mRNA_H-paniculata_contig20006.5133.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20006.5133.1
Unique NamemRNA_H-paniculata_contig20006.5133.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20006.5133.1 vs. uniprot
Match: D7FIE1_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIE1_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 8.280e-6
Identity = 24/37 (64.86%), Postives = 30/37 (81.08%), Query Frame = 3 
Query:    6 GCSTQPSYGSAGTRKAEFCAQHAKVGMVDVRSKMCSH 116
            GC+  PSYG AG++K EFCAQHAK GMV++RS+ C H
Sbjct:  113 GCTKWPSYGGAGSKKVEFCAQHAKKGMVNLRSRRCDH 149
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BLAST of mRNA_H-paniculata_contig20006.5133.1 vs. uniprot
Match: A0A6H5JGG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG2_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 2.750e-5
Identity = 23/38 (60.53%), Postives = 32/38 (84.21%), Query Frame = 3 
Query:    3 EGCSTQPSYGSAGTRKAEFCAQHAKVGMVDVRSKMCSH 116
            +GC+T+PSYG+AG +KAEFC+QH K GM+++ SK C H
Sbjct:   30 DGCTTRPSYGNAGCKKAEFCSQHKKPGMMNLVSKRCGH 67
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20006.5133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FIE1_ECTSI8.280e-664.86EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JGG2_9PHAE2.750e-560.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20006contigH-paniculata_contig20006:1375..2803 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1429
Cds size819
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20006.5133.1prot_H-paniculata_contig20006.5133.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20006 1458..2276 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929510.591063-UTR-H-paniculata_contig20006:1374..14571622929510.591063-UTR-H-paniculata_contig20006:1374..1457Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20006 1375..1457 +
1691480892.3882308-UTR-H-paniculata_contig20006:1374..14571691480892.3882308-UTR-H-paniculata_contig20006:1374..1457Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20006 1375..1457 +
1622929510.6392174-UTR-H-paniculata_contig20006:2276..28031622929510.6392174-UTR-H-paniculata_contig20006:2276..2803Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20006 2277..2803 +
1691480892.4100683-UTR-H-paniculata_contig20006:2276..28031691480892.4100683-UTR-H-paniculata_contig20006:2276..2803Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20006 2277..2803 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929510.6243699-CDS-H-paniculata_contig20006:1457..22761622929510.6243699-CDS-H-paniculata_contig20006:1457..2276Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20006 1458..2276 +
1691480892.397961-CDS-H-paniculata_contig20006:1457..22761691480892.397961-CDS-H-paniculata_contig20006:1457..2276Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20006 1458..2276 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20006.5133.1

>prot_H-paniculata_contig20006.5133.1 ID=prot_H-paniculata_contig20006.5133.1|Name=mRNA_H-paniculata_contig20006.5133.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=273bp
MVDVRSKMCSHEGCSSQPSYGSAGTRKTEFCAQHAKAGMVDVRSNMCSYE
GCSTRPSYGSAETRKAEFCARHAQDGMVDVRNKTCSHEDCSTYPSYGSAG
TRKTEFCARHAKAGMVNVRSKRCSHEGCPTQPSYGSAGTRRTEFCAQHAK
DGMAVDITRKSINRGHLSQKWSSSLQIKEEEPSGEADGHDEYSGTSEKVG
KRNRRTGRSHSDCSVVRENCIVKRARRDAGLAISEQPALSMPAAGMLSLD
DVTNVKTEVTVSRCSSSDQASQ*
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mRNA from alignment at H-paniculata_contig20006:1375..2803+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20006.5133.1 ID=mRNA_H-paniculata_contig20006.5133.1|Name=mRNA_H-paniculata_contig20006.5133.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1429bp|location=Sequence derived from alignment at H-paniculata_contig20006:1375..2803+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGAGGGCTGCTCTACACAGCCGTCGTACGGGTCGGCGGGCACGAGAAAG
GCAGAGTTCTGTGCGCAGCATGCCAAAGTCGGTATGGTAGACGTGCGGAG
TAAGATGTGCTCCCACGAAGGCTGCTCTTCACAGCCGTCGTACGGGTCGG
CGGGCACGAGAAAGACAGAGTTCTGTGCGCAGCATGCCAAAGCCGGCATG
GTGGACGTGCGGAGCAATATGTGCTCCTACGAGGGCTGCTCGACACGTCC
GTCTTACGGGTCGGCGGAGACGAGAAAGGCAGAGTTCTGTGCGCGGCATG
CCCAAGATGGGATGGTGGACGTGCGGAACAAGACATGCTCCCATGAGGAC
TGCTCGACATATCCGTCGTACGGGTCAGCGGGCACAAGAAAGACAGAGTT
CTGTGCGCGGCATGCCAAAGCCGGCATGGTAAACGTGCGGAGTAAGAGGT
GTTCTCACGAGGGCTGCCCTACACAGCCGTCGTACGGGTCGGCGGGCACG
AGAAGGACAGAATTCTGTGCGCAGCATGCCAAAGACGGGATGGCAGTCGA
CATAACCCGGAAGAGCATTAACCGCGGCCATCTTTCGCAGAAATGGTCAA
GTTCTTTACAGATAAAAGAAGAAGAGCCTTCGGGTGAGGCCGACGGTCAT
GACGAGTATTCGGGAACTTCCGAGAAGGTCGGAAAGCGAAACCGACGTAC
TGGGCGTTCACACAGCGATTGTTCTGTGGTACGCGAGAATTGCATAGTGA
AAAGGGCTCGTAGGGACGCGGGATTGGCAATCTCGGAGCAACCCGCTCTT
AGCATGCCCGCTGCTGGCATGTTGTCTCTCGACGACGTGACCAATGTCAA
AACGGAGGTGACTGTGTCGCGATGTTCGTCGTCTGACCAGGCCTCGCAGT
GAGTGGCAGAGGATCCAGATCATGGAGAAGGCGATTATGGGTGGCTTTCC
ATGCGCGAGTAATAGCCGCTCATGAATAATGGGAACCAATTTTTACGATG
GGAACAGAGTGCCATTGATTTTTCGTTGAAAACTTCCGAAATGGTGCGAC
CTGATGGTACAGTCGGCGCTGGTCATTGTGAATGAAGGTTTGTGGTGGAG
GTCAAAGACCGGTCCCTCTGGTACACGAGGTGGTGTCGATGTCAACGCTC
ATTTTGACCGTTCAAAAAGAAGAAAAAGGAAATCCTCGTCTTTGGGCCGA
AAGTAGTGGCCGAGTGGCCGCGAAGCAACACAGAAGACGCGATTGTCCTG
ACCTGCCCTCAGCGTTCACCACCGGCGTTCGTTCACAGTGATCAGCCCTG
AGTGTTGTACCATCATGTCGCGCCATATTCTAAGTTTTCAATATATAATC
AATATGACTTGGTTCGCATCGAATGACTTGGTGCCCAGTTTTCACGAACG
GCTCTAAATGATCATTTTTCGTCTCCTCC
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Coding sequence (CDS) from alignment at H-paniculata_contig20006:1375..2803+

>mRNA_H-paniculata_contig20006.5133.1 ID=mRNA_H-paniculata_contig20006.5133.1|Name=mRNA_H-paniculata_contig20006.5133.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1638bp|location=Sequence derived from alignment at H-paniculata_contig20006:1375..2803+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTAGACGTGCGGAGTAAGATGTGCTCCCACGAAGGCTGCTCTTCACA
GCCGTCGTACGGGTCGGCGGGCACGAGAAAGACAGAGTTCTGTGCGCAGC
ATGCCAAAGCCGGCATGGTGGACGTGCGGAGCAATATGTGCTCCTACGAG
GGCTGCTCGACACGTCCGTCTTACGGGTCGGCGGAGACGAGAAAGGCAGA
GTTCTGTGCGCGGCATGCCCAAGATGGGATGGTGGACGTGCGGAACAAGA
CATGCTCCCATGAGGACTGCTCGACATATCCGTCGTACGGGTCAGCGGGC
ACAAGAAAGACAGAGTTCTGTGCGCGGCATGCCAAAGCCGGCATGGTAAA
CGTGCGGAGTAAGAGGTGTTCTCACGAGGGCTGCCCTACACAGCCGTCGT
ACGGGTCGGCGGGCACGAGAAGGACAGAATTCTGTGCGCAGCATGCCAAA
GACGGGATGGCAGTCGACATAACCCGGAAGAGCATTAACCGCGGCCATCT
TTCGCAGAAATGGTCAAGTTCTTTACAGATAAAAGAAGAAGAGCCTTCGG
GTGAGGCCGACGGTCATGACGAGTATTCGGGAACTTCCGAGAAGGTCGGA
AAGCGAAACCGACGTACTGGGCGTTCACACAGCGATTGTTCTGTGGTACG
CGAGAATTGCATAGTGAAAAGGGCTCGTAGGGACGCGGGATTGGCAATCT
CGGAGCAACCCGCTCTTAGCATGCCCGCTGCTGGCATGTTGTCTCTCGAC
GACGTGACCAATGTCAAAACGGAGGTGACTGTGTCGCGATGTTCGTCGTC
TGACCAGGCCTCGCAGTGAATGGTAGACGTGCGGAGTAAGATGTGCTCCC
ACGAAGGCTGCTCTTCACAGCCGTCGTACGGGTCGGCGGGCACGAGAAAG
ACAGAGTTCTGTGCGCAGCATGCCAAAGCCGGCATGGTGGACGTGCGGAG
CAATATGTGCTCCTACGAGGGCTGCTCGACACGTCCGTCTTACGGGTCGG
CGGAGACGAGAAAGGCAGAGTTCTGTGCGCGGCATGCCCAAGATGGGATG
GTGGACGTGCGGAACAAGACATGCTCCCATGAGGACTGCTCGACATATCC
GTCGTACGGGTCAGCGGGCACAAGAAAGACAGAGTTCTGTGCGCGGCATG
CCAAAGCCGGCATGGTAAACGTGCGGAGTAAGAGGTGTTCTCACGAGGGC
TGCCCTACACAGCCGTCGTACGGGTCGGCGGGCACGAGAAGGACAGAATT
CTGTGCGCAGCATGCCAAAGACGGGATGGCAGTCGACATAACCCGGAAGA
GCATTAACCGCGGCCATCTTTCGCAGAAATGGTCAAGTTCTTTACAGATA
AAAGAAGAAGAGCCTTCGGGTGAGGCCGACGGTCATGACGAGTATTCGGG
AACTTCCGAGAAGGTCGGAAAGCGAAACCGACGTACTGGGCGTTCACACA
GCGATTGTTCTGTGGTACGCGAGAATTGCATAGTGAAAAGGGCTCGTAGG
GACGCGGGATTGGCAATCTCGGAGCAACCCGCTCTTAGCATGCCCGCTGC
TGGCATGTTGTCTCTCGACGACGTGACCAATGTCAAAACGGAGGTGACTG
TGTCGCGATGTTCGTCGTCTGACCAGGCCTCGCAGTGA
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