mRNA_H-paniculata_contig2.5108.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2.5108.1
Unique NamemRNA_H-paniculata_contig2.5108.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2.5108.1 vs. uniprot
Match: D7FKG2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKG2_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 1.150e-33
Identity = 66/106 (62.26%), Postives = 84/106 (79.25%), Query Frame = 2 
Query:  311 PNEYDTFFNNASKSGQAVIKNLDPEERARRAMEGEKLEDDIMEIATVLREKADEMVARTGSIDFAIIQPMIDEIQVLKGRYRLVVGATVAEDAESSVERKDADEPS 628
            PNEY+ FFN AS+ G    ++L PEERA+RAMEGEKLED+I+EIATVLREKADEMVA TG+I+F IIQPMIDEI VLK +Y++V+GAT   D + + +  D ++ S
Sbjct:    2 PNEYEAFFNKASRLGADATRDLAPEERAQRAMEGEKLEDEIIEIATVLREKADEMVAETGAINFEIIQPMIDEIAVLKSKYKVVMGATETADGDGAPDADDGEDAS 107
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2.5108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKG2_ECTSI1.150e-3362.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2contigH-paniculata_contig2:12020..14781 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_002180.1
Exons3
Model size1207
Cds size531
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2.5108.1prot_H-paniculata_contig2.5108.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2 12596..14681 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929505.9390943-UTR-H-paniculata_contig2:12019..125951622929505.9390943-UTR-H-paniculata_contig2:12019..12595Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2 12020..12595 -
1691480890.263412-UTR-H-paniculata_contig2:12019..125951691480890.263412-UTR-H-paniculata_contig2:12019..12595Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2 12020..12595 -
1622929506.0088398-UTR-H-paniculata_contig2:14681..147811622929506.0088398-UTR-H-paniculata_contig2:14681..14781Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2 14682..14781 -
1691480890.295703-UTR-H-paniculata_contig2:14681..147811691480890.295703-UTR-H-paniculata_contig2:14681..14781Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2 14682..14781 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929505.960529-CDS-H-paniculata_contig2:12595..126711622929505.960529-CDS-H-paniculata_contig2:12595..12671Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2 12596..12671 -
1691480890.2723722-CDS-H-paniculata_contig2:12595..126711691480890.2723722-CDS-H-paniculata_contig2:12595..12671Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2 12596..12671 -
1622929505.9759936-CDS-H-paniculata_contig2:13363..135091622929505.9759936-CDS-H-paniculata_contig2:13363..13509Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2 13364..13509 -
1691480890.280048-CDS-H-paniculata_contig2:13363..135091691480890.280048-CDS-H-paniculata_contig2:13363..13509Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2 13364..13509 -
1622929505.9958732-CDS-H-paniculata_contig2:14372..146811622929505.9958732-CDS-H-paniculata_contig2:14372..14681Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2 14373..14681 -
1691480890.2880237-CDS-H-paniculata_contig2:14372..146811691480890.2880237-CDS-H-paniculata_contig2:14372..14681Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2 14373..14681 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2.5108.1

>prot_H-paniculata_contig2.5108.1 ID=prot_H-paniculata_contig2.5108.1|Name=mRNA_H-paniculata_contig2.5108.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=177bp
MLKVSLLYACIIFPGMTGAFHVGWTSRGGPRLLSSRPPQHSMTGEKRGEA
WRSCSTWHRARAAPRPLRAFPNEYDTFFNNASKSGQAVIKNLDPEERARR
AMEGEKLEDDIMEIATVLREKADEMVARTGSIDFAIIQPMIDEIQVLKGR
YRLVVGATVAEDAESSVERKDADEPS*
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mRNA from alignment at H-paniculata_contig2:12020..14781-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2.5108.1 ID=mRNA_H-paniculata_contig2.5108.1|Name=mRNA_H-paniculata_contig2.5108.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2762bp|location=Sequence derived from alignment at H-paniculata_contig2:12020..14781- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTTTCCAGGGATGCTGCACACCAGTAGGTTCTGCTTGATGAAAAAGGGG
AATTACTACCCAAACTAAAGAATTGATCAACTGAAAAGCCGTAAAAGAGA
ATGCTCAAGGTATCCTTATTGTATGCATGCATTATATTTCCTGGGATGAC
TGGTGCCTTTCATGTTGGGTGGACCTCTCGCGGTGGCCCGCGATTATTGA
GTAGTCGACCACCTCAGCACTCTATGACGGGCGAAAAACGCGGTGAGGCA
TGGAGATCATGTTCTACATGGCATCGGGCCAGAGCGGCTCCGCGACCGCT
CCGAGCTTTTCCCAATGAATACGACACATTCTTCAACAATGCCTCCAAGT
CGGGGCAGGCTGTCATCAAGAACCTGGATCCCGAGGAGCGTGCTAGGCGA
GCTATGGAGGTCAGTAAGCCTTGCGGGCAATTGTGATATCGCACCGTGTT
TTGTCAACTTGAAGTGCTATTGGTCTTGACATACATTTGGATTGTAAAGT
GACAAATGTTGAGTTCGTTGTGCAGCATGTCTGATTTCTATATTGCTGTA
TATTGCCACTAATCGTGGTGGTGTAAGATCACCGGATCACCGTGTTTTGA
TTCATTGCAACAACGTAATGATTCTGCCTGAGATTTGAAATTTTTATGTT
GACAATGGAGTGCCGCAGTACGGTTTCCCTCAGCAACTCATGCGCGCAAT
GCGCCCTCTTTGGTGATACTGTACTACTTATCATATGCTTAAGGGCTTTT
AGGTCTTCGTGTCTAGGCGTAAAGCACAGCCATTCGGGCGGGGAGGTGGA
GATGTAAAAGGGGACGGGAAAGGGTAGAAAAGCGTAGTATAGAATACAAT
GGATAGTTAGTATACAAAAGGTATAGAGTAGAATACAGAAGGTAGTAAAA
TAGGTAGTGATTAAAGGGGGGTGGCACATATGCGTAACCACCTGAGTCTT
ACGTATGATCTGCTCCAACCAAACATGCCAGCCATATATGAACTCCATGT
AACCGAATAATCACGTAACCGTCGCTTTATCGATCATACCCAACAACTAC
TGCGGTGATCTCAACCTGCCGCATCAAACACGTTCAGACCGCGTGCAGCA
CTGGGCACCGTATCGCAGCTGTTAGATTGGTCCAGCCACCTGCTAACTTC
GGGTTAGCAAGGTTCAACTCCGATACAACGGATTCTCCTCGTAGCTCATT
GCCTGTGCAGGCATCTCACTCGCATTATCACTGTCCAGAATGACGTCTCA
CCGTGTACGTTAATCTACTCAGGGGGAGAAGTTGGAAGATGACATAATGG
AAATCGCGACAGTGTTGCGAGAAAAGGCTGACGAAATGGTGGCAAGAACG
GGGTCTATAGACTTCGCGATTATCCAACCGATGATCGACGAGATTCAGGT
TCTCAAGGGAAGATACAGGTAGGTGATCAGCACCCGGTCGGTGGTATTAT
ATGGCTCTAGAAGTATAGAGCTGCAAGCACTAATTTTTGTGTTGGAAGTT
CGATGTAGCGACCCCGCATGACCCATGAGCATGTATGCCCAATGATCGTC
ATGGAAATCAATCGTCTATAAGCTGGCAATCGTTCGCTCTCAAGTAAGGC
TGTGCCACTTTAGCCGAGTTCTAAACCCAACCTCTCACCAGTTAGTGTGG
AAAGCGCCTTGTTTGGCCACCTGGTCCTGTCCACATCGTGATGTATCCCG
TGATTTTCGTAGACCTATGCACCATCGCTACACGGAGAGAGCCGTTTTGC
CTCGGCCGATAGATTGTTTGCAACCCAACACAGCAGTGAAAGCGATGAAC
CCAAATTTCCCAGCGCTAGGATACAGACAACAACTTCTCGCAAAGTGCGT
CGCTCCTATTATTGTAGCTGCGTCGGTGCCGCTTGGAGAGGCGTTTGTTT
GATGAAAAAATCGCATATGTGTGAATCGGCCTCGCAATTGGATTCGCCTC
CTCAAAGTTTGGAAGTCGTGCAGATATACACGGCGTTGTTGGTGCCTTCG
TCGAAACCTCCACCCTACCTGAGCCTATCTTACGGTTTCACCTATTGCGT
TGACCTCTCCTATGTGTGTCGTCCGCGTTTTTTTATTATTGTTTGGGGGA
AATTCATTAGACTGGTGGTGGGAGCCACTGTTGCGGAGGATGCAGAGAGT
TCAGTGGAGCGAAAAGATGCAGACGAGCCATCTTGAAGAGTCGGCTACTT
GGTTCCCTCCCAGTGGTCGGGTAGTTGTGCTCCGTCCGATATTTCGTGGG
CGATAGATAGAGCCAGGCTTACAAAAACGATTTTTGCTGATGTTTTACGC
GTGCGGCTGCTCGTGAACTACTGTTACTGCCAGACGGTCGTATCTCGCGT
TCAAGATGATGTTGTACTTTCTGGCTATTTGTAGTGGTTATATTGGAAAA
AATGGTGCATGTCGTCAGTGCGTTTGGCTGCGCGGCCAGCGTGAACAATC
CTGTATCTAAAGGTTGTTGAACACAGCGGAGATTTGTCGCTGCGTGATTG
GTGGCTGTGCTATCTTATGAACAGAGAGTACGCTACATCGAAGCGTCAGA
CAATCCCCAAACTCCTACTGTAGGTAATCTAGTATTGATGCTTCCGGAAC
AGTTTTCCCTGCCGCCGGGGGATGGTTTTTGCCCCTTCCCTTGCACGTCT
CCCTCTCATCGGCCTTTTCTAGGGATATCTTTATGTTTTTTTCTCCCTCT
CTCCATTATTGCCCTCACGACTTAAAATGACCTGGTACATGGCATAAAAC
AGCCGCGTGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig2:12020..14781-

>mRNA_H-paniculata_contig2.5108.1 ID=mRNA_H-paniculata_contig2.5108.1|Name=mRNA_H-paniculata_contig2.5108.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1062bp|location=Sequence derived from alignment at H-paniculata_contig2:12020..14781- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCAAGGTATCCTTATTGTATGCATGCATTATATTTCCTGGGATGAC
TGGTGCCTTTCATGTTGGGTGGACCTCTCGCGGTGGCCCGCGATTATTGA
GTAGTCGACCACCTCAGCACTCTATGACGGGCGAAAAACGCGGTGAGGCA
TGGAGATCATGTTCTACATGGCATCGGGCCAGAGCGGCTCCGCGACCGCT
CCGAGCTTTTCCCAATGAATACGACACATTCTTCAACAATGCCTCCAAGT
CGGGGCAGGCTGTCATCAAGAACCTGGATCCCGAGGAGCGTGCTAGGCGA
GCTATGGAGATGCTCAAGGTATCCTTATTGTATGCATGCATTATATTTCC
TGGGATGACTGGTGCCTTTCATGTTGGGTGGACCTCTCGCGGTGGCCCGC
GATTATTGAGTAGTCGACCACCTCAGCACTCTATGACGGGCGAAAAACGC
GGTGAGGCATGGAGATCATGTTCTACATGGCATCGGGCCAGAGCGGCTCC
GCGACCGCTCCGAGCTTTTCCCAATGAATACGACACATTCTTCAACAATG
CCTCCAAGTCGGGGCAGGCTGTCATCAAGAACCTGGATCCCGAGGAGCGT
GCTAGGCGAGCTATGGAGGGGGAGAAGTTGGAAGATGACATAATGGAAAT
CGCGACAGTGTTGCGAGAAAAGGCTGACGAAATGGTGGCAAGAACGGGGT
CTATAGACTTCGCGATTATCCAACCGATGATCGACGAGATTCAGGTTCTC
AAGGGAAGATACAGGGGGAGAAGTTGGAAGATGACATAATGGAAATCGCG
ACAGTGTTGCGAGAAAAGGCTGACGAAATGGTGGCAAGAACGGGGTCTAT
AGACTTCGCGATTATCCAACCGATGATCGACGAGATTCAGGTTCTCAAGG
GAAGATACAGACTGGTGGTGGGAGCCACTGTTGCGGAGGATGCAGAGAGT
TCAGTGGAGCGAAAAGATGCAGACGAGCCATCTTGAACTGGTGGTGGGAG
CCACTGTTGCGGAGGATGCAGAGAGTTCAGTGGAGCGAAAAGATGCAGAC
GAGCCATCTTGA
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