mRNA_H-paniculata_contig20007.5134.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20007.5134.1
Unique NamemRNA_H-paniculata_contig20007.5134.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig20007.5134.1 vs. uniprot
Match: A0A6H5KQK9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQK9_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 3.100e-15
Identity = 39/75 (52.00%), Postives = 51/75 (68.00%), Query Frame = 2 
Query:   17 NTDTVLIPGNLTGVNQPCDGMLNKEMKRGIRGKYTAWSVTTMTDPKTGELKPLRKGTVSMWVKEV-HGPTPERVR 238
            NT  + IPG LT + QP D MLNK+MKR +RGKYTA+S + + D ++G+LKP  +G VS W KE     TPE V+
Sbjct:  160 NTMVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSTSAVADARSGKLKPPERGVVSTWCKEAWESITPETVK 234
[Close]
BLAST of mRNA_H-paniculata_contig20007.5134.1 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 5.920e-15
Identity = 39/74 (52.70%), Postives = 51/74 (68.92%), Query Frame = 2 
Query:   17 NTDTVLIPGNLTGVNQPCDGMLNKEMKRGIRGKYTAWSVTTMTDPKTGELKPLRKGTVSMWVKEV-HGPTPERV 235
            NT  ++IPG LT + QP D MLNK+MKR +RGKYTA+S + + D ++G+LKP  +G VS W KE     TPE V
Sbjct:  279 NTIVIVIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSASAVADARSGKLKPPERGVVSTWCKEAWESITPETV 352
[Close]
BLAST of mRNA_H-paniculata_contig20007.5134.1 vs. uniprot
Match: A0A6H5JHT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT8_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 9.610e-15
Identity = 39/75 (52.00%), Postives = 51/75 (68.00%), Query Frame = 2 
Query:   17 NTDTVLIPGNLTGVNQPCDGMLNKEMKRGIRGKYTAWSVTTMTDPKTGELKPLRKGTVSMWVKEV-HGPTPERVR 238
            NT  + IPG LT + QP D MLNK+MKR +RGKYTA+S + + D ++G+LKP  +G VS W KE     TPE V+
Sbjct:  474 NTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSPSAVADARSGKLKPPERGVVSTWCKEAWESITPETVK 548
[Close]
BLAST of mRNA_H-paniculata_contig20007.5134.1 vs. uniprot
Match: A0A6H5KT06_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT06_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.590e-14
Identity = 38/75 (50.67%), Postives = 50/75 (66.67%), Query Frame = 2 
Query:   17 NTDTVLIPGNLTGVNQPCDGMLNKEMKRGIRGKYTAWSVTTMTDPKTGELKPLRKGTVSMWVKEV-HGPTPERVR 238
            NT  + IPG LT + QP D MLNK+MKR +RGKY A+S + + D ++G+LKP  +G VS W KE     TPE V+
Sbjct:  160 NTIVIFIPGGLTPLLQPLDCMLNKQMKRLLRGKYIAYSASAVADARSGKLKPPERGVVSTWCKEAWESITPETVK 234
[Close]
BLAST of mRNA_H-paniculata_contig20007.5134.1 vs. uniprot
Match: A0A6H5L4U1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4U1_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 2.390e-14
Identity = 37/75 (49.33%), Postives = 51/75 (68.00%), Query Frame = 2 
Query:   17 NTDTVLIPGNLTGVNQPCDGMLNKEMKRGIRGKYTAWSVTTMTDPKTGELKPLRKGTVSMWVKEV-HGPTPERVR 238
            NT  + IPG +T + QP D +LNK+MKR +RGKYTA+S + + D ++G+LKP  +G VS W KE     TPE V+
Sbjct:  140 NTIIIFIPGGMTLLLQPLDRLLNKQMKRLLRGKYTAYSASAVADARSGKLKPPERGVVSTWCKEAWESITPETVK 214
[Close]
BLAST of mRNA_H-paniculata_contig20007.5134.1 vs. uniprot
Match: A0A6H5JN68_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN68_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 2.430e-14
Identity = 38/75 (50.67%), Postives = 50/75 (66.67%), Query Frame = 2 
Query:   17 NTDTVLIPGNLTGVNQPCDGMLNKEMKRGIRGKYTAWSVTTMTDPKTGELKPLRKGTVSMWVKEV-HGPTPERVR 238
            NT  + IPG LT +  P D MLNK+MKR +RGKYTA+S + + D ++G+LKP  +G VS W KE     TPE V+
Sbjct:  453 NTIVIFIPGGLTPLFHPLDRMLNKQMKRLLRGKYTAYSASAVADARSGKLKPPERGVVSTWCKEAWESITPETVK 527
[Close]
BLAST of mRNA_H-paniculata_contig20007.5134.1 vs. uniprot
Match: A0A6H5K359_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K359_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 2.590e-14
Identity = 38/75 (50.67%), Postives = 49/75 (65.33%), Query Frame = 2 
Query:   17 NTDTVLIPGNLTGVNQPCDGMLNKEMKRGIRGKYTAWSVTTMTDPKTGELKPLRKGTVSMWVKEV-HGPTPERVR 238
            NT  + IPG LT + QP D MLNK+MKR +RGK+TA+S + + D + G+LKP  +G VS W KE     TPE  R
Sbjct:   49 NTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKHTAYSASAVADARPGKLKPPERGVVSTWCKEAWESITPETRR 123
[Close]
BLAST of mRNA_H-paniculata_contig20007.5134.1 vs. uniprot
Match: A0A6H5L467_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L467_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 2.700e-14
Identity = 37/75 (49.33%), Postives = 49/75 (65.33%), Query Frame = 2 
Query:   17 NTDTVLIPGNLTGVNQPCDGMLNKEMKRGIRGKYTAWSVTTMTDPKTGELKPLRKGTVSMWVKEV-HGPTPERVR 238
            NT  + IPG L  + QP D MLNK+MKR +RGKYTA+S + + D ++G+ KP  +G VS W KE     TPE V+
Sbjct:   63 NTIVIFIPGGLAPLLQPLDRMLNKQMKRLLRGKYTAYSASAVADARSGKQKPPERGVVSTWCKEEWESITPETVK 137
[Close]
BLAST of mRNA_H-paniculata_contig20007.5134.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 3.110e-14
Identity = 38/75 (50.67%), Postives = 50/75 (66.67%), Query Frame = 2 
Query:   17 NTDTVLIPGNLTGVNQPCDGMLNKEMKRGIRGKYTAWSVTTMTDPKTGELKPLRKGTVSMWVKEV-HGPTPERVR 238
            NT  + IPG LT + QP D MLNK+MKR +R KYTA+S + + D ++G+LKP  +G VS W KE     TPE V+
Sbjct:  279 NTIVIFIPGRLTPLLQPLDRMLNKQMKRLLRRKYTAYSASAVADARSGKLKPPERGVVSTWCKEAWESSTPETVK 353
[Close]
BLAST of mRNA_H-paniculata_contig20007.5134.1 vs. uniprot
Match: A0A6H5JBJ7_9PHAE (DDE-1 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBJ7_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 3.140e-14
Identity = 37/75 (49.33%), Postives = 50/75 (66.67%), Query Frame = 2 
Query:   17 NTDTVLIPGNLTGVNQPCDGMLNKEMKRGIRGKYTAWSVTTMTDPKTGELKPLRKGTVSMWVKEV-HGPTPERVR 238
            NT  + IPG  T + QP D MLNK+MKR +RGKYTA+S + + D ++G+LKP  +G VS W K+     TPE V+
Sbjct:   63 NTIVIFIPGGWTPLLQPLDRMLNKQMKRLLRGKYTAYSASAVADARSGKLKPPERGVVSTWCKKAWESITPETVK 137
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20007.5134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KQK9_9PHAE3.100e-1552.00DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JUK2_9PHAE5.920e-1552.70DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JHT8_9PHAE9.610e-1552.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KT06_9PHAE1.590e-1450.67DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5L4U1_9PHAE2.390e-1449.33DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JN68_9PHAE2.430e-1450.67DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K359_9PHAE2.590e-1450.67DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5L467_9PHAE2.700e-1449.33DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K6L9_9PHAE3.110e-1450.67DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JBJ7_9PHAE3.140e-1449.33DDE-1 domain-containing protein n=2 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20007contigH-paniculata_contig20007:4398..4723 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size326
Cds size165
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20007.5134.1prot_H-paniculata_contig20007.5134.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20007 4474..4638 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929510.6780918-UTR-H-paniculata_contig20007:4397..44731622929510.6780918-UTR-H-paniculata_contig20007:4397..4473Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20007 4398..4473 +
1691480892.4198017-UTR-H-paniculata_contig20007:4397..44731691480892.4198017-UTR-H-paniculata_contig20007:4397..4473Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20007 4398..4473 +
1622929510.702303-UTR-H-paniculata_contig20007:4638..47231622929510.702303-UTR-H-paniculata_contig20007:4638..4723Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20007 4639..4723 +
1691480892.452925-UTR-H-paniculata_contig20007:4638..47231691480892.452925-UTR-H-paniculata_contig20007:4638..4723Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20007 4639..4723 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929510.689945-CDS-H-paniculata_contig20007:4473..46381622929510.689945-CDS-H-paniculata_contig20007:4473..4638Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20007 4474..4638 +
1691480892.4289653-CDS-H-paniculata_contig20007:4473..46381691480892.4289653-CDS-H-paniculata_contig20007:4473..4638Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20007 4474..4638 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20007.5134.1

>prot_H-paniculata_contig20007.5134.1 ID=prot_H-paniculata_contig20007.5134.1|Name=mRNA_H-paniculata_contig20007.5134.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=55bp
MLNKEMKRGIRGKYTAWSVTTMTDPKTGELKPLRKGTVSMWVKEVHGPTP
ERVR*
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mRNA from alignment at H-paniculata_contig20007:4398..4723+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20007.5134.1 ID=mRNA_H-paniculata_contig20007.5134.1|Name=mRNA_H-paniculata_contig20007.5134.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=326bp|location=Sequence derived from alignment at H-paniculata_contig20007:4398..4723+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGATTCAAGACTATCAACACGGACACCGTCCTCATTCCTGGCAACCTAA
CAGGGGTTAACCAGCCTTGCGACGGCATGCTCAACAAAGAGATGAAGCGC
GGGATACGCGGGAAGTACACTGCTTGGAGCGTCACTACTATGACAGACCC
GAAAACGGGTGAACTCAAGCCTCTCAGGAAGGGCACAGTGTCAATGTGGG
TCAAGGAGGTCCACGGACCTACGCCCGAACGGGTAAGGTAGCTCGTGAAC
TGAGCATGACTGGAAGTCTAGTCAGAGGTCTTTTAGTGGGTGCAACCCTC
ACACTGCCTACTTGGTTCGGCCGAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig20007:4398..4723+

>mRNA_H-paniculata_contig20007.5134.1 ID=mRNA_H-paniculata_contig20007.5134.1|Name=mRNA_H-paniculata_contig20007.5134.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at H-paniculata_contig20007:4398..4723+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCAACAAAGAGATGAAGCGCGGGATACGCGGGAAGTACACTGCTTG
GAGCGTCACTACTATGACAGACCCGAAAACGGGTGAACTCAAGCCTCTCA
GGAAGGGCACAGTGTCAATGTGGGTCAAGGAGGTCCACGGACCTACGCCC
GAACGGGTAAGGTAGATGCTCAACAAAGAGATGAAGCGCGGGATACGCGG
GAAGTACACTGCTTGGAGCGTCACTACTATGACAGACCCGAAAACGGGTG
AACTCAAGCCTCTCAGGAAGGGCACAGTGTCAATGTGGGTCAAGGAGGTC
CACGGACCTACGCCCGAACGGGTAAGGTAG
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