mRNA_H-paniculata_contig20.5123.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20.5123.1
Unique NamemRNA_H-paniculata_contig20.5123.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20.5123.1 vs. uniprot
Match: D7G599_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G599_ECTSI)

HSP 1 Score: 205 bits (522), Expect = 3.590e-56
Identity = 105/170 (61.76%), Postives = 137/170 (80.59%), Query Frame = 2 
Query:  209 QGVTKLEFVTEDYNYPGAYDTDGKVILEKGAPVSNELHQTEEQKERACSFRFKAIQRYRAAHEDIVNAISKKDKALQKMFKKTDPSVLQEIAEEAVQSSGMELYRQKETKGALDDAPKAGSFRTIAGELTESPEQLRDTFSNLLKSQIKNKDKALMKEVAAFAEEDADQV 718
            +G TKLEF+TEDY+YPGAY+TDGKVILEKGAPVSNELH+T+ Q ERAC++R+KAI+RYRAAH DI +AI+KKDKALQK+ KKTDP++L EI+EEAV S+GM +YRQ +  G  + +    S   +  +  E PEQLR  F++ LK+QIK KDKAL+KE+AA  E++A+Q+
Sbjct:  400 KGQTKLEFITEDYHYPGAYNTDGKVILEKGAPVSNELHRTDAQNERACTYRYKAIRRYRAAHSDIASAIAKKDKALQKVLKKTDPAILVEISEEAVTSTGMGIYRQTKRAGGRNGSATGESSAVL--QPAERPEQLRQKFAHSLKAQIKGKDKALLKEIAALEEDEAEQM 567
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BLAST of mRNA_H-paniculata_contig20.5123.1 vs. uniprot
Match: A0A6H5JWU4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWU4_9PHAE)

HSP 1 Score: 203 bits (517), Expect = 1.840e-55
Identity = 103/169 (60.95%), Postives = 136/169 (80.47%), Query Frame = 2 
Query:  212 GVTKLEFVTEDYNYPGAYDTDGKVILEKGAPVSNELHQTEEQKERACSFRFKAIQRYRAAHEDIVNAISKKDKALQKMFKKTDPSVLQEIAEEAVQSSGMELYRQKETKGALDDAPKAGSFRTIAGELTESPEQLRDTFSNLLKSQIKNKDKALMKEVAAFAEEDADQV 718
            G TKLEF+TEDY+YPGAY+TDGKVILEKGAPVSNELH+T+ Q ERAC++R+KAI+RYRAAH DI +AI+KKDKALQK+ KKTDP++L EI+EEAV S+G+ +YRQ +  G  + +    S   +  +  E PEQLR  F++ LKSQ+K+KDKAL+KE+AA  E++ +Q+
Sbjct:  349 GQTKLEFITEDYHYPGAYNTDGKVILEKGAPVSNELHRTDAQNERACTYRYKAIRRYRAAHSDIASAIAKKDKALQKVLKKTDPAILVEISEEAVTSTGLGIYRQTKRAGGRNGSATGASSAVL--QPGERPEQLRQKFAHSLKSQMKSKDKALLKEIAALEEDETEQI 515
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BLAST of mRNA_H-paniculata_contig20.5123.1 vs. uniprot
Match: A0A835YZN9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZN9_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 5.100e-11
Identity = 43/95 (45.26%), Postives = 59/95 (62.11%), Query Frame = 2 
Query:  257 GAYDTDGKVILEKGAPVSNELHQTEEQKERACSFRFKAIQRYRAAHEDIVNAISKKDKALQKMFKKTDPSVLQEIAEEAVQSSGMELYRQKETKG 541
            G Y  DGK+IL +G      LH  ++   RA  + +KA QR++AAHEDI NAIS K   + K+ +KT+  +LQ IAE+AV SS +  +RQK   G
Sbjct:  250 GGYGIDGKIILPEGEERDKRLHLDDKALARATPYVYKATQRFKAAHEDIANAISAKSLEVSKLLRKTNWKLLQSIAEQAV-SSSLAQHRQKRLTG 343
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20.5123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G599_ECTSI3.590e-5661.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JWU4_9PHAE1.840e-5560.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YZN9_9STRA5.100e-1145.26Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20contigH-paniculata_contig20:33774..35664 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size908
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20.5123.1prot_H-paniculata_contig20.5123.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20 33919..34514 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929509.090199-UTR-H-paniculata_contig20:33773..339181622929509.090199-UTR-H-paniculata_contig20:33773..33918Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20 33774..33918 -
1691480891.5657537-UTR-H-paniculata_contig20:33773..339181691480891.5657537-UTR-H-paniculata_contig20:33773..33918Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20 33774..33918 -
1622929509.141164-UTR-H-paniculata_contig20:34514..346021622929509.141164-UTR-H-paniculata_contig20:34514..34602Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20 34515..34602 -
1691480891.5942066-UTR-H-paniculata_contig20:34514..346021691480891.5942066-UTR-H-paniculata_contig20:34514..34602Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20 34515..34602 -
1622929509.1576672-UTR-H-paniculata_contig20:34983..351631622929509.1576672-UTR-H-paniculata_contig20:34983..35163Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20 34984..35163 -
1691480891.6040962-UTR-H-paniculata_contig20:34983..351631691480891.6040962-UTR-H-paniculata_contig20:34983..35163Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20 34984..35163 -
1622929509.1969988-UTR-H-paniculata_contig20:35490..356641622929509.1969988-UTR-H-paniculata_contig20:35490..35664Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20 35491..35664 -
1691480891.6123047-UTR-H-paniculata_contig20:35490..356641691480891.6123047-UTR-H-paniculata_contig20:35490..35664Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20 35491..35664 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929509.104118-CDS-H-paniculata_contig20:33918..340381622929509.104118-CDS-H-paniculata_contig20:33918..34038Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20 33919..34038 -
1691480891.5745404-CDS-H-paniculata_contig20:33918..340381691480891.5745404-CDS-H-paniculata_contig20:33918..34038Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20 33919..34038 -
1622929509.1194792-CDS-H-paniculata_contig20:34313..345141622929509.1194792-CDS-H-paniculata_contig20:34313..34514Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20 34314..34514 -
1691480891.5850468-CDS-H-paniculata_contig20:34313..345141691480891.5850468-CDS-H-paniculata_contig20:34313..34514Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20 34314..34514 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20.5123.1

>prot_H-paniculata_contig20.5123.1 ID=prot_H-paniculata_contig20.5123.1|Name=mRNA_H-paniculata_contig20.5123.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
MFKKTDPSVLQEIAEEAVQSSGMELYRQKETKGALDDAPKAGSFRTIAGE
LTESPEQLRDTFSNLLKSQIKNKDKALMKEVAAFAEEDADQVRHQRANVF
KGDHKG*
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mRNA from alignment at H-paniculata_contig20:33774..35664-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20.5123.1 ID=mRNA_H-paniculata_contig20.5123.1|Name=mRNA_H-paniculata_contig20.5123.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1891bp|location=Sequence derived from alignment at H-paniculata_contig20:33774..35664- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCCTCATGTGGCAAAGACGGAGGAGGAGAAAGCCAAACTTTCCTGGTAT
CGAAAGGCGTACGAGGATCAGCTGGGGGAGCACCTGCCTAGCAAACGCCT
TGGAGATAGTATCGAAGCAAGGAGAGAGGCCTATGCATACTCTAGGTATT
TCATCGCTGAGTTGGACGAACGGCAACAAGAACTAAACATGTCTCTCAAC
GATGCGTTGAAGGTAAGGAATTTGTTGGGATTTAAGACAGCGGGGGTTTG
AACTGTGTTTTCTCGACGTGCTTAAGCCCGATATGCACCCTGCCCAAAAA
CGTTAGTGCAGCACCTTTGTTGCGATTGGTCCGAAGCTCTCCAGACCTGT
CGACTTACAAAAACAATTGTGTGCGCTGGAATGCACTGTACACCGCGTCC
GTAGGAATGTTACCATTTCTATTACTACCTGTTGCAATACATCTTGAGGT
GCCGTGCTTGTCACGCACGTAGATTCTAGCACACAAATCTGCACGTGATT
TGTCTCCTTTATCTATATTGGCTTGCTACTGCTCTCAGGGAGTGACAAAA
CTTGAGTTCGTCACGGAAGACTATAACTACCCTGGAGCTTACGACACAGA
CGGCAAGGTCATCCTAGAAAAAGGGGCACCGGTGTCAAACGAATTGCACC
AGACTGAGGAACAGAAGGAAAGGGCCTGCTCGTGAGTCATCCTGTTGAGA
CTAACTGGACTGTGGTAAGGACTCAAAGATCTACTATCTTAGCGAGACGC
GGATTCGTGGAGGTAGGGCAAACGCTCTATGTAGAGTTCTGGGAGAACGA
ATGTTTCAAGCGCCATGCTGGATTAGCAGTGACACGCTACTGTTACCGTG
GCTGCAAGGCAATCGCGCAATGCAGTAGCACAATACCAGAATGATTGTTA
AATAGACAATGCGTGGCCAACGCGTAGAAACGCGTTATCACAGTTTGCTG
TTGCCAACTCTCTAGGTGAGTGATCATTCACACATGCGTGCGACGCGTAT
GTAGAAATTTATTGCTCATAAGTTCTGTTCTTATGCTTGCCCTTGCCTCG
TTTATATCGAAGATTTCGATTCAAGGCCATCCAGCGGTATCGTGCGGCAC
ATGAGGACATCGTGAATGCTATCTCCAAGAAAGACAAAGCGCTACAGAAA
ATGTTCAAGAAAACGGATCCTTCCGTTCTCCAGGAGATCGCTGAGGAGGC
TGTTCAAAGCTCGGGCATGGAATTGTACCGACAGAAAGAGACGAAAGGAG
CCCTCGACGATGCCCCCAAAGCAGGCAGCTTTAGGACAATCGCAGGCGAA
CTGACCGAAAGCCCGGAACAGCTCCGTGATACATTTTCTAATTTACTGAA
GGTGCTGCAGTCAAAGTGATAGATCGAGACTGGGTACTGCTCCATTAGAT
GCTGCTGGCAATTCATATTCGTATCTGCACTAGGTGGCTCCGGAGTTGTG
GGGACGCTGATGCTTGGGATGCAATCTGGTCGAGTGGAATCAAATTTCCA
AACGCTGCAACAACAGAGCCGGCAACGACTTATTCAGATCGAAATGTACG
CTGCTATTCGCTTGCAAACGGTGTTTGCGAAAAGACGTTGAGCCTTTTCC
CTCGACTCTACATTAATTTCCCGCAGTCTCAAATCAAGAACAAGGACAAG
GCTCTCATGAAAGAGGTTGCCGCCTTTGCTGAGGAGGATGCTGACCAGGT
GCGCCATCAACGCGCCAATGTATTCAAGGGCGACCACAAAGGGTGACTGG
TTAGTGGGGGTTTCATATCGTCGTAAGAAGATACAGGTGGACCACCATGG
CGTGGCACCACCCTGAGCCAACCTGTGTGATTCATTTGATCGATTCATGC
AGATGCCATGTTGGCTGCTTCCATCGTGACATTATCCTGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig20:33774..35664-

>mRNA_H-paniculata_contig20.5123.1 ID=mRNA_H-paniculata_contig20.5123.1|Name=mRNA_H-paniculata_contig20.5123.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig20:33774..35664- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCAAGAAAACGGATCCTTCCGTTCTCCAGGAGATCGCTGAGGAGGC
TGTTCAAAGCTCGGGCATGGAATTGTACCGACAGAAAGAGACGAAAGGAG
CCCTCGACGATGCCCCCAAAGCAGGCAGCTTTAGGACAATCGCAGGCGAA
CTGACCGAAAGCCCGGAACAGCTCCGTGATACATTTTCTAATTTACTGAA
GATGTTCAAGAAAACGGATCCTTCCGTTCTCCAGGAGATCGCTGAGGAGG
CTGTTCAAAGCTCGGGCATGGAATTGTACCGACAGAAAGAGACGAAAGGA
GCCCTCGACGATGCCCCCAAAGCAGGCAGCTTTAGGACAATCGCAGGCGA
ACTGACCGAAAGCCCGGAACAGCTCCGTGATACATTTTCTAATTTACTGA
AGTCTCAAATCAAGAACAAGGACAAGGCTCTCATGAAAGAGGTTGCCGCC
TTTGCTGAGGAGGATGCTGACCAGGTGCGCCATCAACGCGCCAATGTATT
CAAGGGCGACCACAAAGGGTGATCTCAAATCAAGAACAAGGACAAGGCTC
TCATGAAAGAGGTTGCCGCCTTTGCTGAGGAGGATGCTGACCAGGTGCGC
CATCAACGCGCCAATGTATTCAAGGGCGACCACAAAGGGTGA
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