mRNA_H-paniculata_contig20011.5137.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20011.5137.1
Unique NamemRNA_H-paniculata_contig20011.5137.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20011.5137.1 vs. uniprot
Match: A0A078BGN1_9BURK (Uncharacterized protein n=1 Tax=Thiomonas sp. CB2 TaxID=554131 RepID=A0A078BGN1_9BURK)

HSP 1 Score: 47.0 bits (110), Expect = 3.540e-5
Identity = 25/50 (50.00%), Postives = 28/50 (56.00%), Query Frame = -1 
Query:   28 WSMWFNAIIHA*PYQFL*VCHLYGDMMYFET---FRCCMAVVSSCREMFG 168
            W MWFN++    PY  L    L  D +  E     RCCMAVVSSCREM G
Sbjct:   42 WMMWFNSMQREKPYLPLTCQELTRDGLVLEREPGHRCCMAVVSSCREMLG 91
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20011.5137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A078BGN1_9BURK3.540e-550.00Uncharacterized protein n=1 Tax=Thiomonas sp. CB2 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20011contigH-paniculata_contig20011:823..1017 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size195
Cds size195
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929511.028168-CDS-H-paniculata_contig20011:822..10171622929511.028168-CDS-H-paniculata_contig20011:822..1017Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20011 823..1017 +
1691480892.572733-CDS-H-paniculata_contig20011:822..10171691480892.572733-CDS-H-paniculata_contig20011:822..1017Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20011 823..1017 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20011.5137.1prot_H-paniculata_contig20011.5137.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20011 823..1017 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20011.5137.1

>prot_H-paniculata_contig20011.5137.1 ID=prot_H-paniculata_contig20011.5137.1|Name=mRNA_H-paniculata_contig20011.5137.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp
QGLRSYLELTKHLTTRADDGHATPESFKIHHVSIKMTNLQELVRLRVYYR
IKPHTPPRGLTADS*
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mRNA from alignment at H-paniculata_contig20011:823..1017+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20011.5137.1 ID=mRNA_H-paniculata_contig20011.5137.1|Name=mRNA_H-paniculata_contig20011.5137.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=195bp|location=Sequence derived from alignment at H-paniculata_contig20011:823..1017+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGTTTGCGCTCGTACTTAGAATTAACCAAACATCTCACGACACGAGC
TGACGACGGCCATGCAACACCTGAAAGTTTCAAAATACATCATGTCTCCA
TAAAGATGACAAACTTACAAGAACTGGTAAGGTTACGCGTGTATTATCGC
ATTAAACCACATACTCCACCCCGAGGGCTGACGGCTGACAGCTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig20011:823..1017+

>mRNA_H-paniculata_contig20011.5137.1 ID=mRNA_H-paniculata_contig20011.5137.1|Name=mRNA_H-paniculata_contig20011.5137.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig20011:823..1017+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGTTTGCGCTCGTACTTAGAATTAACCAAACATCTCACGACACGAGC
TGACGACGGCCATGCAACACCTGAAAGTTTCAAAATACATCATGTCTCCA
TAAAGATGACAAACTTACAAGAACTGGTAAGGTTACGCGTGTATTATCGC
ATTAAACCACATACTCCACCCCGAGGGCTGACGGCTGACAGCTGACAGGG
TTTGCGCTCGTACTTAGAATTAACCAAACATCTCACGACACGAGCTGACG
ACGGCCATGCAACACCTGAAAGTTTCAAAATACATCATGTCTCCATAAAG
ATGACAAACTTACAAGAACTGGTAAGGTTACGCGTGTATTATCGCATTAA
ACCACATACTCCACCCCGAGGGCTGACGGCTGACAGCTGA
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