mRNA_H-paniculata_contig20.5121.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig20.5121.1 vs. uniprot
Match: A0A6H5JWU4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWU4_9PHAE) HSP 1 Score: 162 bits (411), Expect = 2.690e-37 Identity = 182/592 (30.74%), Postives = 258/592 (43.58%), Query Frame = 2
Query: 233 FGKGVDISADSWREDQANLKNMQRRRKELVAEIEADRRKIVCPWRPGGLHIAQKPWRPFVPRDHRPPVPSASE-------------SQAASGREAAN-ETQGFGTQGT*RAGSAHPCGATTGHA---ATQCLFHLQQLSLSTRIYSGISQKSS----------AAAWGTSSR*LFTSR*PRRTLVDKSRRRIQARLGRDNGIGECKRSLAQVDCEVWQRDSTAAFCRTGSARAHFHVQAATVKRL*HQEPW*--RGCLQRI--------------YSCNCKRLGRHFTLVERKGL*CHRW---GSTWKLRRITEPSAPRRYRRH---GIVFSAMRTLRHGV--QESSLAIEAGTTSYFSALSTQSS-NDPKSLKSPRYSPQNIPGRTRE*ITRQGRSRKHVRLDPRRTKRGQKECTLCCS*RARRPPFNKQLAAGQPKKKSISDRSRRERIWDPGSAFYAEGASRHHHSDPRVGGLGGGSSDKFRIYCGKACDRGEGRRE----RRQRRRRVCAEVEL-----PVDMDWTKVDTKLLSKAAGGMQMQLEGKFFAVIADDEGGAKLDECFREAREILDAAGNLLGWPYILRER 1825
FGKG + +SWR+D L M+RRRKEL+AE ADRRK+VCPWRPGG HIAQ+PW+PF+PRDHRPPV SASE S A GR + +G G + R P G + + L + T ++S S S+ +A T +R ++ P TL + + G+G +R+ ++ C T++ G A H AA + + P C R+ S N R + + H G T R+ PS+ Y+R ++ T R G + S+ A GTT ++ DP + P + + G+ + +G + L+ E +L S ++R K++ G SDRSRRER WDPGS FYAEGAS+H P S RI + RG R+E +R+ RR + + PVDMDW KVD L + ++ L+GKFFAV+ DDE L ECF+EA+E++++A LLG P RER
Sbjct: 519 FGKGAGVLPNSWRQDPEGLNRMERRRKELIAENAADRRKVVCPWRPGGKHIAQEPWKPFIPRDHRPPVRSASEGKAETHGGSLGVSSAAQEGRRSVPIHEKGNGKKEAERRPRTAPAHRRKGFMDAISPRARRILAAQAPGTPLHSVFSTYSNDPFPLETRQRPSAQSTPARTEYSGNRPSPTLTTEPCTDTLFQTSGRIGLGTQQRAWVEISCSP-----TSSQTLRGGFVARPHSAAAKISKKLRTPPRRPATACGTRVPRESTDNAVAASNVSSTNQAREHEQDHRSDEQSRDLHVQSGPGVTVLWARLCSPSSDLVYKRSVWPEAPAASRPTRRRGKPRKTSATAPVNGTTVAEGEHEWDATPGDPSTGPGPIVAGSSGGGKPK---LPRGTTDTGGPLED-------MENSLYAS-SSQRVNHRKRIFRG------YSDRSRRERTWDPGSEFYAEGASKHSMVRP--------SPCTGRINWNRRGGRGNPRQEDDTTKRKHRRDKRHQSRISGNDDPVDMDWEKVDIARLINGSKEIEKVLDGKFFAVVTDDESPVHLGECFQEAQELVESASVLLGCPENERER 1080
BLAST of mRNA_H-paniculata_contig20.5121.1 vs. uniprot
Match: D7G599_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G599_ECTSI) HSP 1 Score: 125 bits (314), Expect = 1.290e-25 Identity = 157/528 (29.73%), Postives = 228/528 (43.18%), Query Frame = 2
Query: 221 MVEGFGKGVDISADSWREDQANLKNMQRRRKELVAEIEADRRKIVCPWRPGGLHIAQKPWRPFVPRDHRPPVPSASESQAAS------GREAANE--------TQGFGTQGT*RAGSAHPCGATTGHA---ATQCLFHLQQLSLSTRIYSGISQKSS----------AAAWGTSSR*LFTSR*PRRTLVDKSRRRIQARLGRDNGIGECKRSLAQVDCEVWQ----RDSTAAFCRTGSARAHFHVQA-------ATVKRL*HQEPW*RGCLQRIYSCNCKRLGRHFTLVERKGL*CHRW---GSTWKLRRITEPSAPRRYRRHGIVFSAMRTLRHGVQESSLAIEAGTTSYFSALSTQSSNDPKSLKSPRYSPQNIPGRTRE*ITRQGRSRKHVRLDPRRTKRG----QKECTLCCS*RARRPPFNKQLAAGQPKKKSISDRSRRERIWDPGSAFYAEGASRHH--HSDPRVGGLGGGSSDKFRIYCGKACDRGEGRRERRQRRR------RVCAEVELPVDMDWTKV 1645
M+ FGKG ++ +SWR+D LK M+RRRKEL+AE ADRRK+VCPWRPGG HIAQ+PW+PF+PRDHRPPV SASE +A + AA E +G G +G R P G + + L + T ++S S S+ +A T +R +++ P T + R + G+G +R+ A++ C R A R+ +A ++Q A R+ + + S N R + + H G T R+ PS+ Y+R V+ + + T+ +A T++ + + +P P PG + G+ + L T G E +L S ++R K++ G SDRSRRER WDPGS FYAEGAS+H P G + G RI GK R E +R+ RR R+ + ++PVDMDW KV
Sbjct: 567 MMGDFGKGTEVLPNSWRQDPEGLKRMERRRKELIAENAADRRKVVCPWRPGGKHIAQEPWKPFIPRDHRPPVRSASEGKAETHGGSLGATSAAQEGRRGVPIHEKGNGKKGAERRPRTAPAHRRKGFMDAISPRARRILAAQAPGTPLHSVFSTYSNDPFPLETRQRPSAQSTPARTEYSANRPWPTPTTEPRTDTLFQTSGRVGLGTQQRAWAEISCSPTSSQTLRGDFVARPRSAAAEISKNLQTPPRRPATACGTRVPRESTANAVAASNVSSANQAREHEQGHRSDEQSRDLHVQNGPGVTVLWARLCSPSSDLVYKRS--VWPEASAASRQTRPRGKPRKTSATAPVNAT-TEAEGEHEWDATP-GDPSTGPGPIDAGDSGGGKPK----LPRGTTDTGGPLEDMENSLYAS-SSQRVNHRKRVFRG------YSDRSRRERTWDPGSEFYAEGASKHSMVRPSPCTGRINGN-----RIG-GKGDPRQEDDTTKRKHRRDKRHQSRISGD-DVPVDMDWEKV 1072
BLAST of mRNA_H-paniculata_contig20.5121.1 vs. uniprot
Match: A0A835YZN9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZN9_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 3.060e-11 Identity = 40/73 (54.79%), Postives = 48/73 (65.75%), Query Frame = 2
Query: 239 KGVDISADSWREDQANLKNMQRRRKELVAEIEADRRKIVCPWRPGGLHIAQKPWRPFVPRDHRPPVPSASESQ 457
+ VD WRED+ NLK M+ R+KEL + E KIVCPWRPGG HIA+ PW PF P+ RPP P+ S SQ
Sbjct: 588 RDVDHLPGGWREDRQNLKAMKARQKELRRDKEDVAEKIVCPWRPGGQHIAKGPWEPFYPKRRRPP-PNRSHSQ 659 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20.5121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig20.5121.1 >prot_H-paniculata_contig20.5121.1 ID=prot_H-paniculata_contig20.5121.1|Name=mRNA_H-paniculata_contig20.5121.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=393bp MKHRVLVRKELSVRARRILAAQQPGTPLHSAFSTYSNYPYLLASTQGSHKback to top mRNA from alignment at H-paniculata_contig20:28883..33752- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig20.5121.1 ID=mRNA_H-paniculata_contig20.5121.1|Name=mRNA_H-paniculata_contig20.5121.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4870bp|location=Sequence derived from alignment at H-paniculata_contig20:28883..33752- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig20:28883..33752- >mRNA_H-paniculata_contig20.5121.1 ID=mRNA_H-paniculata_contig20.5121.1|Name=mRNA_H-paniculata_contig20.5121.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2358bp|location=Sequence derived from alignment at H-paniculata_contig20:28883..33752- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |