mRNA_H-paniculata_contig108.513.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig108.513.1
Unique NamemRNA_H-paniculata_contig108.513.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig108.513.1 vs. uniprot
Match: A0A6H5LAN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAN5_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 3.840e-12
Identity = 35/68 (51.47%), Postives = 40/68 (58.82%), Query Frame = 1 
Query:   25 GFSERFEDERCAGGDLVDTWATRPTTAEQRPYRTGVGAGAVFDVGGQWLAAEREKNAERDDLRQREPW 228
            G   R+      G DLVDTW  RPT+AE  PY TG G+GAVFD GG+WLAAE+     R      EPW
Sbjct:  370 GVDNRYLATAGEGVDLVDTWGMRPTSAEHHPYGTGKGSGAVFDAGGEWLAAEKRGEMRRPV----EPW 433
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BLAST of mRNA_H-paniculata_contig108.513.1 vs. uniprot
Match: D7FVH9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVH9_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 3.840e-12
Identity = 34/68 (50.00%), Postives = 40/68 (58.82%), Query Frame = 1 
Query:   25 GFSERFEDERCAGGDLVDTWATRPTTAEQRPYRTGVGAGAVFDVGGQWLAAEREKNAERDDLRQREPW 228
            G  +R+      G DLVDTW  RP +AE  PY TG G+GAVFD GG+WLAAE+     R      EPW
Sbjct:  421 GVDDRYLATAGEGADLVDTWGMRPASAEHHPYGTGKGSGAVFDAGGEWLAAEKRGEMRRPV----EPW 484
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig108.513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LAN5_9PHAE3.840e-1251.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVH9_ECTSI3.840e-1250.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig108contigH-paniculata_contig108:51560..52406 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.6
Seed ortholog evalue1.8e-10
Seed eggNOG ortholog2880.D7FVH9
Preferred nameCFAP221
Hectar predicted targeting categoryother localisation
GOsGO:0003341,GO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0032838,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044458,GO:0044463,GO:0044464,GO:0044782,GO:0060271,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
EggNOG free text desc.cilium movement
EggNOG OGs28KJC@1,2QT0T@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size233
Cds size231
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928784.363009-CDS-H-paniculata_contig108:51559..516311622928784.363009-CDS-H-paniculata_contig108:51559..51631Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig108 51560..51631 +
1691480618.5419874-CDS-H-paniculata_contig108:51559..516311691480618.5419874-CDS-H-paniculata_contig108:51559..51631Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig108 51560..51631 +
1622928784.38367-CDS-H-paniculata_contig108:52247..524061622928784.38367-CDS-H-paniculata_contig108:52247..52406Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig108 52248..52406 +
1691480618.5569515-CDS-H-paniculata_contig108:52247..524061691480618.5569515-CDS-H-paniculata_contig108:52247..52406Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig108 52248..52406 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig108.513.1prot_H-paniculata_contig108.513.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig108 51560..52406 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig108.513.1

>prot_H-paniculata_contig108.513.1 ID=prot_H-paniculata_contig108.513.1|Name=mRNA_H-paniculata_contig108.513.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
WDCSDQGQGFSERFEDERCAGGDLVDTWATRPTTAEQRPYRTGVGAGAVF
DVGGQWLAAEREKNAERDDLRQREPW*
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mRNA from alignment at H-paniculata_contig108:51560..52406+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig108.513.1 ID=mRNA_H-paniculata_contig108.513.1|Name=mRNA_H-paniculata_contig108.513.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=847bp|location=Sequence derived from alignment at H-paniculata_contig108:51560..52406+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGGACTGCAGTGATCAGGGGCAGGGATTCTCTGAAAGGTTCGAGGATGA
GAGGTGTGCCGGGGGAGATTTGGTGAGCCCAATTGGACATAGCAAGTACG
CAATTTGTTCCTGGCCGGTCGGAAAACAGTCGGGGGGGTGTGTCGATTAT
TCCACATTTCGCTGAATGTACACCGGTAGACTGCGTGTCCAATCGTCCGT
TATCGTAGTCTGCTGCCAGCTCGTTCCGGAGGAACTCGTTGCAGCTTGCT
CGGCAATACCATATCCTCATGTTTGTAGGTAATTGATTTTGTTTTTAGTA
AAACTCAACCGTTGTTGATTTTTTTTTTAACCCCCGGAAGGCTAAGGCAA
AAACCTCTATCCGATGCTTCCATACAGAAGTAAACCGTTGTTGATTATAT
AAAATGTGACAAAACATAGCAAAAAGGAAATGTATATCCATGTCGCTCTG
ATGGCGAAACGCAAATACGTCGGACGGCGGTATCAACTGCGTGTGTTTTC
CCGGGTTAACCTCCGAGCGCTAATAACAAGCGCTTCAGTCGATGCTCTAT
CGGCCTGTCCTATGCTTTATCCCCCACTTGGGTTGGAGTTCAGCGTAGGG
TTCTGAGTTAGCATTCGTTTGTTCGCCGGTACCTTTACCGCTGCAATGTG
TGGTCAGAGTCTCCCCGCTGTCGTTTGTATCCTTCAAGGTGGACACGTGG
GCGACGCGGCCAACAACGGCAGAGCAACGACCATATCGGACAGGGGTAGG
AGCGGGAGCTGTTTTCGATGTGGGAGGCCAATGGCTGGCGGCGGAGCGAG
AGAAGAATGCAGAGAGGGACGACCTGCGACAGCGCGAACCCTGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig108:51560..52406+

>mRNA_H-paniculata_contig108.513.1 ID=mRNA_H-paniculata_contig108.513.1|Name=mRNA_H-paniculata_contig108.513.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig108:51560..52406+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGGACTGCAGTGATCAGGGGCAGGGATTCTCTGAAAGGTTCGAGGATGA
GAGGTGTGCCGGGGGAGATTTGTGGGACTGCAGTGATCAGGGGCAGGGAT
TCTCTGAAAGGTTCGAGGATGAGAGGTGTGCCGGGGGAGATTTGGTGGAC
ACGTGGGCGACGCGGCCAACAACGGCAGAGCAACGACCATATCGGACAGG
GGTAGGAGCGGGAGCTGTTTTCGATGTGGGAGGCCAATGGCTGGCGGCGG
AGCGAGAGAAGAATGCAGAGAGGGACGACCTGCGACAGCGCGAACCCTGG
TGAGTGGACACGTGGGCGACGCGGCCAACAACGGCAGAGCAACGACCATA
TCGGACAGGGGTAGGAGCGGGAGCTGTTTTCGATGTGGGAGGCCAATGGC
TGGCGGCGGAGCGAGAGAAGAATGCAGAGAGGGACGACCTGCGACAGCGC
GAACCCTGGTGA
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