mRNA_H-paniculata_contig20015.5139.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20015.5139.1
Unique NamemRNA_H-paniculata_contig20015.5139.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig20015.5139.1 vs. uniprot
Match: A0A6H5JES4_9PHAE (Misat_Tub_SegII domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JES4_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 5.530e-39
Identity = 112/248 (45.16%), Postives = 139/248 (56.05%), Query Frame = 3 
Query:    3 GADMTFATLSAWLPFPQPDATAETLYRLFSSSAVTTPSAPPISAPSLSSPSAMANGGCGKAPGGGMVDLGPGFRMREALLSRRRGRDSVVEELGGSAGARRVFSRIMVSRGLSAPCSSQLAVLEQVLSSGAVGTGSAYAISTPIPIPISFPLLFRESVGSRGEELLHPVATDHGKGGGSAAPSQWCGGRVRG-GGGSR---TRSAFRVMCDDVSGVAALEKNSAMGDFFGKVCVLYLGLLCMGWASRA 734
            GADMT ATLSAWLP P PDA+AETL RL S  A ++  A     PSL+ PSA             MV LGP  R R   L R RG+  V     G     RV+SR +V RG +AP   QL  LE+VL   AVG+G +Y++STP+PIPI++PL+FRES+G RGE  L P A       G++  ++W  G   G GGG R   T    RVMCD +SGVA  E++S MG F  +     +G    G A  A
Sbjct:  432 GADMTLATLSAWLPLPHPDASAETLARLLSEHATSSRDAGSSDDPSLA-PSASK-----------MVSLGPVARRRRGNLRRGRGKLLVPPSAAGGERVSRVYSRKIVLRGCTAPRDHQLHALEEVLGRSAVGSGCSYSVSTPLPIPITYPLIFRESLGVRGE--LMPSA-------GASRAAEWASGGASGKGGGGRGAITSGELRVMCDHISGVACTERDSRMGSFISQASCGRIGREARGRAPGA 658
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20015.5139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JES4_9PHAE5.530e-3945.16Misat_Tub_SegII domain-containing protein n=2 Tax=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20015contigH-paniculata_contig20015:2068..4366 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score154.1
Seed ortholog evalue9.8e-35
Seed eggNOG ortholog2880.D7FL30
Preferred nameMSTO1
KEGG rclassRC00443
KEGG koko:K01679,ko:K12396,ko:K17408
KEGG ReactionR01082
KEGG Pathwayko00020,ko00620,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko04142,ko04934,ko05200,ko05211,map00020,map00620,map00720,map01100,map01110,map01120,map01130,map01200,map04142,map04934,map05200,map05211
KEGG ModuleM00009,M00011,M00173,M00376
Hectar predicted targeting categoryother localisation
GOsGO:0000002,GO:0000070,GO:0000226,GO:0000278,GO:0000280,GO:0000819,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005856,GO:0006276,GO:0006996,GO:0007005,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007059,GO:0008150,GO:0009987,GO:0016020,GO:0016043,GO:0019867,GO:0022402,GO:0022607,GO:0031090,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0048285,GO:0048311,GO:0051179,GO:0051225,GO:0051276,GO:0051640,GO:0051641,GO:0051646,GO:0070925,GO:0071840,GO:0090307,GO:0098588,GO:0098805,GO:0098813,GO:0140014,GO:1902850,GO:1903047
EggNOG free text desc.mitochondrion organization
EggNOG OGsKOG2530@1,KOG2530@2759
Ec32 ortholog descriptionMisato Segment II tubulin-like domain
Ec32 orthologEc-05_006860.1
EC4.2.1.2
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko03029,ko04131
Exons2
Model size1409
Cds size831
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20015.5139.1prot_H-paniculata_contig20015.5139.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20015 2635..4355 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929511.1829371-UTR-H-paniculata_contig20015:2067..26341622929511.1829371-UTR-H-paniculata_contig20015:2067..2634Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20015 2068..2634 -
1691480892.6350603-UTR-H-paniculata_contig20015:2067..26341691480892.6350603-UTR-H-paniculata_contig20015:2067..2634Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20015 2068..2634 -
1622929511.2326603-UTR-H-paniculata_contig20015:4355..43661622929511.2326603-UTR-H-paniculata_contig20015:4355..4366Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20015 4356..4366 -
1691480892.6650546-UTR-H-paniculata_contig20015:4355..43661691480892.6650546-UTR-H-paniculata_contig20015:4355..4366Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20015 4356..4366 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929511.201993-CDS-H-paniculata_contig20015:2634..30991622929511.201993-CDS-H-paniculata_contig20015:2634..3099Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20015 2635..3099 -
1691480892.646917-CDS-H-paniculata_contig20015:2634..30991691480892.646917-CDS-H-paniculata_contig20015:2634..3099Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20015 2635..3099 -
1622929511.219583-CDS-H-paniculata_contig20015:3989..43551622929511.219583-CDS-H-paniculata_contig20015:3989..4355Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20015 3990..4355 -
1691480892.6562004-CDS-H-paniculata_contig20015:3989..43551691480892.6562004-CDS-H-paniculata_contig20015:3989..4355Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20015 3990..4355 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20015.5139.1

>prot_H-paniculata_contig20015.5139.1 ID=prot_H-paniculata_contig20015.5139.1|Name=mRNA_H-paniculata_contig20015.5139.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=277bp
MTFATLSAWLPFPQPDATAETLYRLFSSSAVTTPSAPPISAPSLSSPSAM
ANGGCGKAPGGGMVDLGPGFRMREALLSRRRGRDSVVEELGGSAGARRVF
SRIMVSRGLSAPCSSQLAVLEQVLSSGAVGTGSAYAISTPIPIPISFPLL
FRESVGSRGEELLHPVATDHGKGGGSAAPSQWCGGRVRGGGGSRTRSAFR
VMCDDVSGVAALEKNSAMGDFFGKVCVLYLGLLCMGWASRAMKSDSWSII
DLPKNIGYNEIDQYIFFPAGAQLYRI*
back to top

mRNA from alignment at H-paniculata_contig20015:2068..4366-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20015.5139.1 ID=mRNA_H-paniculata_contig20015.5139.1|Name=mRNA_H-paniculata_contig20015.5139.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2299bp|location=Sequence derived from alignment at H-paniculata_contig20015:2068..4366- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCGCCGACATGACGTTTGCCACTCTCTCGGCCTGGCTGCCCTTTCCT
CAACCGGACGCGACGGCAGAAACCCTCTACCGCCTCTTTTCTTCGTCAGC
TGTAACCACCCCTTCAGCACCCCCCATCTCCGCACCCTCGTTGTCATCAC
CTTCGGCAATGGCGAATGGAGGATGTGGCAAGGCGCCGGGGGGGGGGATG
GTGGATCTTGGCCCCGGGTTTCGAATGAGGGAGGCGTTGTTGTCCAGGCG
GCGGGGTCGGGACTCGGTGGTGGAGGAATTAGGGGGGAGTGCGGGTGCTA
GGAGGGTGTTTTCAAGAATTATGGTGTCGAGGGGGTTATCGGCGCCGTGC
TCAAGCCAGCTGGCTGTGCTGGAACAGGTTTTTCGTGTCGCACTTTTTGC
TATTATTTTTTCTTTTTTTTCTTGTCTTCTTTTTCACGTAGTCCTTGAAA
ATAATTAGTATTAGTATTAGTAAAATCTCTTGAGGTTTGGTTGCGTTTCT
CTCTCTGCCGGTAAGCTCAAGTTTAAGGCCAATGTTATTAAGGGTTCGGT
TTGTCTTGTAAACACATGTAATGGCACTGATTTATGGGGTCTCTTCACAT
GACGAACCACCAAGTTTTCACATGATCGACCGCGAACCGACCAAAAATCT
CACATGAAAATCCGCGAACCGGTCAACAAACGAAAATTCTGGCATGTTAC
ATCCTTGACTCGTGCAATTCTCCCATGATTATCTGTGTACCGGTTCATCA
CGTGAGCATGTGAAGGAGATATGTGTAATGAGCTGTCATGCGAAAAGCCT
AGCTGCTTTCTGTTCAGACAATCGTTGTACTTGCTATCTCTGCACTTCTG
AAGGCACTCTGATTCGCCCGTTTCTATTTGACTTTGACTTTTGACTTTTG
ACTTTTGAAATCGACGTTTTTTTTTTTTTTTTTTTTCCCGATGATATTGA
TTACAGTACAGTTAGTACCAATGTTCTAACTGCGTTTCAGTGTGTTGCTG
GTCCTCCTCTTTAAATTACAAGAAGAGCTGATGGTCTCACTCGCATATAT
GCTTGAAAAAATATGTCTCACTCAACCCCGAGAAATGACTGTCATCCTTT
AGTCTTGATACCGCTAAAATCCGTTTATCTTCCGTATTGGTTACATCCAT
CCGTCCGTCCATCCATCCGTCCATCCATCCATCCGTCCGTCCGTCCATCC
ATCCATCCGTCCGTCCATCCATCCATCCATCGATCCATCCATCTATCCCT
CCATTTCGGTTGCGCAGGTTCTGTCCTCAGGCGCCGTAGGCACCGGGTCA
GCCTACGCAATATCCACTCCCATCCCCATCCCTATCAGCTTTCCCTTGCT
ATTTAGAGAATCCGTGGGCTCGAGAGGCGAGGAGCTCTTGCATCCGGTAG
CCACCGATCATGGGAAGGGTGGGGGGAGTGCAGCACCGTCGCAGTGGTGT
GGGGGCCGGGTTCGTGGAGGTGGTGGGTCTAGGACCCGGTCGGCGTTTCG
GGTTATGTGCGATGATGTGTCCGGTGTGGCTGCTTTGGAGAAGAATTCGG
CTATGGGAGACTTCTTTGGGAAGGTTTGTGTCCTGTATTTAGGTCTATTG
TGCATGGGTTGGGCATCCCGGGCGATGAAGAGTGACAGCTGGTCGATAAT
TGATTTGCCCAAAAATATCGGTTACAACGAAATCGATCAATATATTTTTT
TCCCGGCCGGTGCGCAGCTCTATAGGATTTAGGCACCTGATAAGAAGATC
GGAAATCGGTTATTTTAATGACCGCGTTAGCCCAAGATATTGGTTGAGAA
CGAACCGGTCAACCTCTAGTGCTCTTTTGTTTGGCGCAGTGCTCCATTCT
GTAGTGGGACACTGGCTAAAAAAATCGAGGTTTAGTTGACGATGTGCCCA
ACATGCTGTTTAAAACCAAATCGGTTCGCTTTTTTTCTCCTCCTTTCTGC
CGGATGCGTAACTGCGGGTGGGTCTTGTACCGTGCTTTTTCTGAGATATT
ATGAGCTACAGCAGGGATGCGGGTGGTGGTGGCTTCCCCCCATGATTTGA
GTTCAGTCAGGCTATTGGTTGTGTTGTGTTGAGCTTGCTTTAGATGAAGT
TACATGTTCTTTCCGTTGTCCTGACTGTACAAGATCTTCGTACTTTAAAC
CTCGGCGCGGTTGGCCGCGCGTATTCCCGTCTTTCCTCGCTCTTGGTGTG
TTGTTTGGTTATAAGCGTGAGTATTTTATGCCTTGACGATCGCGCATGCT
TTAATATATTCCCACTTTGGAGTGACCACCGCTGCATACATCAGGGTAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig20015:2068..4366-

>mRNA_H-paniculata_contig20015.5139.1 ID=mRNA_H-paniculata_contig20015.5139.1|Name=mRNA_H-paniculata_contig20015.5139.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1662bp|location=Sequence derived from alignment at H-paniculata_contig20015:2068..4366- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGTTTGCCACTCTCTCGGCCTGGCTGCCCTTTCCTCAACCGGACGC
GACGGCAGAAACCCTCTACCGCCTCTTTTCTTCGTCAGCTGTAACCACCC
CTTCAGCACCCCCCATCTCCGCACCCTCGTTGTCATCACCTTCGGCAATG
GCGAATGGAGGATGTGGCAAGGCGCCGGGGGGGGGGATGGTGGATCTTGG
CCCCGGGTTTCGAATGAGGGAGGCGTTGTTGTCCAGGCGGCGGGGTCGGG
ACTCGGTGGTGGAGGAATTAGGGGGGAGTGCGGGTGCTAGGAGGGTGTTT
TCAAGAATTATGGTGTCGAGGGGGTTATCGGCGCCGTGCTCAAGCCAGCT
GGCTGTGCTGGAACAGATGACGTTTGCCACTCTCTCGGCCTGGCTGCCCT
TTCCTCAACCGGACGCGACGGCAGAAACCCTCTACCGCCTCTTTTCTTCG
TCAGCTGTAACCACCCCTTCAGCACCCCCCATCTCCGCACCCTCGTTGTC
ATCACCTTCGGCAATGGCGAATGGAGGATGTGGCAAGGCGCCGGGGGGGG
GGATGGTGGATCTTGGCCCCGGGTTTCGAATGAGGGAGGCGTTGTTGTCC
AGGCGGCGGGGTCGGGACTCGGTGGTGGAGGAATTAGGGGGGAGTGCGGG
TGCTAGGAGGGTGTTTTCAAGAATTATGGTGTCGAGGGGGTTATCGGCGC
CGTGCTCAAGCCAGCTGGCTGTGCTGGAACAGGTTCTGTCCTCAGGCGCC
GTAGGCACCGGGTCAGCCTACGCAATATCCACTCCCATCCCCATCCCTAT
CAGCTTTCCCTTGCTATTTAGAGAATCCGTGGGCTCGAGAGGCGAGGAGC
TCTTGCATCCGGTAGCCACCGATCATGGGAAGGGTGGGGGGAGTGCAGCA
CCGTCGCAGTGGTGTGGGGGCCGGGTTCGTGGAGGTGGTGGGTCTAGGAC
CCGGTCGGCGTTTCGGGTTATGTGCGATGATGTGTCCGGTGTGGCTGCTT
TGGAGAAGAATTCGGCTATGGGAGACTTCTTTGGGAAGGTTTGTGTCCTG
TATTTAGGTCTATTGTGCATGGGTTGGGCATCCCGGGCGATGAAGAGTGA
CAGCTGGTCGATAATTGATTTGCCCAAAAATATCGGTTACAACGAAATCG
ATCAATATATTTTTTTCCCGGCCGGTGCGCAGCTCTATAGGATTTAGGTT
CTGTCCTCAGGCGCCGTAGGCACCGGGTCAGCCTACGCAATATCCACTCC
CATCCCCATCCCTATCAGCTTTCCCTTGCTATTTAGAGAATCCGTGGGCT
CGAGAGGCGAGGAGCTCTTGCATCCGGTAGCCACCGATCATGGGAAGGGT
GGGGGGAGTGCAGCACCGTCGCAGTGGTGTGGGGGCCGGGTTCGTGGAGG
TGGTGGGTCTAGGACCCGGTCGGCGTTTCGGGTTATGTGCGATGATGTGT
CCGGTGTGGCTGCTTTGGAGAAGAATTCGGCTATGGGAGACTTCTTTGGG
AAGGTTTGTGTCCTGTATTTAGGTCTATTGTGCATGGGTTGGGCATCCCG
GGCGATGAAGAGTGACAGCTGGTCGATAATTGATTTGCCCAAAAATATCG
GTTACAACGAAATCGATCAATATATTTTTTTCCCGGCCGGTGCGCAGCTC
TATAGGATTTAG
back to top