mRNA_H-paniculata_contig1998.5102.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1998.5102.1 vs. uniprot
Match: D7FGV6_ECTSI (Acetyltransferase (Isoleucine patch superfamily protein) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV6_ECTSI) HSP 1 Score: 192 bits (488), Expect = 6.710e-50 Identity = 108/294 (36.73%), Postives = 167/294 (56.80%), Query Frame = 1
Query: 1204 VSGDLTCSDVYSWLPFISPQPDASAGAGESRSIMLVQVVNQGYLRIQENFLAFMERSAPYMKDHIFLLCMDDASVSHMAGLGVRCVLVDDSQTPEEKKRSEVWVVRVKVTSCLLEAGNSVVLSDNDAVWFKDPIKELDK---IEGDVIGSRAPWPANLGDPINGVTLCMGFIFFREGAQGMAEFQQHLEHSMIEKPDDQVSVNKAVAALKPVYDYNVTRSDMRFKESAAPGRCVL---TALPGTFRVTLLPHSTYTRFCQDMPITANTVVGHCHNWGSPERRIEYMKQAGTWIL 2067
++ D +CSD+ +WLP S ++ QVV++ Y ++ENF++ ME + + +++++L+C+D+ SV+ GLG+RCV P R ++WV+R+ VT CLL AG V++SD DA+W +DP +L ++ +V+ SRA P L G T+CMGF FFR G M F +E E +DQ++VN+A+ L V+D SDM F ++ PG V+ T G+ +VTLLPH+ YTR C+ PI+ +T+V HC + E +MK+A W L
Sbjct: 139 ITKDSSCSDMLAWLP------------PRSSPAVVFQVVSEPYASLEENFISNMELHSTFSRENLYLVCLDEESVAIFDGLGIRCVRYGCLGCPVS--RGDIWVLRIDVTICLLNAGQDVLMSDADAIWLRDPTDDLASDAFLDSNVVASRAVMPFPLYHKW-GATICMGFAFFRAGGSAMQAFMTVVEEIANELGNDQIAVNEALNKLDVVWD---PMSDMNFTDNTRPGTGVIENITVDGGSLKVTLLPHNKYTRSCRRTPISNDTIVAHCVSSDKGEGMATWMKEAHLWNL 414
BLAST of mRNA_H-paniculata_contig1998.5102.1 vs. uniprot
Match: A0A6H5LI82_9PHAE (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LI82_9PHAE) HSP 1 Score: 183 bits (465), Expect = 6.320e-48 Identity = 113/324 (34.88%), Postives = 176/324 (54.32%), Query Frame = 1
Query: 1129 RSHAVKLGSGTAHDENEEAGFPRSLVSGDLTCSDVYSWLPFISPQPDASAGAGESRSIMLVQVVNQGYLRIQENFLAFMERSAPYMKDHIFLLCMDDASVSHM-AGLGVRCVLVDDSQTPEEKKRSEVWVVRVKVTSCLLEAGNSVVLSDNDAVWFKDPIKELDK---IEGDVIGSRAPWPANLGDPINGVTLCMGFIFFRE-GAQGMAEFQQHLEHSMIEKPDDQVSVNKAVAALKPVYDYNVTRSDMRFKESAAPGRCVLTALPGT----FRVTLLPHSTYTRFCQDMPITANTVVGHCHNWGSPERRIEYMKQAGTWILDN 2073
RS A ++ G A A P++ TC+D W+P P+ D + +++QVV++ YL ++ NF+ ME ++ +DH++L+CMD+ SV + + +RC+ + P +E+WV+R +V SCL+EAG V++SD DA+W DP K+ + I+ V+ SR +P LG G T+CMGF+ FR G + + EF + ++ + + DDQ+SVN A L V+D SDMR+ ES + G + L F VTLLPH+ YTR C + PI+ TVV HC + + + +M Q+ W DN
Sbjct: 19 RSAAEEVAHGPAVSRRLPAITPKA------TCADWMKWIP---PRSDPA---------IVMQVVSRHYLELERNFIRLMELNSALTRDHLYLMCMDNVSVHFFESSMNIRCIPLTAFDFPSH---AEIWVLRARVVSCLVEAGQDVIMSDADALWLDDPFKDFNLPRVIDSSVVASRGKFPKPLGLEW-GATMCMGFVLFRATGRRVVGEFLEVMDALVHKNKDDQISVNLAAENLGIVWDQE---SDMRYVESDSFGFGTIDTLVDENNQPFSVTLLPHNAYTRVCDETPISNKTVVAHCWAPKTADSKTGWMVQSKLWFSDN 317
BLAST of mRNA_H-paniculata_contig1998.5102.1 vs. uniprot
Match: D8LK17_ECTSI (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK17_ECTSI) HSP 1 Score: 180 bits (457), Expect = 1.410e-46 Identity = 118/334 (35.33%), Postives = 173/334 (51.80%), Query Frame = 1
Query: 1204 VSGDLTCSDVYSWLPFISPQPDASAGAGESRSIMLVQVVNQGYLRIQENFLAFMERSAPYMKDHIFLLCMDDASVSHM-AGLGVRCVLVDDSQTPEEKKRSEVWVVRVKVTSCLLEAGN-SVVLSDNDAVWFKDPIKEL----DKIEGDVIGSRAPWPANLGDPINGVTLCMGFIFFR-EGAQGMAEFQQHLEHSMIEKPDDQVSVNKAVAALKPVYDYNVTRSDMRFKESAAPGRCVLTALP--------------------------GT------FRVTLLPHSTYTRFCQDMPIT-ANTVVGHCHNWGSPER----RIEYMKQAGTWILDN 2073
++ D TC D +W+P SR +++QVV++GY+ I+ NF+ MER++ + + +I+L+CMDDAS + +G+RCV + P + +W +RV+V SCLLE GN V++SD DA+W DP K+L D GD++ SR WP + G TLCMGFI FR GM F + +++ DDQ+SVN+A L V+D N SDMR++ES GR ++ L GT FRVTLLPHS YTR C ++ TVV HC+ P++ + +MK+A W + +
Sbjct: 30 ITKDATCVDWAAWIP------------PRSRPAVVMQVVSEGYIDIERNFIRLMERNSGFTRRNIYLMCMDDASKNFFDTKMGIRCVPMSALDLPTHE---HIWQLRVRVVSCLLEIGNVDVIMSDADALWLADPAKDLFSRGDGGRGDIVASRGSWPNDQWKEW-GSTLCMGFILFRARNVAGMKRFLDVMADLVVQNKDDQISVNRAAKQLGIVWDKN---SDMRYEESTGYGRGIIAGLGTSNNSTSGGGGDLFIGQTGHGVVVGRGTREVEAPFRVTLLPHSAYTRLCGRRTLSNQTTVVAHCY---FPQKEAGVKTSWMKKANLWSVQD 341
BLAST of mRNA_H-paniculata_contig1998.5102.1 vs. uniprot
Match: A0A6H5JTX9_9PHAE (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX9_9PHAE) HSP 1 Score: 124 bits (311), Expect = 3.660e-27 Identity = 88/262 (33.59%), Postives = 124/262 (47.33%), Query Frame = 1
Query: 1303 MLVQVVNQGYLRIQENFLAFMERSAPYMKDHIFLLCMDDASVSHM-AGLGVRCVLVDDSQTPEEKKRSEVWVVRVKVTSCLLEAGN-SVVLSDNDAVWFKDPIKELDKI----EGDVIGSRAPWPANLGDPINGVTLCMGFIFFR-EGAQGMAEFQQHLEHSMIEKPDDQ-----------------------------------------------------VSVNKAVAALKPVYDYNVTRSDMRFKESAAPGRCVLTAL 1908
M V VV++GY+ I+ NF+ MER++ + + +I+L+CMD AS + A +G+RCV + P + ++W +RVKV SCLLE G+ V++SD DA+W DP K+L GD+I SR WP N G TLCMGFI FR GM F + +++ DDQ +SVN+A L V+D N SDMR++ES GR V+ L
Sbjct: 1 MTVPVVSEGYIDIERNFIRLMERNSGFTRSNIYLMCMDGASKNFFDAKMGIRCVPMSALDLPTHQ---DIWQLRVKVVSCLLEVGHVDVIMSDADALWLADPAKDLFSRGGGGRGDIIASRGSWP-NEQSKEWGSTLCMGFIVFRARNVAGMKRFLDVMADLVVQNKDDQMLCECATGVENDFCGFPASSRPRSNPTLTESAFCVAAPSPNASLILSIVSVEKISVNRAAKQLGIVWDKN---SDMRYEESTGYGRGVIAGL 255
BLAST of mRNA_H-paniculata_contig1998.5102.1 vs. uniprot
Match: D7G4E2_ECTSI (Nucleotid_trans domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E2_ECTSI) HSP 1 Score: 120 bits (300), Expect = 1.200e-26 Identity = 69/185 (37.30%), Postives = 103/185 (55.68%), Query Frame = 1
Query: 1543 LEAGNSVVLSDNDAVWFKDPIKELDK---IEGDVIGSRAPWPANLGDPINGVTLCMGFIFFREGAQ--GMAEFQQHLEHSMIEKPDDQVSVNKAVAALKPVYDYNVTRSDMRFKESAAPGRCVLTALPGT----FRVTLLPHSTYTRFCQDMPITANTVVGHCHNWGSPERRIEYMKQAGTWILD 2070
+EAG+ V++SD DA+W DP+K+ + ++ SR +P +G + G T+CMGFI FR A M EF + ++E+ DDQ++VN A L V+ N SDMR+ ES G + +L F VTLLPHS YTR C P++ TVV HC + +P+ + ++M + W +D
Sbjct: 64 VEAGHDVMMSDADALWLADPMKDFSLPGVVGSSIVASRGSFPGEVGH-VWGATICMGFILFRTTASRVAMREFVTVMNALVLEEKDDQIAVNIAARDLGIVW--NQEDSDMRYTESTGFGVGFIDSLSDDDNQPFTVTLLPHSAYTRICASTPVSNTTVVAHCISSKTPQSKADWMHRMDLWAVD 245
BLAST of mRNA_H-paniculata_contig1998.5102.1 vs. uniprot
Match: D7FQM0_ECTSI (Nucleotid_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQM0_ECTSI) HSP 1 Score: 99.8 bits (247), Expect = 1.340e-20 Identity = 52/152 (34.21%), Postives = 86/152 (56.58%), Query Frame = 1
Query: 1363 MERSAPYMKDHIFLLCMDDASVSHMAG-LGVRCVLVDDSQTPEEKKRSEVWVVRVKVTSCLLEAGNSVVLSDNDAVWFKDPIKELDK---IEGDVIGSRAPWPANLGDPINGVTLCMGFIFFREGAQ--GMAEFQQHLEHSMIEKPDDQVSV 1800
ME + ++H++L+C+DD S+ +G+ C+ + + ++WV+RV+V SCL EAG+ V++SD DA+W DP+K+ I+ ++ SR P +G + G T+CMGFI FR A M +F + + E DDQ++V
Sbjct: 1 MELRTSFTRNHLYLMCLDDDSLHFFESFMGIHCIPLSGLNISSHE---QIWVLRVRVVSCLAEAGHDVIMSDADALWLADPMKDFSLPGVIDSSIVASRGKKPKEVGK-VWGATMCMGFILFRATANRTAMGKFVTVMNALVFESEDDQIAV 148
BLAST of mRNA_H-paniculata_contig1998.5102.1 vs. uniprot
Match: A0A383W3G7_TETOB (Nucleotid_trans domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W3G7_TETOB) HSP 1 Score: 90.5 bits (223), Expect = 1.160e-14 Identity = 76/291 (26.12%), Postives = 131/291 (45.02%), Query Frame = 1
Query: 1264 PDASAGAGESRSIMLVQVVNQGYLRIQENFLAFMERSAPYMKDHIFLLCMDDASVSHMA---GLGVRCVLVDDSQTPE--------EKKRSEVWVVRVKVTSCLLEAGNSVVLSDNDAVWFKDPIKELDKIEG------DVIGSRAPWPANLGDPINGVTLCMGFIFFREGAQGMAEFQQHLEHSMIEKP---DDQVSVNKAVAALKPVYDYNVTRSDMRFKESAAPGRCVLTALPGTFRVTLLPHSTYTRFCQDMPITANTVVGHCH-----NWGSPERRIEYMKQAGTW 2061
P+ +R I+L +V N GY + EN+L +++ + + ++ ++ S A G+G + +TPE + + +WV R+++ ++ AG VV+SD DA+WF+D + +++ D+ S+ WP + C+G FF A A + L H+ DDQ ++N + + + + T + ++S G + TA P RV LPH Y RFC D + N VVGHC N+ +P+ + + MK G W
Sbjct: 406 PEWDGSIPPARPIILTEVSN-GYEAVLENWLNWLQAGGVDLT-RVLVVTKGSSAASVKAIVDGMGPSVYEMPPLETPEITIMNKNDDPVLNTLWVERMRMLYEIVGAGVPVVMSDLDAIWFRDALSDIEAKAAAQPGGFDMALSQGMWPPETYRVFR-TSGCLGLAFFNATAGSRAVLRHMLAHAQRNMHLMFDDQQALNHQLVMANLLVN-STTPAPSGLQDSVVIGSQITTA-PDPLRVLFLPHVQYQRFCDDATMK-NAVVGHCRIRDVQNFKTPQMKQQLMKSMGLW 690
BLAST of mRNA_H-paniculata_contig1998.5102.1 vs. uniprot
Match: A0A7J7PMX7_9CHLO (Nucleotid_trans domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PMX7_9CHLO) HSP 1 Score: 76.6 bits (187), Expect = 4.600e-11 Identity = 72/268 (26.87%), Postives = 122/268 (45.52%), Query Frame = 1
Query: 1264 PDASAGAGESRSIMLVQVVNQGYLRIQENFLAFMERSAPYMKDHIFLLCMDDASVSHMA---GLGVRCVLVDDSQTP--------EEKKRSEVWVVRVKVTSCLLEAGNSVVLSDNDAVWFKDPIKELDKIEGDVIG------SRAPWPANLGDPINGVTLCMGFIFFREGAQGMAEFQQHLEHS---MIEKPDDQVSVN-KAVAALKPVYDYNVTRSDMRFKESAAPGRCVLTALPGTFRVTLLPHSTYTRFCQDMPITANTVVGHC 2004
P+ +R I+L +V N GY + EN+L +++ + + ++ +++ + A GLG + +TP ++ + +WV R+++ ++ AG VV+SD DA+WF+D + +++ G S+ WP + C+G FF A A + L H+ M DDQ ++N + V A + N S ++ + G + TA P RV LPH Y RFC D +T+ VVGHC
Sbjct: 95 PEWDGSVPPARPIILTEVSN-GYEAVLENWLNWLDACGVDLT-RVLVVTKGNSAAAVKAIVDGLGPVVYEMPALETPPIQIMNKNDDPALNTLWVERMRMLYEIVGAGVPVVMSDLDAIWFRDALADIEAKAAAQPGGFDMGLSQGMWPPETYRLFK-TSGCLGLAFFNATAGSRAVLRHMLHHAQRNMHVMFDDQQALNHQLVMANLAINSTNPAPSGLQ--DEIVVGSQITTA-PDPLRVVFLPHVQYQRFCDDATLTS-AVVGHC 355 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1998.5102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1998.5102.1 >prot_H-paniculata_contig1998.5102.1 ID=prot_H-paniculata_contig1998.5102.1|Name=mRNA_H-paniculata_contig1998.5102.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=258bp MLVQVVNQGYLRIQENFLAFMERSAPYMKDHIFLLCMDDASVSHMAGLGVback to top mRNA from alignment at H-paniculata_contig1998:2289..11426- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1998.5102.1 ID=mRNA_H-paniculata_contig1998.5102.1|Name=mRNA_H-paniculata_contig1998.5102.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=9138bp|location=Sequence derived from alignment at H-paniculata_contig1998:2289..11426- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1998:2289..11426- >mRNA_H-paniculata_contig1998.5102.1 ID=mRNA_H-paniculata_contig1998.5102.1|Name=mRNA_H-paniculata_contig1998.5102.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1548bp|location=Sequence derived from alignment at H-paniculata_contig1998:2289..11426- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |