mRNA_H-paniculata_contig200.5131.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig200.5131.1 vs. uniprot
Match: A0A6H5K4Q6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4Q6_9PHAE) HSP 1 Score: 113 bits (283), Expect = 2.750e-22 Identity = 92/149 (61.74%), Postives = 97/149 (65.10%), Query Frame = 3
Query: 813 GVTKRATWADDTDSDVDEAPKANTAAAGGGKK--KTGMSWADSDTESDADVAAPPDKKLDAFGESESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPAITGEDATQMQNLSKKERKALKQKQLDDLDALLGEFGVD 1253
GV KRA WADDTDSDVDE AA G K KT SWADSDTESD D A PP KKLDAFGES XXXXXXXXXXXXXX A+TG+DAT++ NLSKKERKALKQK+LDDLDALLGEFGVD
Sbjct: 4 GVPKRAQWADDTDSDVDE-----VVAAAGNKSSGKTMTSWADSDTESDVDNAGPPPKKLDAFGESXXXXXXXXXXXXXXXXPPPNTGVVESVAVAAEEGPESV-------AVTGDDATKVLNLSKKERKALKQKELDDLDALLGEFGVD 140
BLAST of mRNA_H-paniculata_contig200.5131.1 vs. uniprot
Match: D7G999_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G999_ECTSI) HSP 1 Score: 99.4 bits (246), Expect = 1.830e-18 Identity = 80/129 (62.02%), Postives = 85/129 (65.89%), Query Frame = 3
Query: 906 KKTGMSWADSDTESDADVAAPPDKKLDAFGESESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPAITGEDATQMQNLSKKERKALKQKQLDDLDALLGEFGVDAGVEETVAPANGS 1292
KK SWADSDTESD D A PP KKLDAFGESE XXXXXXXXXXXXXXX A+TG+DAT++ NLSKKERKALKQK+LDDLDALLGEFGVD EE ANGS
Sbjct: 115 KKGMTSWADSDTESDVDNAGPPPKKLDAFGESEXXXXXXXXXXXXXXXXEPPANTGVVGSAAVAGEEEPE-----SAAVTGDDATKVLNLSKKERKALKQKELDDLDALLGEFGVDVAPEEPATEANGS 238 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig200.5131.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig200.5131.1 >prot_H-paniculata_contig200.5131.1 ID=prot_H-paniculata_contig200.5131.1|Name=mRNA_H-paniculata_contig200.5131.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=312bp MSGVTKRATWADDTDSDVDEAPKANTAAAGGGKKKTGMSWADSDTESDADback to top mRNA from alignment at H-paniculata_contig200:24926..42647- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig200.5131.1 ID=mRNA_H-paniculata_contig200.5131.1|Name=mRNA_H-paniculata_contig200.5131.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=17722bp|location=Sequence derived from alignment at H-paniculata_contig200:24926..42647- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig200:24926..42647- >mRNA_H-paniculata_contig200.5131.1 ID=mRNA_H-paniculata_contig200.5131.1|Name=mRNA_H-paniculata_contig200.5131.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1872bp|location=Sequence derived from alignment at H-paniculata_contig200:24926..42647- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |