prot_H-paniculata_contig20006.5133.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig20006.5133.1
Unique Nameprot_H-paniculata_contig20006.5133.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length273
Homology
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BLAST of mRNA_H-paniculata_contig20006.5133.1 vs. uniprot
Match: D8LMB1_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMB1_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 1.880e-5
Identity = 22/39 (56.41%), Postives = 29/39 (74.36%), Query Frame = 0 
Query:    1 MVDVRSKMCSHEGCSSQPSYGSAGTRKTEFCAQHAKAGM 39
            MVDV ++ C H GC+ +PS+G  G++K EFCAQHA  GM
Sbjct:    1 MVDVVNRRCRHPGCTKRPSFGQDGSKKQEFCAQHAHQGM 39
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20006.5133.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMB1_ECTSI1.880e-556.41EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20006contigH-paniculata_contig20006:1458..2276 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20006.5133.1mRNA_H-paniculata_contig20006.5133.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig20006 1375..2803 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig20006.5133.1 ID=prot_H-paniculata_contig20006.5133.1|Name=mRNA_H-paniculata_contig20006.5133.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=273bp
MVDVRSKMCSHEGCSSQPSYGSAGTRKTEFCAQHAKAGMVDVRSNMCSYE
GCSTRPSYGSAETRKAEFCARHAQDGMVDVRNKTCSHEDCSTYPSYGSAG
TRKTEFCARHAKAGMVNVRSKRCSHEGCPTQPSYGSAGTRRTEFCAQHAK
DGMAVDITRKSINRGHLSQKWSSSLQIKEEEPSGEADGHDEYSGTSEKVG
KRNRRTGRSHSDCSVVRENCIVKRARRDAGLAISEQPALSMPAAGMLSLD
DVTNVKTEVTVSRCSSSDQASQ*
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