prot_H-paniculata_contig2.5113.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2.5113.1
Unique Nameprot_H-paniculata_contig2.5113.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length97
Homology
BLAST of mRNA_H-paniculata_contig2.5113.1 vs. uniprot
Match: A0A5S6R3V4_TRIMR (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6R3V4_TRIMR)

HSP 1 Score: 131 bits (330), Expect = 5.360e-38
Identity = 62/94 (65.96%), Postives = 76/94 (80.85%), Query Frame = 0
Query:    1 MAASLAELQGKLVSVITGDGRQILGNLKGYDQTINLVLEGCSERIYSQARGVEQVQLGLYICRGDNIAVIGEFDEEADATKDLSRVRADPLKPV 94
            MAA + + + KLVSVITGDGR ILGNLKG+DQTINLVL+   ER+YS+ +G+E+VQLGLYI RGDN+A+IGE DEE D   DL+  RADPL P+
Sbjct:    1 MAAGIDQYKDKLVSVITGDGRHILGNLKGFDQTINLVLDEACERVYSKEQGIEEVQLGLYIIRGDNVAIIGEMDEEMDRRLDLTNTRADPLMPI 94          
BLAST of mRNA_H-paniculata_contig2.5113.1 vs. uniprot
Match: A0A835ZJ72_9STRA (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ72_9STRA)

HSP 1 Score: 127 bits (320), Expect = 1.740e-36
Identity = 60/96 (62.50%), Postives = 74/96 (77.08%), Query Frame = 0
Query:    1 MAASLAELQGKLVSVITGDGRQILGNLKGYDQTINLVLEGCSERIYSQARGVEQVQLGLYICRGDNIAVIGEFDEEADATKDLSRVRADPLKPVTH 96
            MA +L+ELQGK VS+IT DGR I+GN +G+D TIN++L+ C ER+YS    VE V LGLYI RGDNIAVIGE DE AD  +DLS +RA P+KP+ H
Sbjct:    1 MATTLSELQGKPVSIITNDGRNIVGNFRGHDHTINVILDSCHERVYSTTAAVEVVPLGLYIVRGDNIAVIGELDEAADTERDLSSLRAVPIKPLAH 96          
BLAST of mRNA_H-paniculata_contig2.5113.1 vs. uniprot
Match: A0A7I8VGN1_9ANNE (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8VGN1_9ANNE)

HSP 1 Score: 125 bits (314), Expect = 1.430e-35
Identity = 60/96 (62.50%), Postives = 75/96 (78.12%), Query Frame = 0
Query:    1 MAASLAELQGKLVSVITGDGRQILGNLKGYDQTINLVLEGCSERIYSQARGVEQVQLGLYICRGDNIAVIGEFDEEADATKDLSRVRADPLKPVTH 96
            M+ SL  L G++VSV+T DGR I+G LKGYDQTIN++LE   ER++S   GVEQV LGLYI RGDN+AVIGE DEE D + DLS++ ADPL P++H
Sbjct:    1 MSGSLDTLVGRVVSVLTNDGRLIVGMLKGYDQTINIILEDSHERVFSATSGVEQVALGLYIVRGDNVAVIGEIDEEHDKSIDLSKICADPLNPISH 96          
BLAST of mRNA_H-paniculata_contig2.5113.1 vs. uniprot
Match: A0A8B7Z2R1_ACAPL (U6 snRNA-associated Sm-like protein LSm8 n=2 Tax=Asteroidea TaxID=7588 RepID=A0A8B7Z2R1_ACAPL)

HSP 1 Score: 125 bits (313), Expect = 2.030e-35
Identity = 61/96 (63.54%), Postives = 72/96 (75.00%), Query Frame = 0
Query:    1 MAASLAELQGKLVSVITGDGRQILGNLKGYDQTINLVLEGCSERIYSQARGVEQVQLGLYICRGDNIAVIGEFDEEADATKDLSRVRADPLKPVTH 96
            MA+ L       VSVIT DGRQI+G LKG+DQTINL+L+   ER+Y+ A GVEQV LGLYI RGDNIA+IGE DEE D+  DLS V+A+PL PV H
Sbjct:    1 MASGLESYINHTVSVITNDGRQIVGTLKGFDQTINLILDESHERVYNSASGVEQVVLGLYIIRGDNIAIIGEIDEETDSALDLSNVKAEPLNPVVH 96          
BLAST of mRNA_H-paniculata_contig2.5113.1 vs. uniprot
Match: W7TRW1_9STRA (U6 snRNA-associated Sm-like protein LSm8 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TRW1_9STRA)

HSP 1 Score: 125 bits (313), Expect = 4.140e-35
Identity = 59/96 (61.46%), Postives = 75/96 (78.12%), Query Frame = 0
Query:    1 MAASLAELQGKLVSVITGDGRQILGNLKGYDQTINLVLEGCSERIYSQARGVEQVQLGLYICRGDNIAVIGEFDEEADATKDLSRVRADPLKPVTH 96
            MAA+L +L+ +++ VIT DGR I+G LKG+DQT N++L+ C ER++S   GVEQV LGLYI RGDNIAV+GE DEEADA  DLS ++ D LKPV H
Sbjct:   25 MAATLEKLKDRVICVITNDGRNIVGVLKGFDQTTNIILQECHERVFSTTAGVEQVPLGLYIVRGDNIAVVGEMDEEADAALDLSSLKGDHLKPVIH 120          
BLAST of mRNA_H-paniculata_contig2.5113.1 vs. uniprot
Match: D7FKG9_ECTSI (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKG9_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 8.100e-35
Identity = 63/85 (74.12%), Postives = 67/85 (78.82%), Query Frame = 0
Query:   25 GNLKGYDQTINLVLEGCSERIYSQARGVEQ-------------VQLGLYICRGDNIAVIGEFDEEADATKDLSRVRADPLKPVTH 96
            GNLKGYD TINLVLEGC ERIYSQ+RGVEQ             VQLGLYICRGDNIAVIGE DE  DA+KDLSR+RA+PLKPVTH
Sbjct:   35 GNLKGYDHTINLVLEGCKERIYSQSRGVEQARETGTYSSMVVQVQLGLYICRGDNIAVIGEVDEVEDASKDLSRIRAEPLKPVTH 119          
BLAST of mRNA_H-paniculata_contig2.5113.1 vs. uniprot
Match: A0A6P6YHQ5_DERPT (U6 snRNA-associated Sm-like protein LSm8 n=2 Tax=Pyroglyphidae TaxID=6952 RepID=A0A6P6YHQ5_DERPT)

HSP 1 Score: 123 bits (308), Expect = 1.170e-34
Identity = 59/96 (61.46%), Postives = 73/96 (76.04%), Query Frame = 0
Query:    1 MAASLAELQGKLVSVITGDGRQILGNLKGYDQTINLVLEGCSERIYSQARGVEQVQLGLYICRGDNIAVIGEFDEEADATKDLSRVRADPLKPVTH 96
            MA +L    G+ VSVIT DGRQI+G LKG+DQTIN+++E C ER+YS + GVEQV LGLYI RGDN+AV+GE DEE D   + S +RA+PL PV H
Sbjct:    1 MANNLESYVGRTVSVITVDGRQIVGTLKGFDQTINIIMEECHERVYSVSAGVEQVFLGLYIIRGDNVAVVGEIDEELDKKVNYSIIRAEPLNPVVH 96          
BLAST of mRNA_H-paniculata_contig2.5113.1 vs. uniprot
Match: A0A7S4JWX1_9EUKA (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4JWX1_9EUKA)

HSP 1 Score: 123 bits (308), Expect = 3.310e-34
Identity = 58/96 (60.42%), Postives = 73/96 (76.04%), Query Frame = 0
Query:    1 MAASLAELQGKLVSVITGDGRQILGNLKGYDQTINLVLEGCSERIYSQARGVEQVQLGLYICRGDNIAVIGEFDEEADATKDLSRVRADPLKPVTH 96
            MAA +     K+V ++T DGR I+G LKG+DQT N+VL+ C ER++S + GVEQV LGLYI RGDNIAV+GE DEEADA  DL+ + A+PLKPV H
Sbjct:   36 MAAMMESYVDKVVQIVTNDGRNIVGVLKGFDQTTNVVLDECHERVFSSSAGVEQVVLGLYIVRGDNIAVVGEIDEEADAQLDLNEMTAEPLKPVVH 131          
BLAST of mRNA_H-paniculata_contig2.5113.1 vs. uniprot
Match: UPI0006B0C9FC (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B0C9FC)

HSP 1 Score: 122 bits (305), Expect = 3.350e-34
Identity = 59/96 (61.46%), Postives = 71/96 (73.96%), Query Frame = 0
Query:    1 MAASLAELQGKLVSVITGDGRQILGNLKGYDQTINLVLEGCSERIYSQARGVEQVQLGLYICRGDNIAVIGEFDEEADATKDLSRVRADPLKPVTH 96
            MAASL       VSVIT DGR I+G LKG+DQTINL+L+   ER+YS + GVEQV LGLYI RGDN+AVIGE D++ D   DLS ++A+PL PV H
Sbjct:    1 MAASLESYVNHTVSVITADGRNIVGTLKGFDQTINLILDESHERVYSSSHGVEQVVLGLYIIRGDNVAVIGELDDDLDERLDLSSIKAEPLNPVVH 96          
BLAST of mRNA_H-paniculata_contig2.5113.1 vs. uniprot
Match: UPI0014259F6A (U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014259F6A)

HSP 1 Score: 122 bits (305), Expect = 3.350e-34
Identity = 57/96 (59.38%), Postives = 73/96 (76.04%), Query Frame = 0
Query:    1 MAASLAELQGKLVSVITGDGRQILGNLKGYDQTINLVLEGCSERIYSQARGVEQVQLGLYICRGDNIAVIGEFDEEADATKDLSRVRADPLKPVTH 96
            MA ++       VSVIT DGR I+G LKG+DQT+NL+L+   ER++S A+GVEQV LGLYI RGDNIAVIGE D+E D++ D+S +RA+PL PV H
Sbjct:    1 MATAIESYVNHTVSVITNDGRVIVGTLKGFDQTVNLILDESHERVFSSAQGVEQVLLGLYIIRGDNIAVIGEIDDETDSSMDMSNIRAEPLNPVVH 96          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2.5113.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5S6R3V4_TRIMR5.360e-3865.96U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=T... [more]
A0A835ZJ72_9STRA1.740e-3662.50U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=T... [more]
A0A7I8VGN1_9ANNE1.430e-3562.50U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=D... [more]
A0A8B7Z2R1_ACAPL2.030e-3563.54U6 snRNA-associated Sm-like protein LSm8 n=2 Tax=A... [more]
W7TRW1_9STRA4.140e-3561.46U6 snRNA-associated Sm-like protein LSm8 n=2 Tax=M... [more]
D7FKG9_ECTSI8.100e-3574.12U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=E... [more]
A0A6P6YHQ5_DERPT1.170e-3461.46U6 snRNA-associated Sm-like protein LSm8 n=2 Tax=P... [more]
A0A7S4JWX1_9EUKA3.310e-3460.42U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=P... [more]
UPI0006B0C9FC3.350e-3461.46U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=L... [more]
UPI0014259F6A3.350e-3459.38U6 snRNA-associated Sm-like protein LSm8 n=1 Tax=A... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 3..72
e-value: 9.1E-18
score: 75.0
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 4..71
e-value: 6.0E-18
score: 64.3
NoneNo IPR availableGENE3D2.30.30.100coord: 2..95
e-value: 3.9E-24
score: 86.8
NoneNo IPR availablePANTHERPTHR15588:SF9U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM8coord: 12..96
NoneNo IPR availablePANTHERPTHR15588LSM1coord: 12..96
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 4..76

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2contigH-paniculata_contig2:60466..64185 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2.5113.1mRNA_H-paniculata_contig2.5113.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2 60466..64185 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2.5113.1 ID=prot_H-paniculata_contig2.5113.1|Name=mRNA_H-paniculata_contig2.5113.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=97bp
MAASLAELQGKLVSVITGDGRQILGNLKGYDQTINLVLEGCSERIYSQAR
GVEQVQLGLYICRGDNIAVIGEFDEEADATKDLSRVRADPLKPVTH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR010920LSM_dom_sf