mRNA_H-paniculata_contig2.5112.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2.5112.1 vs. uniprot
Match: D7FKG8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKG8_ECTSI) HSP 1 Score: 439 bits (1129), Expect = 7.530e-146 Identity = 243/491 (49.49%), Postives = 302/491 (61.51%), Query Frame = 1
Query: 1 SALLLGVAQGNQQFAAAAALLPGIHVMCHVDPKSAQDVPIKNADGAIEADSTKTISIAEALRTFWEELKTGPGPAVEAARLAWQQPCREVLTRAAASLGFESITALVDRIPGVGWGLVPCTPGGNAPCSLARG-KPGRHGKVAWFHLPLNEPSEKAGKALVDNILLATSDNLAPSFAAVQVHATETGTIAIAAEAHRDVPSGVLSGYVLHSMRPRKGQ--SDQQAGQSFDKGTKDLGTTADTVEFVEHYSPPNGGV-QGWSGAVSTKELPGRGLHRHVRVSVDVECYGRVCREGLGERGASSGNAQDEWCELLLSQHVPRGAYIDVDEVKARHDFDLISAYPSTRRMGIDTYGGAPIDVELPASVSGQHLVNFNVRLGMPKRDIDGDKQHAHIRVGLTLPVHLRYPETGCERIGQECEGYAWVEVPSPLVSVRCGDAEGGDGLFSPVYPSIPPTSVMLRVPRGIAWHRDLVAWGTVVAAAIGALYTLWSIL 1461
SALL+ AQ +Q FAA AL PGIHVMC+V P S D K A G T AL W +++ G A E RLAWQ PC +L A + L +I++L D P GW LVPC N C LA G G GKVAW HL + + G A+ D++LL + N S+A+V + + + +EAHR +P GVLSGY L P +D+ + D+G + FV+H + P V Q W G V+ LPG GLHRHVRV D C G C EGL ERG S + EWCE+LL+QHVP+GAYIDVDEVKARHDFD++S+ P RR+G++T+ G PIDVELP+SVSGQHLVNFN+ + M +RD + + I+ LTLPVHLRYP+ GCER G+ECEGYAWVEVP PL S+RCG A G G F PV P+ PP V LRVPRGIAWHRDLV GT AAA+G LYT++++L
Sbjct: 98 SALLIKAAQVSQTFAAVTALPPGIHVMCYVPP-STDDADEKPAAGDAGGKPAATAGDWSAL---WRDIRFSTGEAEEGKRLAWQAPCLSLLGDATSFLASAAISSLTDSTPRGGWALVPCASSSNLVCELASGGAKGDGGKVAWLHLAEDAQASGTGVAVADSLLLTSDGNQELSYASVSARSLGDAEVEVVSEAHRVLPGGVLSGYDLSVAPPNNALIGNDKSSDGEPDRGRPK--NVDEAAVFVDHSTAPVDVVGQRWRGDVAVVGLPGGGLHRHVRVKFDARCTGNAC-EGLSERGESQDSDASEWCEVLLAQHVPQGAYIDVDEVKARHDFDVLSSPPVGRRVGVETFEGGPIDVELPSSVSGQHLVNFNLWVDMSERDRGREGEARSIQADLTLPVHLRYPDPGCERRGEECEGYAWVEVPPPLASIRCGSA-GNMGQFFPVLPARPPVGVALRVPRGIAWHRDLVMMGTTGAAALGCLYTIYTLL 580
BLAST of mRNA_H-paniculata_contig2.5112.1 vs. uniprot
Match: A0A6H5L0R2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0R2_9PHAE) HSP 1 Score: 273 bits (699), Expect = 7.790e-82 Identity = 184/482 (38.17%), Postives = 243/482 (50.41%), Query Frame = 1
Query: 1 SALLLGVAQGNQQFAAAAALLPGIHVMCHVDPKSAQDVPIKNADGAIEADSTKTISIAEALRTFWEELKTGPGPAVEAARLAWQQPCREVLTRAAASLGFESITALVDRIPGVGWGLVPCTPGGNAPCSLARG-KPGRHGKVAWFHLPLNEPSEKAGKALVDNILLATSDNLAPSFAAVQVHATETGTIAIAAEAHRDVPSGVLSG----------------------YVLHSMRPRKGQSDQQAGQSFDKGTKDLGT---------TADTVEFVEHYSPP------------------------NGGVQGWSGAVSTKELPGRG-LHRH----VRVSVDVECYGRVCREGLGERGASSGNAQDEWCELLLSQHVPRGAYIDVDEVKARHDFDLISAYPSTRRMGIDTYGGAPIDVELPASVSGQHLVNFNVRLGMPKRDIDGDKQHAHIRVGLTLPVHLRYPETGCERIGQECEGYAWVEV 1263
SALL+ AQ +Q FAA AL PGIHVMC+V P S D K A A++A K ++ A W ++++G G A EA RLAWQ PC +L AA+SL +I++L D GW LVPC N C LA G G G+VAW HL + + G A+ D++LL TS A + H + + P+ L G +V HS P + G G G A T+ H+S +G + W ++ G H+H VRV + C G+ C + L ERG S E CE+LL+QHVPRGAYIDVDEVKARHDFD++S+ P RR+G++T+ G PIDVELP+SVSGQHLVNFN+ + M +RD + + + I+ LTLPVHLRYP+ GC+R G+ECEGYAWV+
Sbjct: 98 SALLMKAAQVSQTFAAVTALPPGIHVMCYVPP-STDDADEKPA--AVDAGG-KPVATAGGWSALWRDIRSGTGQAEEAKRLAWQTPCLSLLGDAASSLSSAAISSLADSASRGGWALVPCASSSNLVCELASGGAKGDGGQVAWLHLAEDAQAPATGVAVTDSLLL-TSLGGAEVEVISEAHRILLDGVLSGYDLSVAPPNNALLGNVKSSDGEPDRGRPMKVDEAAVFVDHSTAPADVVGQRWRGDVAVVGLPGGGLHRHVRYSFCRASTIVLSAHHSHDRLSAIMKKDARTGRGCCERAELIGDGKIGTWLPLCGDLQIMSAGGFHKHGSQRVRVKFNARCTGKAC-DDLSERGESQDGDALELCEVLLAQHVPRGAYIDVDEVKARHDFDVLSSPPIGRRVGVETFQGGPIDVELPSSVSGQHLVNFNLWVDMSERDRGLEGEASSIQADLTLPVHLRYPDPGCDRRGEECEGYAWVKA 573
BLAST of mRNA_H-paniculata_contig2.5112.1 vs. uniprot
Match: A0A835YP07_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP07_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 3.450e-17 Identity = 61/182 (33.52%), Postives = 85/182 (46.70%), Query Frame = 1
Query: 916 CELLLSQHVPRGAYIDVDEVKARHDFDLISAYPSTRRMGIDTYGGAPIDVELPASVSGQHLVNFNVRLGMPKRDIDGDKQHAHIRVGLTLPVHLRYPETGCERIGQECEGYAWVEVPSPLVSVRCGDAEGGDGLFSPVYPSIPPTSVMLRVPRGIAWHRDLVAWGTVVAAAIGALYTLWSIL 1461
C L L Q +PRGAY+D+DE ++R + + + + + GGAPIDVELPAS S H++ F+ D RV L+LPVH+RY +A V + P + CG A + P+ P PP + LRVP A R VA +G L LW++L
Sbjct: 365 CLLTLVQALPRGAYVDIDEARSRWRYFNSTTSTGDALVAVTSRGGAPIDVELPASASTPHVLAFSTAFPCAPATADA------ARVTLSLPVHVRYARPLASGT------HASVALAPPAAYLSCGGAP----VLLPLRPIAPPPPLRLRVPAARAHDRAAVAXXXXXXXXLGTLAALWAML 530
BLAST of mRNA_H-paniculata_contig2.5112.1 vs. uniprot
Match: UPI000A2A8924 (phosphatidylinositol-glycan biosynthesis class X protein isoform X1 n=2 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A8924) HSP 1 Score: 59.7 bits (143), Expect = 1.770e-6 Identity = 60/230 (26.09%), Postives = 92/230 (40.00%), Query Frame = 1
Query: 817 HVRVSVDVECYGRVCREGLGERGASSGNAQD-EW-----CELLLSQHVPRGAYIDVDEVKARHDFDLISAYPSTRRMGIDTYGGAPIDVELPASVS-GQHLVNFNVRLGMPKRDIDGDKQHAHIRVGLTLPVHLRY---PETG---------CERIGQECEGYAWVEVPSPLVSVRCGDAEGGDGLFSPVYPSIPPTSVMLRVPRGIAWHRDLVAWGTVVAAAIGALYTL 1449
H+ + Y V L ++G D EW C LLL + +PRG ++D+++VK T + +DVE PA + Q L + P + H V + LPVH+RY P TG RI +C+G V+ +V C A G+ L + + L VP G HR ++ T++ AA+GAL+ +
Sbjct: 14 HLSTACQHGLYNVVVTRFLAKKGFHRDLITDMEWMTMDNCSLLLHESMPRGLFVDLEQVK-------------TYDKQFKIRSSSKVDVEAPAHKAVAQDLWIY------PSXQQYTSVRKDHHSVSVILPVHIRYHKAPLTGQTSQTVTLAAPRILVKCDGKT-VQDTCQIVQTSCLPAXTGEHLCDWIDIEQELPDISLTVPVGDVNHRAIITIVTLLCAALGALWVM 223
BLAST of mRNA_H-paniculata_contig2.5112.1 vs. uniprot
Match: UPI00142591A5 (phosphatidylinositol-glycan biosynthesis class X protein-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI00142591A5) HSP 1 Score: 58.9 bits (141), Expect = 5.850e-6 Identity = 55/248 (22.18%), Postives = 100/248 (40.32%), Query Frame = 1
Query: 784 TKELPGRGLHRHVRVSVDVECYGRVCREGLGERGASSGNAQDEWCELLLSQHVPRGAYIDVDEVKARHDFDLISAYPSTRRMGIDTYGGAPIDVELPASVSGQH-LVNFNVRLGMPKRDIDGDKQHAHIRVGLTLPVHLRYPETGCERIGQECEGYAWVEVPSPLVSVRCGDAEGGD------------GLFSPVYPSI---------PPTSVMLRVPRGIAWHRDLVAWGTVVAAAIGALYTLWSIL 1461
++E+ G HR++ V ++ + L C +L+ H+P GA++D+D+++ R +F G IDVE P +S H +++F ++ P ++ + P+HLRY +A V + P + VRC D++ G+ GL + + ++ SV+L+VP G +V GTV +G LY ++ +L
Sbjct: 65 SREIHLSGFHRYLETKVQLQLSSQDFENSLT-------------CHILMIDHLPSGAFVDLDQLENRLEFG-----------GPQVLALEHIDVEKPQYLSSGHSILSFQTKVFPPTS--------SNFNIETAFPIHLRYHRPS----NHPTVNFANVTIHPPDMMVRC-DSDHGELSHQKLDTRIILGLCTAMKKNLCHWQLLQRNESASVILQVPVGQHSDTVVVLLGTVACVFVGVLYLIYILL 275 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2.5112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2.5112.1 >prot_H-paniculata_contig2.5112.1 ID=prot_H-paniculata_contig2.5112.1|Name=mRNA_H-paniculata_contig2.5112.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=487bp SALLLGVAQGNQQFAAAAALLPGIHVMCHVDPKSAQDVPIKNADGAIEADback to top mRNA from alignment at H-paniculata_contig2:56672..59665+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2.5112.1 ID=mRNA_H-paniculata_contig2.5112.1|Name=mRNA_H-paniculata_contig2.5112.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2994bp|location=Sequence derived from alignment at H-paniculata_contig2:56672..59665+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2:56672..59665+ >mRNA_H-paniculata_contig2.5112.1 ID=mRNA_H-paniculata_contig2.5112.1|Name=mRNA_H-paniculata_contig2.5112.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2922bp|location=Sequence derived from alignment at H-paniculata_contig2:56672..59665+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |