTGSAYAISTPIPIPISFPLL
FRESVGSRGEELLHPVATDHGKGGGSAAPSQWCGGRVRGGGGSRTRSAFR
VMCDDVSGVAALEKNSAMGDFFGKVCVLYLGLLCMGWASRAMKSDSWSII
DLPKNIGYNEIDQYIFFPAGAQLYRI*
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