mRNA_H-paniculata_contig19969.5099.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19969.5099.1
Unique NamemRNA_H-paniculata_contig19969.5099.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19969.5099.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19969contigH-paniculata_contig19969:1386..4746 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size2279
Cds size855
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19969.5099.1prot_H-paniculata_contig19969.5099.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19969 1409..3345 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929504.5924718-UTR-H-paniculata_contig19969:1385..14081622929504.5924718-UTR-H-paniculata_contig19969:1385..1408Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19969 1386..1408 +
1691480889.7096794-UTR-H-paniculata_contig19969:1385..14081691480889.7096794-UTR-H-paniculata_contig19969:1385..1408Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19969 1386..1408 +
1622929504.6620147-UTR-H-paniculata_contig19969:3345..47461622929504.6620147-UTR-H-paniculata_contig19969:3345..4746Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19969 3346..4746 +
1691480889.7646434-UTR-H-paniculata_contig19969:3345..47461691480889.7646434-UTR-H-paniculata_contig19969:3345..4746Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig19969 3346..4746 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929504.6058748-CDS-H-paniculata_contig19969:1408..17381622929504.6058748-CDS-H-paniculata_contig19969:1408..1738Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19969 1409..1738 +
1691480889.7181382-CDS-H-paniculata_contig19969:1408..17381691480889.7181382-CDS-H-paniculata_contig19969:1408..1738Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19969 1409..1738 +
1622929504.6255326-CDS-H-paniculata_contig19969:2292..25851622929504.6255326-CDS-H-paniculata_contig19969:2292..2585Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19969 2293..2585 +
1691480889.7330883-CDS-H-paniculata_contig19969:2292..25851691480889.7330883-CDS-H-paniculata_contig19969:2292..2585Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19969 2293..2585 +
1622929504.6438491-CDS-H-paniculata_contig19969:3113..33451622929504.6438491-CDS-H-paniculata_contig19969:3113..3345Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19969 3114..3345 +
1691480889.7521029-CDS-H-paniculata_contig19969:3113..33451691480889.7521029-CDS-H-paniculata_contig19969:3113..3345Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19969 3114..3345 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19969.5099.1

>prot_H-paniculata_contig19969.5099.1 ID=prot_H-paniculata_contig19969.5099.1|Name=mRNA_H-paniculata_contig19969.5099.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=285bp
MAEPEDVKRLLCKHLSKASYNKNVADLIADTWQTQAVILQTWPALHEGEG
FSAFTAMLPLGPVSALVVLFRGTKGTPEWLSYPEALATGELLRSMEGLTG
FTPFVDTLEQVWNQPGDGVNGCPPFTMKDAISRALMEGKLVWMAGHSRGG
AIAQLAAALLMCGQESRYPGTNLCQLSIMTFNSPMCLLAGDVIRYEEARE
EKGVEHRRVEHRGDLVRLLPPGMGLQHGGDPETHGEGLMQNERIVGTALS
AVRAFAERGSNSDTGGAFRSLASAFVKHATESHR*
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mRNA from alignment at H-paniculata_contig19969:1386..4746+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19969.5099.1 ID=mRNA_H-paniculata_contig19969.5099.1|Name=mRNA_H-paniculata_contig19969.5099.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3361bp|location=Sequence derived from alignment at H-paniculata_contig19969:1386..4746+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTAACCTCCACGGCAGCAAAATGGCGGAACCAGAGGACGTCAAGCGA
CTGCTGTGTAAGCACCTGTCCAAGGCTTCCTACAACAAAAACGTTGCCGA
CCTTATAGCTGACACGTGGCAGACACAAGCAGTCATTCTGCAGACATGGC
CAGCACTGCATGAGGGGGAGGGCTTCTCAGCTTTCACCGCCATGCTCCCT
CTTGGGCCGGTTTCTGCCTTGGTGGTCTTGTTCCGCGGGACAAAGGGCAC
ACCTGAATGGCTTTCGTACCCTGAAGCTCTTGCCACCGGTGAACTGCTGA
GATCCATGGAAGGGCTGACAGGTTTCACTCCTTTTGTTGATACCTTAGAA
CAGGTGAGCCTACGCAGAATGTAGCACGATGCCATGAATCTCGGTCGCCC
GCAAGCAGTATGATTCGAGGTAATCTTAGCTGCAGCTCATTAGGGTTGGG
GTAGGCAACTAGTTCCACGCCAACCTTGTTGTGGGAGATTCGATGCAAGA
AAAGGCTGTTGGAACCGCCAGCCAGCGTCAGGTGACTTTTATCCGATAGT
CTTGGTTGTGTCCGATAGGATGCGCTGGAGACTAAGCTATGTGGATCATG
ACAAAGTACAGCAATTGAAGGTAGCTGGTGAGGAAACCTGTACGTTGTTT
CGCTGTCGCAAATTCTTCGAGATGGCGTCGTCGAAGAGTCTGGCTTCTAT
TCCTGTTCAGATTGATTCTTTGTAAGTAACCCTACCGCTTATCCTGTTGC
GGGTTGAGTCCCACATACTTGGTGTGGAGGGACTCCCTACGATGAACCTC
CTCCCGGCTATCCTTAACATGAACAACCAATTTGTCAAGAGGCATAAACC
CAGAATGACTCTTATCCGCACCTCAAGTGAACAGTAAATACAATTGATCG
TTCGCAGGTATGGAATCAACCCGGAGACGGAGTGAATGGCTGCCCACCTT
TCACAATGAAAGACGCCATATCGCGAGCGCTTATGGAAGGGAAACTGGTG
TGGATGGCCGGACACAGCAGGGGGGGAGCGATCGCACAGCTAGCCGCTGC
GCTTCTTATGTGCGGGCAAGAGAGTCGCTACCCCGGAACCAATCTGTGTC
AGCTGTCCATCATGACCTTCAATTCGCCGATGTGTCTCTTGGCGGGGGAC
GTTATACGCTACGAGGAAGCTCGAGAGGAGAAGGGCGTCGAACATAGAAG
GTGCCCGCCCACCCACCCAGCTGCTCATGTAGATATTGATTCTATCTCCA
TTTTGTTGCCTTGATCAGACGTGAGGTCGACGACTTCTTGTTCGTTGGTT
GCCGATTTTCCCGTTGAGCGTTGAAAAAAGAGTAGGCATATTTAGAATAC
CATATGTGCATTTCTTACGGCAAAGGTTCTCCAGGTAAGCGATACGTGTC
GCTCAGGCAGCAGGCAGTCCCAGTCAAAGGCTTGGGTCAGCATGACTGCG
TTGAGCCGAAGTCGTGCTCGAAACATGTTTTGTTTGTTGGGGCAGGAAAG
CGCAGTGACCAGGTACTAAAACGTAATATATCGCTGCACAAAATGAAATA
TTTCTCCGCCAAAATACCCCCCCCCCCTGGCCAGGGCGCCTCCTGTTTCC
AATCTTTTCAGTATATCGTTCTCCAGCACGTTGCCGTCATGTGCTTTTTG
CCGGAGAGAAAAAAATGCGCCATTGAGCCGTTCGTCGAAACCCGTTTTTT
TTTCGTCGGTATTCTGCGTTTTGTGTAGGGTCGAACACCGCGGCGATTTG
GTCCGACTGTTGCCCCCGGGCATGGGGTTGCAGCATGGCGGAGATCCCGA
GACTCACGGGGAAGGCTTGATGCAAAATGAGCGCATTGTTGGCACCGCAC
TGTCAGCAGTGCGTGCTTTTGCCGAGCGCGGTTCTAATTCTGACACAGGC
GGAGCTTTCAGGTCTTTAGCTTCGGCGTTTGTCAAACACGCTACCGAGTC
TCACCGCTAAGATGTCCGCAGGCTGTGGCAAAGAAATAGAAAGCTTTAGG
GCCGTACGTAGGTGTAAACTCCGACCTGGTTCTTCGGCAGGGCGGTAATC
GCGACACCCCAGTAGGTAGCTGCAAAGCTTGACAAAATATCACTGAGAGA
TGACGAGGGCACTTCGAATATCTTGCCGATATGTGTGCCCAAGTCATTCG
GTGGTGACGGCTTTTGGCCTGTGTTGCTTGAGTAAGGCCTATACTTGGGG
GTGGGATAGCGTGGAGGTACTCGTAGACGTCATGACTGTCGATGCTGTGG
GGGGTGTTTGTTTCCCACTTAGATATGTTGTACAGGGAGCGGAGCACATC
TAGTGTCAGCCACGACTTCTACAGGTGTCACTTGATACACCTAGTTAGAG
CGTCTATTGTACCGGGTTTTCTACACGATATATCTGGCCACGGTGGTTGA
GACGATCTGGAGAATGGTTCCTTTGGCCCTTGACGGTGACCTGGAGGTTG
TTTATTTCAACGGGACGCTTGAACAATGCGGTTGCTGCTTGTCAAGGCAG
TCGCGCCGTGTGTGCTGATCCTTTCAGTGAGCACGATGTAAGAAGGGTTC
AGGGATTTGCAACATGCGCGAAGCATTTAGGTTGCGCACGTGAACGATAC
ACCTGCCTGCTCTGTGCATATCCTTCCTTTGAGTATTGTAATCGTTTTGT
ATACATTTATATAGAAACATATATACGAACTCGAGTTTGACCTCTTGTAT
CTTGTTGGTGCCAGAACGTGACCCGACTGTCGAAACGCTACGGAAAAATA
ATTTTGTAGGGAGCTTATGATGCGTTTCTTGATTATGTCGGTTGCCTTTA
GGATTTAATATTTGTCGGGGTGTCGGAGTGTTTTGGAATACGACTTGAAT
TGTGTTGGTTCTTCAAGTATATTTCAGCGGCCGGTAGGGCATTCGTAGGC
ATGTGCTCAAACTCAAATAGGACTAAATCCATTCGAGTATTTGCTACACG
ATAAGTGTCCGATGGGCATTTTGGAGGAAAGTTGTCGCGGTGAATTGTTT
TTAGGGATTATATCGTACTGATTTTGCAAGACTTCGGTGAAAGGGGTTGT
TTTTTTGTTGATGGCGCCATGCTACGTATTTCGTGGGTATAGGTGAATAA
TTAGTTTATAGCAATTGGAGGGTGAACTTTGATCGGCTCTGTAGTGTCGT
TGTTTGCTGGAATGATGAGTTCCCCGGAATCTCGTGCAAACACATGTGAT
GAGGAAGAGGACAAGCGAAGTTTTCAGTTGGTTGAGTTATCGGTATCCAA
TATTAGATATTTCCTAGGCTCCTTGAAGCCTCTTGATGTCTGGAACAAAC
AAAGAGGATTTTATACAACTTCTTTATTACAGGTCCCGTTTAGGGAAACA
GATGAGAGTGT
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Coding sequence (CDS) from alignment at H-paniculata_contig19969:1386..4746+

>mRNA_H-paniculata_contig19969.5099.1 ID=mRNA_H-paniculata_contig19969.5099.1|Name=mRNA_H-paniculata_contig19969.5099.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1710bp|location=Sequence derived from alignment at H-paniculata_contig19969:1386..4746+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGGAACCAGAGGACGTCAAGCGACTGCTGTGTAAGCACCTGTCCAA
GGCTTCCTACAACAAAAACGTTGCCGACCTTATAGCTGACACGTGGCAGA
CACAAGCAGTCATTCTGCAGACATGGCCAGCACTGCATGAGGGGGAGGGC
TTCTCAGCTTTCACCGCCATGCTCCCTCTTGGGCCGGTTTCTGCCTTGGT
GGTCTTGTTCCGCGGGACAAAGGGCACACCTGAATGGCTTTCGTACCCTG
AAGCTCTTGCCACCGGTGAACTGCTGAGATCCATGGAAGGGCTGACAGGT
TTCACTCCTTTTGTTGATACCTTAGAACAGATGGCGGAACCAGAGGACGT
CAAGCGACTGCTGTGTAAGCACCTGTCCAAGGCTTCCTACAACAAAAACG
TTGCCGACCTTATAGCTGACACGTGGCAGACACAAGCAGTCATTCTGCAG
ACATGGCCAGCACTGCATGAGGGGGAGGGCTTCTCAGCTTTCACCGCCAT
GCTCCCTCTTGGGCCGGTTTCTGCCTTGGTGGTCTTGTTCCGCGGGACAA
AGGGCACACCTGAATGGCTTTCGTACCCTGAAGCTCTTGCCACCGGTGAA
CTGCTGAGATCCATGGAAGGGCTGACAGGTTTCACTCCTTTTGTTGATAC
CTTAGAACAGGTATGGAATCAACCCGGAGACGGAGTGAATGGCTGCCCAC
CTTTCACAATGAAAGACGCCATATCGCGAGCGCTTATGGAAGGGAAACTG
GTGTGGATGGCCGGACACAGCAGGGGGGGAGCGATCGCACAGCTAGCCGC
TGCGCTTCTTATGTGCGGGCAAGAGAGTCGCTACCCCGGAACCAATCTGT
GTCAGCTGTCCATCATGACCTTCAATTCGCCGATGTGTCTCTTGGCGGGG
GACGTTATACGCTACGAGGAAGCTCGAGAGGAGAAGGGCGTCGAACATAG
AAGGTATGGAATCAACCCGGAGACGGAGTGAATGGCTGCCCACCTTTCAC
AATGAAAGACGCCATATCGCGAGCGCTTATGGAAGGGAAACTGGTGTGGA
TGGCCGGACACAGCAGGGGGGGAGCGATCGCACAGCTAGCCGCTGCGCTT
CTTATGTGCGGGCAAGAGAGTCGCTACCCCGGAACCAATCTGTGTCAGCT
GTCCATCATGACCTTCAATTCGCCGATGTGTCTCTTGGCGGGGGACGTTA
TACGCTACGAGGAAGCTCGAGAGGAGAAGGGCGTCGAACATAGAAGGGTC
GAACACCGCGGCGATTTGGTCCGACTGTTGCCCCCGGGCATGGGGTTGCA
GCATGGCGGAGATCCCGAGACTCACGGGGAAGGCTTGATGCAAAATGAGC
GCATTGTTGGCACCGCACTGTCAGCAGTGCGTGCTTTTGCCGAGCGCGGT
TCTAATTCTGACACAGGCGGAGCTTTCAGGTCTTTAGCTTCGGCGTTTGT
CAAACACGCTACCGAGTCTCACCGCTAAGGTCGAACACCGCGGCGATTTG
GTCCGACTGTTGCCCCCGGGCATGGGGTTGCAGCATGGCGGAGATCCCGA
GACTCACGGGGAAGGCTTGATGCAAAATGAGCGCATTGTTGGCACCGCAC
TGTCAGCAGTGCGTGCTTTTGCCGAGCGCGGTTCTAATTCTGACACAGGC
GGAGCTTTCAGGTCTTTAGCTTCGGCGTTTGTCAAACACGCTACCGAGTC
TCACCGCTAA
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