mRNA_H-paniculata_contig20.5125.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20.5125.1
Unique NamemRNA_H-paniculata_contig20.5125.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20.5125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20contigH-paniculata_contig20:37112..37908 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons1
Model size797
Cds size591
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20.5125.1prot_H-paniculata_contig20.5125.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20 37140..37730 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929508.0936291-UTR-H-paniculata_contig20:37111..371391622929508.0936291-UTR-H-paniculata_contig20:37111..37139Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20 37112..37139 +
1691480891.1222832-UTR-H-paniculata_contig20:37111..371391691480891.1222832-UTR-H-paniculata_contig20:37111..37139Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20 37112..37139 +
1622929508.1274452-UTR-H-paniculata_contig20:37730..379081622929508.1274452-UTR-H-paniculata_contig20:37730..37908Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20 37731..37908 +
1691480891.1491814-UTR-H-paniculata_contig20:37730..379081691480891.1491814-UTR-H-paniculata_contig20:37730..37908Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig20 37731..37908 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929508.111979-CDS-H-paniculata_contig20:37139..377301622929508.111979-CDS-H-paniculata_contig20:37139..37730Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20 37140..37730 +
1691480891.1375046-CDS-H-paniculata_contig20:37139..377301691480891.1375046-CDS-H-paniculata_contig20:37139..37730Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20 37140..37730 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20.5125.1

>prot_H-paniculata_contig20.5125.1 ID=prot_H-paniculata_contig20.5125.1|Name=mRNA_H-paniculata_contig20.5125.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=197bp
MFSPCACSVFATTVLSLCCTHSVPAVTVLLREISSVTDSTSCASTVRSGS
ADRRARSMPVTAEGSIGSVKASCVPLISPPRTTPLCPPSTLSSIAIISRV
SLVVNVGVSWDCKCSVCTRDTFSGASCVSTIAVLPCVSTSPCLTTTGTFD
GLSKLSATLFCRILPSTGKRIIEFRATLPLVGASGGARHVDAPVPP*
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mRNA from alignment at H-paniculata_contig20:37112..37908+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20.5125.1 ID=mRNA_H-paniculata_contig20.5125.1|Name=mRNA_H-paniculata_contig20.5125.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=797bp|location=Sequence derived from alignment at H-paniculata_contig20:37112..37908+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCGTAACTCCTGCAGTCAACGTCGACATGTTTTCGCCATGCGCATGTT
CCGTCTTTGCCACCACAGTTCTTTCGCTATGTTGCACACACTCTGTTCCA
GCGGTCACTGTACTGCTTCGTGAAATTTCTTCTGTGACCGACAGCACGTC
TTGTGCCTCCACGGTTCGCTCTGGCTCGGCAGACCGGCGTGCGCGATCGA
TGCCTGTTACTGCAGAAGGCTCCATTGGTTCGGTGAAAGCTAGTTGTGTC
CCGCTGATATCTCCACCCCGGACAACCCCGCTGTGTCCACCGTCAACTCT
GTCATCTATTGCGATCATCTCCAGAGTGAGTCTTGTTGTCAACGTCGGCG
TATCTTGGGACTGCAAATGTTCCGTGTGCACCAGAGATACGTTTTCAGGT
GCAAGCTGTGTTTCGACGATCGCCGTGCTGCCTTGCGTGTCCACTTCGCC
TTGTTTGACCACTACGGGTACGTTCGACGGCTTGTCAAAGCTATCCGCCA
CCTTATTTTGCCGAATTTTACCGTCCACGGGCAAGAGAATCATCGAGTTC
CGGGCGACGCTGCCACTCGTCGGTGCCTCTGGCGGTGCCCGCCATGTTGA
TGCTCCGGTGCCGCCATAGCCGACAACAGCCGACGAATCGGACGCGGAAT
GCATAATAACAGGATATGACCTGTTCGACGCGAATACCACCAGTATGTTG
CTGAGATCATGACATTCCCAAGGATTATCCTCCCAAAGGAATCAAAGTAC
CCAACAGGGTACCCAGCTCTAGCCCACTATTGTTCACTGTCCTTATC
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Coding sequence (CDS) from alignment at H-paniculata_contig20:37112..37908+

>mRNA_H-paniculata_contig20.5125.1 ID=mRNA_H-paniculata_contig20.5125.1|Name=mRNA_H-paniculata_contig20.5125.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1182bp|location=Sequence derived from alignment at H-paniculata_contig20:37112..37908+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTTCGCCATGCGCATGTTCCGTCTTTGCCACCACAGTTCTTTCGCT
ATGTTGCACACACTCTGTTCCAGCGGTCACTGTACTGCTTCGTGAAATTT
CTTCTGTGACCGACAGCACGTCTTGTGCCTCCACGGTTCGCTCTGGCTCG
GCAGACCGGCGTGCGCGATCGATGCCTGTTACTGCAGAAGGCTCCATTGG
TTCGGTGAAAGCTAGTTGTGTCCCGCTGATATCTCCACCCCGGACAACCC
CGCTGTGTCCACCGTCAACTCTGTCATCTATTGCGATCATCTCCAGAGTG
AGTCTTGTTGTCAACGTCGGCGTATCTTGGGACTGCAAATGTTCCGTGTG
CACCAGAGATACGTTTTCAGGTGCAAGCTGTGTTTCGACGATCGCCGTGC
TGCCTTGCGTGTCCACTTCGCCTTGTTTGACCACTACGGGTACGTTCGAC
GGCTTGTCAAAGCTATCCGCCACCTTATTTTGCCGAATTTTACCGTCCAC
GGGCAAGAGAATCATCGAGTTCCGGGCGACGCTGCCACTCGTCGGTGCCT
CTGGCGGTGCCCGCCATGTTGATGCTCCGGTGCCGCCATAGATGTTTTCG
CCATGCGCATGTTCCGTCTTTGCCACCACAGTTCTTTCGCTATGTTGCAC
ACACTCTGTTCCAGCGGTCACTGTACTGCTTCGTGAAATTTCTTCTGTGA
CCGACAGCACGTCTTGTGCCTCCACGGTTCGCTCTGGCTCGGCAGACCGG
CGTGCGCGATCGATGCCTGTTACTGCAGAAGGCTCCATTGGTTCGGTGAA
AGCTAGTTGTGTCCCGCTGATATCTCCACCCCGGACAACCCCGCTGTGTC
CACCGTCAACTCTGTCATCTATTGCGATCATCTCCAGAGTGAGTCTTGTT
GTCAACGTCGGCGTATCTTGGGACTGCAAATGTTCCGTGTGCACCAGAGA
TACGTTTTCAGGTGCAAGCTGTGTTTCGACGATCGCCGTGCTGCCTTGCG
TGTCCACTTCGCCTTGTTTGACCACTACGGGTACGTTCGACGGCTTGTCA
AAGCTATCCGCCACCTTATTTTGCCGAATTTTACCGTCCACGGGCAAGAG
AATCATCGAGTTCCGGGCGACGCTGCCACTCGTCGGTGCCTCTGGCGGTG
CCCGCCATGTTGATGCTCCGGTGCCGCCATAG
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