mRNA_H-paniculata_contig200.5130.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig200.5130.1
Unique NamemRNA_H-paniculata_contig200.5130.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig200.5130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig200contigH-paniculata_contig200:19655..22355 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1124
Cds size1038
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig200.5130.1prot_H-paniculata_contig200.5130.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig200 19655..22270 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929509.8826597-CDS-H-paniculata_contig200:19654..205161622929509.8826597-CDS-H-paniculata_contig200:19654..20516Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig200 19655..20516 -
1691480891.963169-CDS-H-paniculata_contig200:19654..205161691480891.963169-CDS-H-paniculata_contig200:19654..20516Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig200 19655..20516 -
1622929509.8937032-CDS-H-paniculata_contig200:22094..222701622929509.8937032-CDS-H-paniculata_contig200:22094..22270Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig200 22095..22270 -
1691480891.9763885-CDS-H-paniculata_contig200:22094..222701691480891.9763885-CDS-H-paniculata_contig200:22094..22270Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig200 22095..22270 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929509.9077177-UTR-H-paniculata_contig200:22270..223551622929509.9077177-UTR-H-paniculata_contig200:22270..22355Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig200 22271..22355 -
1691480891.9873161-UTR-H-paniculata_contig200:22270..223551691480891.9873161-UTR-H-paniculata_contig200:22270..22355Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig200 22271..22355 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig200.5130.1

>prot_H-paniculata_contig200.5130.1 ID=prot_H-paniculata_contig200.5130.1|Name=mRNA_H-paniculata_contig200.5130.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=346bp
MDIRSFFSPKSGGGGGTSSKPKSSGGSASASKKKDARKGKSSPEKSPPGS
NNKAVGKQKMEITSKKKRGAGNDDDDNVVEEVVPTSALKKKKTQGNKKGD
ARSSSGDGVVEIVPSPKHERLKSSRSTTKKRKVEDEDETMAMDKDEDAAG
ARSGQEGGRRGSDKAMPSPCATASKKASTRDRAESPQRSSLRGKRSRGSG
KKVLYCEDSDEDGGGEDDDEDAYNEDADGEEDDDDHDDADKEEEDFKNGK
RSSSLSRKRKSTTSSGSGGGGGGSGGAKTKRRSTDGTDSSSATATLKKSC
PAKNNVVELANTSSDEQEEVKPPPRKKPEKAKAPTEKDSTSAKKSG
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mRNA from alignment at H-paniculata_contig200:19655..22355-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig200.5130.1 ID=mRNA_H-paniculata_contig200.5130.1|Name=mRNA_H-paniculata_contig200.5130.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2701bp|location=Sequence derived from alignment at H-paniculata_contig200:19655..22355- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTACATAGACACCGCACCTGTGCATGCTGACCCAGCTGCTAGGGTCTGTG
TAAGATTCTAGAGGCGGAAATACGGCCCTCGAAGCATGGATATCAGGTCG
TTCTTCTCGCCAAAGTCTGGCGGTGGAGGGGGTACATCGTCCAAGCCGAA
ATCGAGCGGCGGGAGCGCGAGTGCAAGTAAGAAAAAGGATGCTCGCAAAG
GCAAAAGCTCTCCCGAAAAGTCACCACCTGGTTCAAACAATAAGGCCGTC
GGAAAACAAAAGTGAGTTTTCGAAAAACATCCCCATGCTTAGCCAGCTTG
ATGGGATACGTTTTTGCAGGTCGATGGATTATGTAGGCACGCCCCCCTCT
TTCTCTAGACGGTACCGCCTGTATGTTATGATAGTCTGCGATAACACTAC
AGAGATACTTCATTGCGACTTAATGCAAAGTTTGAAGTTTCGCGAATTCG
CTGTGTACGCCAAGCTTTGGCATGTGTGCGATGGGAGCTGTACTGAGTGT
GCTCTTTCACAGGCAAGCGTCCTTCGATGTGGATGGTACATGCAACATGG
CACATGCTTCTGTTGAAAACTAGAGGAGAGGAAGCTTGTTGTGCCATGAT
GCTAAATGCTATGCACCATCAGCGTTTATCGTTCGTTCCCTAAAGGTGTT
TCTTTGACAAAGCAGAGCATGAAGAAAAGAGGCATCATGATTTTTTTTCG
TTCGAAATTTGAATTTAACTGACTGTAACTATTTACGGTACACTGGCGCT
CTCTACCCGCACACATCGTCTCTGACTCTGAGGAAGCACCTGACACATAC
ATCCGAACTGGAATACAATAGTGACATGTCTTTCTCCCGCTCTTCTGCAT
CGGTAGGTATTGTCATAGATACCGCGTGTATATTCGTGAATCGTGAGCCA
ATAAATTTTCCGCACAGCTTGGGAATGCACAGACAACTAGCTCAATTTGG
CGGTGGCGAGTTGATGTGTTTTTTGCAATCGCTTCGAGGGTCACGTACAG
ACCCGTTGGTCATAACCTTCGAAATCATGGTAGGTTTCGGTTTCGCTCTC
GGCGATGGGGGGAGTACACTCTCATATTTCACGTTGATCAAAGCAAGGTG
CAATAAAAGATCAAACGGCAATGTAGACTGTTTTCGAGTACTTGTGGATG
ACCCTTCTGGTTCTGGTGTCCATTTTTGGTGCCCCCACCAATCCTTGGTT
GCAACCTCTGGACACGGTGTGTGATATCCTGTTCAACCATATATTTCAAT
CGTTCATTCGATTGGCGGTCAACTTGTTGACCATTTATTGTTAATAGGTT
ACTAATCGTGGTACCTCACAAGTTATTTTTTTTCAAGTTGTCATTACTGT
ACTGTTGTGTGCCATATGTTGAAACGTTTCATAGCACAGAAAAAGTGCAA
CATGGGCTCGCCGATAAGAAATCCCCCAAGAAGAAATTGAGGCTCACCTT
TCACTAGCTCATTAGAAATTGGACCCAAGAAATGTGGCTCAAAATGTGGC
CCCATACTAAATTACTACAGAGGTGAAAAGTATTGCTGCTTCATGATTCT
CGCCAAGGTAAGGTTTTTGAGCCTCACCCGAAATAAGAGATTCTTACTAT
TGGGCCCGTGTTGTATCTAAACACGATGTTGTCCTCGTGAGCGGCCGTGT
AGACCCCCTCCCGCGGTTCCCCACTTTCTCCATTGTATTCCATCTTTTCT
CGGTACTGTCCCCCCTTTTTGGATTGTGTTGAAAGAATAACGCCCTTGGG
ACTTCCTTGATAAACCTATTCCTCATCTTCGTTGGCCCTCACCTCCCGTC
CGTCATCTTAACGACACGCTGCGGGTCGTCCACACTTAGGATGGAAATCA
CTTCTAAGAAAAAGCGAGGCGCGGGTAATGACGATGATGATAACGTAGTC
GAAGAAGTAGTCCCGACGTCGGCACTGAAAAAAAAGAAGACACAGGGAAA
TAAGAAAGGCGATGCTCGCAGCAGCAGTGGCGATGGAGTGGTTGAGATTG
TCCCCAGTCCTAAGCACGAAAGGCTCAAGTCCTCGCGGAGCACGACAAAA
AAACGGAAGGTCGAGGATGAGGACGAAACGATGGCGATGGACAAAGACGA
GGATGCTGCGGGCGCGAGGTCTGGTCAGGAAGGCGGGAGGAGAGGAAGTG
ACAAAGCGATGCCGTCCCCTTGTGCTACTGCAAGTAAAAAGGCATCGACA
AGAGACCGGGCCGAGAGTCCACAGAGATCTTCCTTGCGTGGCAAGCGTAG
CAGAGGTTCTGGTAAGAAAGTGCTCTATTGTGAGGACAGTGATGAGGATG
GCGGCGGCGAAGATGATGATGAGGATGCTTACAATGAGGATGCTGATGGG
GAGGAGGATGATGATGATCACGACGATGCAGATAAAGAGGAGGAGGATTT
CAAGAATGGTAAGAGAAGCTCGTCGTTGTCCCGAAAGCGCAAATCAACAA
CCTCTTCAGGCAGCGGCGGCGGCGGTGGCGGTAGCGGCGGCGCCAAGACT
AAGAGAAGATCTACCGATGGCACCGATAGTAGCAGTGCTACTGCTACTTT
GAAGAAATCATGTCCGGCGAAAAACAACGTGGTCGAACTCGCCAACACTT
CAAGCGACGAGCAGGAAGAAGTGAAGCCTCCACCTCGTAAGAAACCCGAA
AAGGCTAAGGCGCCGACAGAGAAGGACTCCACCAGCGCTAAGAAGTCTGG
A
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Coding sequence (CDS) from alignment at H-paniculata_contig200:19655..22355-

>mRNA_H-paniculata_contig200.5130.1 ID=mRNA_H-paniculata_contig200.5130.1|Name=mRNA_H-paniculata_contig200.5130.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2076bp|location=Sequence derived from alignment at H-paniculata_contig200:19655..22355- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATATCAGGTCGTTCTTCTCGCCAAAGTCTGGCGGTGGAGGGGGTAC
ATCGTCCAAGCCGAAATCGAGCGGCGGGAGCGCGAGTGCAAGTAAGAAAA
AGGATGCTCGCAAAGGCAAAAGCTCTCCCGAAAAGTCACCACCTGGTTCA
AACAATAAGGCCGTCGGAAAACAAAAATGGATATCAGGTCGTTCTTCTCG
CCAAAGTCTGGCGGTGGAGGGGGTACATCGTCCAAGCCGAAATCGAGCGG
CGGGAGCGCGAGTGCAAGTAAGAAAAAGGATGCTCGCAAAGGCAAAAGCT
CTCCCGAAAAGTCACCACCTGGTTCAAACAATAAGGCCGTCGGAAAACAA
AAGATGGAAATCACTTCTAAGAAAAAGCGAGGCGCGGGTAATGACGATGA
TGATAACGTAGTCGAAGAAGTAGTCCCGACGTCGGCACTGAAAAAAAAGA
AGACACAGGGAAATAAGAAAGGCGATGCTCGCAGCAGCAGTGGCGATGGA
GTGGTTGAGATTGTCCCCAGTCCTAAGCACGAAAGGCTCAAGTCCTCGCG
GAGCACGACAAAAAAACGGAAGGTCGAGGATGAGGACGAAACGATGGCGA
TGGACAAAGACGAGGATGCTGCGGGCGCGAGGTCTGGTCAGGAAGGCGGG
AGGAGAGGAAGTGACAAAGCGATGCCGTCCCCTTGTGCTACTGCAAGTAA
AAAGGCATCGACAAGAGACCGGGCCGAGAGTCCACAGAGATCTTCCTTGC
GTGGCAAGCGTAGCAGAGGTTCTGGTAAGAAAGTGCTCTATTGTGAGGAC
AGTGATGAGGATGGCGGCGGCGAAGATGATGATGAGGATGCTTACAATGA
GGATGCTGATGGGGAGGAGGATGATGATGATCACGACGATGCAGATAAAG
AGGAGGAGGATTTCAAGAATGGTAAGAGAAGCTCGTCGTTGTCCCGAAAG
CGCAAATCAACAACCTCTTCAGGCAGCGGCGGCGGCGGTGGCGGTAGCGG
CGGCGCCAAGACTAAGAGAAGATCTACCGATGGCACCGATAGTAGCAGTG
CTACTGCTACTTTGAAGAAATCATGTCCGGCGAAAAACAACGTGGTCGAA
CTCGCCAACACTTCAAGCGACGAGCAGGAAGAAGTGAAGCCTCCACCTCG
TAAGAAACCCGAAAAGGCTAAGGCGCCGACAGAGAAGGACTCCACCAGCG
CTAAGAAGTCTGGAGATGGAAATCACTTCTAAGAAAAAGCGAGGCGCGGG
TAATGACGATGATGATAACGTAGTCGAAGAAGTAGTCCCGACGTCGGCAC
TGAAAAAAAAGAAGACACAGGGAAATAAGAAAGGCGATGCTCGCAGCAGC
AGTGGCGATGGAGTGGTTGAGATTGTCCCCAGTCCTAAGCACGAAAGGCT
CAAGTCCTCGCGGAGCACGACAAAAAAACGGAAGGTCGAGGATGAGGACG
AAACGATGGCGATGGACAAAGACGAGGATGCTGCGGGCGCGAGGTCTGGT
CAGGAAGGCGGGAGGAGAGGAAGTGACAAAGCGATGCCGTCCCCTTGTGC
TACTGCAAGTAAAAAGGCATCGACAAGAGACCGGGCCGAGAGTCCACAGA
GATCTTCCTTGCGTGGCAAGCGTAGCAGAGGTTCTGGTAAGAAAGTGCTC
TATTGTGAGGACAGTGATGAGGATGGCGGCGGCGAAGATGATGATGAGGA
TGCTTACAATGAGGATGCTGATGGGGAGGAGGATGATGATGATCACGACG
ATGCAGATAAAGAGGAGGAGGATTTCAAGAATGGTAAGAGAAGCTCGTCG
TTGTCCCGAAAGCGCAAATCAACAACCTCTTCAGGCAGCGGCGGCGGCGG
TGGCGGTAGCGGCGGCGCCAAGACTAAGAGAAGATCTACCGATGGCACCG
ATAGTAGCAGTGCTACTGCTACTTTGAAGAAATCATGTCCGGCGAAAAAC
AACGTGGTCGAACTCGCCAACACTTCAAGCGACGAGCAGGAAGAAGTGAA
GCCTCCACCTCGTAAGAAACCCGAAAAGGCTAAGGCGCCGACAGAGAAGG
ACTCCACCAGCGCTAAGAAGTCTGGA
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