mRNA_H-paniculata_contig20.5124.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20.5124.1
Unique NamemRNA_H-paniculata_contig20.5124.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20.5124.1 vs. uniprot
Match: D7G599_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G599_ECTSI)

HSP 1 Score: 301 bits (772), Expect = 2.970e-89
Identity = 147/210 (70.00%), Postives = 171/210 (81.43%), Query Frame = 1 
Query:  610 RDQDMFVPSATFAGGKQGYVFKRGDCGVGYYKDGYVDRPKRGSQTPTRRPWNAGPGDDAVRRGPIGPILKPFKNIPTLKNHTEKQGNAAEESDMRPFMARMVAQRNSRGFQSTLLDRERVLDAHILSLLEEFNDPTFFKKKHGYNVHGQMLGRDGKMIVKPHVAKTEEEKAKLSWYRKAYEDQLGEHLPSKRLGDSIEARREAYAYSRYF 1239
            +D+ +FV S+ F G K GYVFK GD G+G+Y DGYVDR  R  ++ + RPWNAGPG+ A +RGP+GP  KPFK I  +   T+K+  AAEE+D RPFMARMVAQRNSRGFQS L +RERVLD HIL LLE+F+DP FFKKKHGYNVHGQMLG+DGKMIVK    KTEEEKA+L WYRK YED+LG+HLPSKRLGDSIEARREAYAYSR+F
Sbjct:  173 KDEGVFVSSSCFTGAKDGYVFKTGDKGLGFYVDGYVDRQARRKRSLSHRPWNAGPGEQATKRGPLGPAPKPFKKI--VPYRTQKEKRAAEENDTRPFMARMVAQRNSRGFQSNLFERERVLDKHILYLLEKFSDPAFFKKKHGYNVHGQMLGKDGKMIVKVTPEKTEEEKARLPWYRKVYEDRLGKHLPSKRLGDSIEARREAYAYSRHF 380
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BLAST of mRNA_H-paniculata_contig20.5124.1 vs. uniprot
Match: A0A6H5JWU4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWU4_9PHAE)

HSP 1 Score: 224 bits (572), Expect = 2.360e-61
Identity = 106/160 (66.25%), Postives = 129/160 (80.62%), Query Frame = 1 
Query:  610 RDQDMFVPSATFAGGKQGYVFKRGDCGVGYYKDGYVDRPKRGSQTPTRRPWNAGPGDDAVRRGPIGPILKPFKNIPTLKNHTEKQGNAAEESDMRPFMARMVAQRNSRGFQSTLLDRERVLDAHILSLLEEFNDPTFFKKKHGYNVHGQMLGRDGKMIVK 1089
            +D+++F+ S+ F G K GYVFK GD G+G+Y DGYVDR  R  ++ + RPWNAGPG++A +RGP+GP  KPFK I  +   T+K+  AAEE+D RPFMARMVAQRNSRGFQS L +RERVLD HIL LLE+F+DP FFKKKHGYNVHGQMLG+DGKMIVK
Sbjct:  172 KDEEVFISSSCFTGAKDGYVFKTGDKGLGFYVDGYVDRQVRRKRSLSHRPWNAGPGEEATKRGPLGPAPKPFKKI--VPYRTQKEKRAAEENDTRPFMARMVAQRNSRGFQSNLFERERVLDKHILYLLEKFSDPAFFKKKHGYNVHGQMLGKDGKMIVK 329
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20.5124.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G599_ECTSI2.970e-8970.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JWU4_9PHAE2.360e-6166.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20contigH-paniculata_contig20:35510..37141 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_006740.1
Exons3
Model size1244
Cds size1242
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20.5124.1prot_H-paniculata_contig20.5124.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20 35510..37141 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929509.2673402-CDS-H-paniculata_contig20:35509..356621622929509.2673402-CDS-H-paniculata_contig20:35509..35662Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20 35510..35662 -
1691480891.6214912-CDS-H-paniculata_contig20:35509..356621691480891.6214912-CDS-H-paniculata_contig20:35509..35662Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20 35510..35662 -
1622929509.285659-CDS-H-paniculata_contig20:35851..360501622929509.285659-CDS-H-paniculata_contig20:35851..36050Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20 35852..36050 -
1691480891.6316607-CDS-H-paniculata_contig20:35851..360501691480891.6316607-CDS-H-paniculata_contig20:35851..36050Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20 35852..36050 -
1622929509.2985375-CDS-H-paniculata_contig20:36251..371411622929509.2985375-CDS-H-paniculata_contig20:36251..37141Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20 36252..37141 -
1691480891.6407423-CDS-H-paniculata_contig20:36251..371411691480891.6407423-CDS-H-paniculata_contig20:36251..37141Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20 36252..37141 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20.5124.1

>prot_H-paniculata_contig20.5124.1 ID=prot_H-paniculata_contig20.5124.1|Name=mRNA_H-paniculata_contig20.5124.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=414bp
MSTLTAGVTKEIAIVDTVKDENGVVLQDTDVPGTPLACNEQGKPVMLESG
IDGVGQPSRARGTNMPPVEQEMAPSTAVLARTEVAHDGASNCELVNEQDG
SKNKLAPALPAVGSYATESTRLTTVELRVDGTLDGTKQLMVTESAMNQVG
GAISKVGISSCNPVKRTKHDGEEIASEDKRLHSMRTTNSCISEEEGTCKT
NSQRDQDMFVPSATFAGGKQGYVFKRGDCGVGYYKDGYVDRPKRGSQTPT
RRPWNAGPGDDAVRRGPIGPILKPFKNIPTLKNHTEKQGNAAEESDMRPF
MARMVAQRNSRGFQSTLLDRERVLDAHILSLLEEFNDPTFFKKKHGYNVH
GQMLGRDGKMIVKPHVAKTEEEKAKLSWYRKAYEDQLGEHLPSKRLGDSI
EARREAYAYSRYFI
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mRNA from alignment at H-paniculata_contig20:35510..37141-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20.5124.1 ID=mRNA_H-paniculata_contig20.5124.1|Name=mRNA_H-paniculata_contig20.5124.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1632bp|location=Sequence derived from alignment at H-paniculata_contig20:35510..37141- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGACGTTGACTGCAGGAGTTACGAAGGAAATTGCAATAGTTGACAC
AGTTAAGGATGAAAATGGCGTTGTCCTCCAGGACACAGATGTTCCTGGAA
CACCACTAGCTTGCAATGAACAAGGGAAGCCTGTCATGTTAGAATCAGGC
ATCGATGGCGTAGGCCAGCCTTCAAGAGCTAGGGGAACGAACATGCCGCC
TGTCGAACAAGAGATGGCACCAAGTACTGCAGTACTCGCTAGAACAGAGG
TTGCACACGATGGGGCATCGAATTGCGAGCTTGTTAACGAACAGGATGGA
AGTAAAAACAAGCTGGCACCAGCCTTGCCTGCGGTAGGTTCATATGCAAC
AGAGTCCACCAGACTGACCACTGTAGAGTTGAGAGTTGATGGAACACTTG
ATGGGACGAAGCAGTTGATGGTAACTGAGAGTGCTATGAACCAAGTTGGT
GGTGCAATTTCTAAGGTCGGCATTTCATCGTGCAACCCTGTGAAGCGAAC
AAAACACGACGGCGAGGAAATCGCCAGCGAGGATAAGAGGTTGCATTCGA
TGAGAACAACTAATTCTTGCATCTCAGAGGAGGAAGGTACTTGTAAGACG
AACAGCCAGCGTGATCAAGACATGTTCGTACCTTCTGCGACCTTCGCCGG
CGGTAAACAAGGGTACGTATTCAAGCGTGGCGATTGTGGGGTTGGATACT
ACAAGGATGGCTATGTCGACCGACCAAAAAGAGGATCACAGACACCCACC
CGCCGACCCTGGAACGCTGGACCTGGTGACGATGCTGTCAGGAGGGGTCC
CATCGGACCGATACTCAAGCCGTTCAAAAATATCCCTACACTGAAAAATC
ACACGGAAAAACAAGGAAACGCGGCCGAGGAGTCCGACATGTGAGCTCCA
TGAGCTCTCACTGTAGTATCCCCACGGCGATTTTACATGGTGGTGATGGG
TCAACTCGTTATGCGGTAAATGCTTCAGTACCCCGTACTGTGTTCGTTCG
GCGTTAACTCACATCCTGCTCGTCTTAGCTTGCCCTATGCATTTACTATT
TGACGCGTCGGCCTCTTGGTGCCTGCCCGTGTCTTTCACAGGCGACCATT
TATGGCAAGAATGGTGGCACAGAGAAATTCTAGGGGGTTTCAATCCACCC
TTCTGGATCGAGAGCGTGTGCTTGATGCACACATCCTCTCGCTCCTTGAG
GAATTCAACGACCCTACGTTTTTCAAGAAAAAACACGGCTATAATGTACA
CGGGCAGATGCTGGGAAGGGATGGAAAGATGATTGTCAAGGTGCGTGTAG
GAGTGCGTACAACCTAGCTATCTCGACAACGAAAGCATTGCTTTTTCGCT
CATGATTTGTCCTTGTTGTGTATTGCTTCGGGATTTGCTGGTGACTGGAG
CCTGGAATCACACTGTGTTGATGGAACTTCCTCTTGTGCTGACGGGTAGC
TATTCATATCCACGCCACCGCACCTTTAGCCTCATGTGGCAAAGACGGAG
GAGGAGAAAGCCAAACTTTCCTGGTATCGAAAGGCGTACGAGGATCAGCT
GGGGGAGCACCTGCCTAGCAAACGCCTTGGAGATAGTATCGAAGCAAGGA
GAGAGGCCTATGCATACTCTAGGTATTTCATC
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Coding sequence (CDS) from alignment at H-paniculata_contig20:35510..37141-

>mRNA_H-paniculata_contig20.5124.1 ID=mRNA_H-paniculata_contig20.5124.1|Name=mRNA_H-paniculata_contig20.5124.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2484bp|location=Sequence derived from alignment at H-paniculata_contig20:35510..37141- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGACGTTGACTGCAGGAGTTACGAAGGAAATTGCAATAGTTGACAC
AGTTAAGGATGAAAATGGCGTTGTCCTCCAGGACACAGATGTTCCTGGAA
CACCACTAGCTTGCAATGAACAAGGGAAGCCTGTCATGTTAGAATCAGGC
ATCGATGGCGTAGGCCAGCCTTCAAGAGCTAGGGGAACGAACATGCCGCC
TGTCGAACAAGAGATGGCACCAAGTACTGCAGTACTCGCTAGAACAGAGG
TTGCACACGATGGGGCATCGAATTGCGAGCTTGTTAACGAACAGGATGGA
AGTAAAAACAAGCTGGCACCAGCCTTGCCTGCGGTAGGTTCATATGCAAC
AGAGTCCACCAGACTGACCACTGTAGAGTTGAGAGTTGATGGAACACTTG
ATGGGACGAAGCAGTTGATGGTAACTGAGAGTGCTATGAACCAAGTTGGT
GGTGCAATTTCTAAGGTCGGCATTTCATCGTGCAACCCTGTGAAGCGAAC
AAAACACGACGGCGAGGAAATCGCCAGCGAGGATAAGAGGTTGCATTCGA
TGAGAACAACTAATTCTTGCATCTCAGAGGAGGAAGGTACTTGTAAGACG
AACAGCCAGCGTGATCAAGACATGTTCGTACCTTCTGCGACCTTCGCCGG
CGGTAAACAAGGGTACGTATTCAAGCGTGGCGATTGTGGGGTTGGATACT
ACAAGGATGGCTATGTCGACCGACCAAAAAGAGGATCACAGACACCCACC
CGCCGACCCTGGAACGCTGGACCTGGTGACGATGCTGTCAGGAGGGGTCC
CATCGGACCGATACTCAAGCCGTTCAAAAATATCCCTACACTGAAAAATC
ACACGGAAAAACAAGGAAACGCGGCCGAGGAGTCCGACATATGTCGACGT
TGACTGCAGGAGTTACGAAGGAAATTGCAATAGTTGACACAGTTAAGGAT
GAAAATGGCGTTGTCCTCCAGGACACAGATGTTCCTGGAACACCACTAGC
TTGCAATGAACAAGGGAAGCCTGTCATGTTAGAATCAGGCATCGATGGCG
TAGGCCAGCCTTCAAGAGCTAGGGGAACGAACATGCCGCCTGTCGAACAA
GAGATGGCACCAAGTACTGCAGTACTCGCTAGAACAGAGGTTGCACACGA
TGGGGCATCGAATTGCGAGCTTGTTAACGAACAGGATGGAAGTAAAAACA
AGCTGGCACCAGCCTTGCCTGCGGTAGGTTCATATGCAACAGAGTCCACC
AGACTGACCACTGTAGAGTTGAGAGTTGATGGAACACTTGATGGGACGAA
GCAGTTGATGGTAACTGAGAGTGCTATGAACCAAGTTGGTGGTGCAATTT
CTAAGGTCGGCATTTCATCGTGCAACCCTGTGAAGCGAACAAAACACGAC
GGCGAGGAAATCGCCAGCGAGGATAAGAGGTTGCATTCGATGAGAACAAC
TAATTCTTGCATCTCAGAGGAGGAAGGTACTTGTAAGACGAACAGCCAGC
GTGATCAAGACATGTTCGTACCTTCTGCGACCTTCGCCGGCGGTAAACAA
GGGTACGTATTCAAGCGTGGCGATTGTGGGGTTGGATACTACAAGGATGG
CTATGTCGACCGACCAAAAAGAGGATCACAGACACCCACCCGCCGACCCT
GGAACGCTGGACCTGGTGACGATGCTGTCAGGAGGGGTCCCATCGGACCG
ATACTCAAGCCGTTCAAAAATATCCCTACACTGAAAAATCACACGGAAAA
ACAAGGAAACGCGGCCGAGGAGTCCGACATGCGACCATTTATGGCAAGAA
TGGTGGCACAGAGAAATTCTAGGGGGTTTCAATCCACCCTTCTGGATCGA
GAGCGTGTGCTTGATGCACACATCCTCTCGCTCCTTGAGGAATTCAACGA
CCCTACGTTTTTCAAGAAAAAACACGGCTATAATGTACACGGGCAGATGC
TGGGAAGGGATGGAAAGATGATTGTCAAGGCGACCATTTATGGCAAGAAT
GGTGGCACAGAGAAATTCTAGGGGGTTTCAATCCACCCTTCTGGATCGAG
AGCGTGTGCTTGATGCACACATCCTCTCGCTCCTTGAGGAATTCAACGAC
CCTACGTTTTTCAAGAAAAAACACGGCTATAATGTACACGGGCAGATGCT
GGGAAGGGATGGAAAGATGATTGTCAAGCCTCATGTGGCAAAGACGGAGG
AGGAGAAAGCCAAACTTTCCTGGTATCGAAAGGCGTACGAGGATCAGCTG
GGGGAGCACCTGCCTAGCAAACGCCTTGGAGATAGTATCGAAGCAAGGAG
AGAGGCCTATGCATACTCTAGGTATTTCATCCCTCATGTGGCAAAGACGG
AGGAGGAGAAAGCCAAACTTTCCTGGTATCGAAAGGCGTACGAGGATCAG
CTGGGGGAGCACCTGCCTAGCAAACGCCTTGGAGATAGTATCGAAGCAAG
GAGAGAGGCCTATGCATACTCTAGGTATTTCATC
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