mRNA_H-paniculata_contig1996.5098.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1996.5098.1
Unique NamemRNA_H-paniculata_contig1996.5098.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1996.5098.1 vs. uniprot
Match: D7FID4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FID4_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 3.400e-37
Identity = 81/161 (50.31%), Postives = 101/161 (62.73%), Query Frame = 2 
Query:  257 MDESAIFRILRQFRKVRGPDFHQPAIRGGRTKQLGCGDGAAPGDSDGGIAKRHPLSKEERAEVEKALTSCTPNSGAARGDAAKDGLASDETVGSEGEARAAQMDLVAAVDFFNTFDAWIDSKYPGDRGSATKVKVAFRKQHRALVANLCLEDIEDIAQAMQ 739
            M+E+++ R LRQ+RKVRGPDFHQPA R  + K           + +GG+ KR PL+KEERAE EK L       G     A           G+  +A   + DL+  V+F   FDAW+D KYPGDRG +TKVKVAFRKQHRA+V+ L LEDIE+IAQAMQ
Sbjct:    1 MNEASLLRALRQYRKVRGPDFHQPATRSNQGKIE---------NGNGGVEKRQPLTKEERAEAEKVLAEAAAAGGGGLESAHTQQALPGGDAGAGADADTTRPDLIDPVEFLKEFDAWVDGKYPGDRGRSTKVKVAFRKQHRAVVSKLNLEDIEEIAQAMQ 152
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BLAST of mRNA_H-paniculata_contig1996.5098.1 vs. uniprot
Match: A0A836CKU6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKU6_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 2.260e-16
Identity = 61/161 (37.89%), Postives = 88/161 (54.66%), Query Frame = 2 
Query:  254 SMDESAIFRILRQFRKVRGPDFHQPAIRGGRTKQLGCGDGAAPGDSDGGIAKRHPLSKEERAEVEKALTSCTPNSGAARGDAAKDGLASDETVGSEGEARAAQMDLVAAVDFFNTFDAWIDSKYPGDRGSATKVKVAFRKQHRALVANLCLEDIEDIAQAM 736
            S DE++  R L ++ K+R  DF+ P     ++  +     A    S    AKR PL+ EERA  ++A  +   NS  A           D + G    A AA      + DF   FDAW+DS++P DR +ATKVKVAFR++H+ LVA+L LE+ E+IA+A+
Sbjct:    3 SFDEASFMRALSRYPKIRNSDFYLPLEEKPKSLLIAASRDA----SSTATAKRVPLTPEERA-AQEAQRATQANSKGADNSXXXXXXXGDASTGETAGAVAAD-----SADFLKVFDAWVDSQWP-DRATATKVKVAFRREHKRLVASLNLEETEEIAEAL 152
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1996.5098.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FID4_ECTSI3.400e-3750.31Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CKU6_9STRA2.260e-1637.89Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1996contigH-paniculata_contig1996:6840..12245 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_001480.1
Exons3
Model size2033
Cds size486
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1996.5098.1prot_H-paniculata_contig1996.5098.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1996 7096..10954 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929504.4946365-UTR-H-paniculata_contig1996:6839..70951622929504.4946365-UTR-H-paniculata_contig1996:6839..7095Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1996 6840..7095 +
1691480889.6497486-UTR-H-paniculata_contig1996:6839..70951691480889.6497486-UTR-H-paniculata_contig1996:6839..7095Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1996 6840..7095 +
1622929504.5595915-UTR-H-paniculata_contig1996:10954..122451622929504.5595915-UTR-H-paniculata_contig1996:10954..12245Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1996 10955..12245 +
1691480889.699903-UTR-H-paniculata_contig1996:10954..122451691480889.699903-UTR-H-paniculata_contig1996:10954..12245Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1996 10955..12245 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929504.516385-CDS-H-paniculata_contig1996:7095..72481622929504.516385-CDS-H-paniculata_contig1996:7095..7248Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1996 7096..7248 +
1691480889.6605308-CDS-H-paniculata_contig1996:7095..72481691480889.6605308-CDS-H-paniculata_contig1996:7095..7248Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1996 7096..7248 +
1622929504.5358834-CDS-H-paniculata_contig1996:9589..98531622929504.5358834-CDS-H-paniculata_contig1996:9589..9853Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1996 9590..9853 +
1691480889.669512-CDS-H-paniculata_contig1996:9589..98531691480889.669512-CDS-H-paniculata_contig1996:9589..9853Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1996 9590..9853 +
1622929504.548505-CDS-H-paniculata_contig1996:10885..109541622929504.548505-CDS-H-paniculata_contig1996:10885..10954Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1996 10886..10954 +
1691480889.6859317-CDS-H-paniculata_contig1996:10885..109541691480889.6859317-CDS-H-paniculata_contig1996:10885..10954Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1996 10886..10954 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1996.5098.1

>prot_H-paniculata_contig1996.5098.1 ID=prot_H-paniculata_contig1996.5098.1|Name=mRNA_H-paniculata_contig1996.5098.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=162bp
MDESAIFRILRQFRKVRGPDFHQPAIRGGRTKQLGCGDGAAPGDSDGGIA
KRHPLSKEERAEVEKALTSCTPNSGAARGDAAKDGLASDETVGSEGEARA
AQMDLVAAVDFFNTFDAWIDSKYPGDRGSATKVKVAFRKQHRALVANLCL
EDIEDIAQAMQ*
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mRNA from alignment at H-paniculata_contig1996:6840..12245+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1996.5098.1 ID=mRNA_H-paniculata_contig1996.5098.1|Name=mRNA_H-paniculata_contig1996.5098.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5406bp|location=Sequence derived from alignment at H-paniculata_contig1996:6840..12245+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATATATTTTATCTTTATCACCATGACATTCCTGTATAGTAGTTTTTGCCC
TTCGTTACGCGTCTGAGTTTGCTATGATTCGAGTTTTCGGAATAACGGGT
ATCGACCAATTGATGGACAAATGTAAAAGAAAGAAATATTGCCCTATTCC
TTTAGACTAGGCTGCGCGTGCCCTGCAGCACTGTAGCTCACGCTGGCCAA
GCTTAACCGACTACTGCTTCCTAGTACTCTACATACCTTCATTGATATAT
AGGTCAATGGATGAATCGGCTATTTTTCGTATACTGCGACAATTCCGTAA
GGTGCGAGGGCCGGACTTTCACCAGCCTGCTATCAGGGGAGGCCGAACGA
AACAGCTCGGCTGTGGCGATGGTGCAGCACCAGGAGACAGCGACGGAGGG
ATAGCGAAGGTGGACATCCTTGCTTGCTGTACGGCGAAGGCCAGGGCGTA
GTGTTTTTTTGCTTGGAATTTTCTTTGATGCTTTCGTTGGCGAATGTGAT
ATACGATACGTACGGTATGGAGTGAGGGCGCTGTACACGCGGCCCCCTTC
AAGTTATACCATTTTTGTACAATCGATGCAGACACTTGGGACACTTGGCA
AGAACGCTCGTAGTGGGTAAGAGTCTGTAGGGGGAATCGTATACATAGAT
ATACTATACGTGAGACATTATTTCTTCACAGATCCATACGGCAGAGTGCA
GATAATCATGTGTTGGAGGAAAATTCGGCGTCGTTCTGCTGCTTGGACAT
AGCCAGAGGCTTTCCACCCCACGCAGCAGTTCAAACGGGTATCGGATCGT
CTTGCATGGGTGTTGGTATGTGTGGCAGTAGATTATTTTTCGTGGCACAA
CCTGCACAGACTCGGTGTAACAAGTGTATACAATGGATAATAGATACGAA
AACAGACAGATGAACTGTGTTTCGGGCTTTCCATTCTGTCATTCCCTAGA
GGCATAGAATTAACATGGGGGCTAGTATCCACACCTGTGGTGATCGTACC
CACACCCATGCGTAATAAAAAAACCTTCATCCTGTATGAATTTTGAAAGT
TGCTGTCAAGTATCCTATAGCCATGATTCATGACATAACCTCAGCATTCA
TTCACATTTACATTTTGAAACAGCTATACACAAGAGTACTATTGAGGGCT
TGCAACATGATATATACTACGAAGAACCATAACAAATAACTAAATTTCAG
CAAAATTGTTTTCGATAAGCACGTTTTTTTACACAACACGGCACACTTTC
TCCTACAGGTCGACATACATGATCGTCATCATACCAGAAATACAGTTCTG
TGAGTGATACTGAAGATATAAGCTCTCTCGTGATGCCGGTCTTACGTTCT
ACGACCTTGTGCAGGGCACACTGTAAGCGCCTGCAAACAAGCACTACAAC
ACGCTTTTTTCGGACTTTTGCAGTTTTTTCGCGGCGAGTTTTTGTAACCA
AGTTGTAGAACGAATTCCTGTGAGAAGTTTGGAATATGACGCGAATTTTG
ATCATTTCGAAATGCTGAAGCTGCCGTTGAGATACGAACCCTCGAAGACG
GCGTGGTACGTTCTGGGTGCACAGCGGGCAATGAATGCACACCGGACAGT
TCTGCAGCAAACGGTGTGGTTGTTGTGTCCTCTTGTGTGCTCTTTTGTTT
GGTATTTTGCACCGCTTTGCCCGTGTTAATCGCGCTTTGTCTGTACAGTA
CACGACTGCTTTTTTTGCTTGCCGCGAGCTACATGGTTGGAATACGAGAC
TCGAGTAATTAGAGTACAGCACGATGCCGCTGGTTGGATCTTCGCCGAGT
GCCGTGCTCCTTGTTGTCACCGAGCTGTTGGTGTACTATGCTACGCGCGG
TGGGCTTCTGTTTTACACAGCAAAGTTTTGTCGTGACATCGCTTGCATCA
TGCTGCAGCTGTGCCGTGTGTTGCAGTGTACTTCATTTGTAGTACTTTTC
AATACTGTACTGTACTGTACTGTACTGTACTGTACTGTACTGTACTGTAC
TGTACTGTACTGTACTGTACTGTACTGTACTGTACTGTACTGTACTGTAC
TGTACTGTACTGTACTGTACTGTACTGTACACCACGGTCAGCCCTAGCGG
TACAGCTGTCTGTACCGGTCGACATGCGCTGTGTCTCTGTACGTCAACGT
GCTTTCTTACGCTGCTGTGGTCCGTATTGCTGTGTACTCTTTGTGCGGCT
CTCTGCCGTCTGTTTCGTGCGGCGCTACGCGAGTACATGGTGGACTTGCG
GTGCCGCTACTCCCGATGAACCCCATGCCTTTCACGAGCACGAGAAGAAC
GAGCGGGAAGAAAAGCCCCGGCGACGTTCGATAAGGCGTGATTCGACCAA
AACATGTCCGACTCTCATTCTTCTTTTTGCGCAATGTCAACATGAACGTT
TGAGTTTGTATGCGCTGTATTGCGTGAAATGAGTCCAAAAAATGAAGTTG
TGACCCCCAAAGCTCACGGAGGTAAAAAATTCCAGAATGTTACAAACCCC
TAAAAATGTACAATAATGGTCATATCTATTTTTATCATTTGTTTTCTATT
TTTCCCTCATTGGATTAATATTTTCTCCATGATCAATTTGTGCCACCGTT
TGTCATCTGAAACTCCATAATTCGTGAGATATGCAGGGAATATTTTATTA
TGGTCTTCCGTAGTATATATATATATTCTCAAAATTCATCCCCCCCAACT
CCCCCCCAATCGCTTCCTATCCAACCATGCGCCTATTTTCAACGAAACAG
CGACATCCGCTCAGCAAAGAAGAGCGAGCGGAGGTAGAGAAGGCCCTGAC
ATCGTGCACGCCGAACAGCGGTGCAGCGAGAGGCGATGCAGCAAAAGACG
GGCTAGCGTCTGACGAGACTGTGGGTTCGGAAGGAGAGGCACGGGCGGCA
CAGATGGACCTCGTAGCTGCGGTGGACTTTTTTAACACTTTTGACGCGTG
GATAGATTCCAAATACCCCGGGGATCGAGGGAGTGCTACCAAAGTCAAGG
TGGCGTTTCGAAAGGTGAGAGTTCTCCGAGCTTTTACTTCGTGTGTATTT
GTTTAATGATATATATATATATATTATTGACACTTGATGGATCTATACCT
TTACTTATTTAGTTTTGGTGGGGAAGGTGGCTACGAGCTGCAACCCCAAC
AATAACGTTTCGCTCGTGTGCGCGTGCTAGGTAAGATTTCATCCACTAAG
GTGATGCGCGGTATCATCCTCGATTCGGACCAGTTTTTCCTTGAAGAGTA
TCTTCAAGTGACTTCTAGAAACATGTTTACGGTGTAGTTTGCCTTCTCGC
GAGCGTAGCAAGCTTTGTGCCTCCTCTTTCCTCATAGGACGAAAAACGCG
GACTATACGGGTGCACTGTAGCGGCAGCTTTGCTTGTAGTTTCAGCAGGC
GAGGCGTGGAAAACCGGCAAATTGGAGGAAAACCTCCAGCTATAGTGTGT
GTTCTGCTTTCCTCCCGAAGGGACTCACTGTCGCGAGCAGGGAACCGCGG
TGTTTGCTCTGGATGCTGTTAAGGATGGTAGGGCTGCCCCGTTGAAAATC
GCAGAGTTGACGTTTGCCTCGGATGCCGTGGGCGCCTTCGTCACTCCTAG
GATCGAAAATTATCTGGAAATGTTGCGATGTGCGCTGTCGAAGAGCGGAG
TATGTGCTGAAGCTTTGTTTGCATTAGTTACACGCAACGTCTCGAACGCG
TAAGCTTCACTACCACAGCGCACAGCGGGAAGTGGAGAAGGCATTGACAC
AAGTTGCCTGACCCCTAGTTGTGATCCATTCTTCCTCTACATGCAGCATC
TCTTCTGTGAAATGAATGATCTTTGAAACGTGAATAAGCTGAAGCAAGCG
GAAAACCAACTTCCGAGTTAAGATTATCCACGCAGACGATGCACTCGACC
CAAAATACAGTCGCTGTGGCAGACCCGCTGTTGTTGGTATCTTGGCGACA
AAGCCTAGACTATGACGCTGATTGTGTTTGTTGTCGCCGTCTGCTTGCCC
TTCTTGATGCGGTCTGCTACCCCCCGATTTTGTGTACCTCTCGCAGCAAC
ATCGAGCACTGGTGGCCAATCTCTGCCTCGAAGATATTGAAGACATCGCG
CAAGCTATGCAGTAGAAGTGTAGGAGTTGTCGTTTACATATTTTGCCACC
CGCGGCTGTTAACTTTTAAGGTTACCATTGTGGTGCCAAATAGGAGATGG
GCATGTCTTCCCTCCCAATTGTTTGCGGTTGTAGCTCTCTCTCTTGGAGT
GCGATTTGCGTGCAGGGTCTGTAGGCAGGGGTGCATGTAGCATGGCAAAC
TCGTACTCCATCGTAGCGCAATTCATACCTCCCAGACTCGCCCTGCCCAT
GGCGTCTCGTCCAGGCGCATGCGTATGTAGCTAGCATGCTGAAAATGGGG
CGTGAACGCGAATTTTTATTCCAAGCACATAGTGCTGTGCCTATTTCGTT
CCACCCTAGAAAACATGTAGCTGACGTCGACGAACCGTGAATTTGGTCCC
AATTATGCACCTTGTTTGTAGGATCATTGGGGTAGCTGTTATATTCCTCC
CTGGTTTTGTACTGAGGAGGCACATGCAAGGAGATGGTTGTATACGGAAT
ATAGCACATTTCTTTTTCTATGGTGTCAACACGCGACAGTCCGGTTGGGA
TACGTTTCCTCCATCATCCACAGAGCACAATTGAGATTCCAGGTGAATTG
ACATTTTCTGTCAGGTAGGATTTTAGTCCGTGGTAAAATTGCATTTTAAA
ACAATGTGTAAGGAAGGAACGGTGTTGCTGATGATGATCGGTAGGAAATG
AAGTTTGCATATAGGACTAGTGGTGTTTATTTTGTCAGCACTCCGTGCCA
ATGATGGATAGAAGCGTTTGTATGGTCTTTTCGTTTATTTGACATGGTAC
GTGTAAACGTGAGTAATATGTTTTCTCACAACACAGTATTTTCCTTATTC
ATAATGTTCTACAATTTTCCTCTTTTTGATGTGTCTGTTTCTTCCATTGT
ATGCAGAACATATCGTGGAGCAGAGTGTTGGTACTTTTCTACCCAGTAGT
ATGTGTTGGGACAAATTCGACGTTGCCGGGGAAAGAGATTTACATGTATG
TTCAAGATGGAAGGATTTTTCTTTGTAAATGTTTCGACTGGTGACTACAT
GTTTGTGTTTGAATAAGATATATATTTTTCTTTTGATTCATGTCGCTGGA
ATATGGCATAATTTGTCTTGTTTGTTCTCTTCCATCTGAGTCTCTCTATA
TTTCGCTAAAGAATGTTTTTCTCCCTCCTGTTTCTCTTCTCTACGCTCGT
CTTTTTTTCTCGTTTCAACATATCTGTATTTACCTCATCATGAAGTATTT
CCGAATTTGTCATTCATCGTAATTTATTTTCTTTCTCGGTGTGACGAAAA
TGTGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig1996:6840..12245+

>mRNA_H-paniculata_contig1996.5098.1 ID=mRNA_H-paniculata_contig1996.5098.1|Name=mRNA_H-paniculata_contig1996.5098.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=972bp|location=Sequence derived from alignment at H-paniculata_contig1996:6840..12245+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATGAATCGGCTATTTTTCGTATACTGCGACAATTCCGTAAGGTGCG
AGGGCCGGACTTTCACCAGCCTGCTATCAGGGGAGGCCGAACGAAACAGC
TCGGCTGTGGCGATGGTGCAGCACCAGGAGACAGCGACGGAGGGATAGCG
AAGATGGATGAATCGGCTATTTTTCGTATACTGCGACAATTCCGTAAGGT
GCGAGGGCCGGACTTTCACCAGCCTGCTATCAGGGGAGGCCGAACGAAAC
AGCTCGGCTGTGGCGATGGTGCAGCACCAGGAGACAGCGACGGAGGGATA
GCGAAGCGACATCCGCTCAGCAAAGAAGAGCGAGCGGAGGTAGAGAAGGC
CCTGACATCGTGCACGCCGAACAGCGGTGCAGCGAGAGGCGATGCAGCAA
AAGACGGGCTAGCGTCTGACGAGACTGTGGGTTCGGAAGGAGAGGCACGG
GCGGCACAGATGGACCTCGTAGCTGCGGTGGACTTTTTTAACACTTTTGA
CGCGTGGATAGATTCCAAATACCCCGGGGATCGAGGGAGTGCTACCAAAG
TCAAGGTGGCGTTTCGAAAGCGACATCCGCTCAGCAAAGAAGAGCGAGCG
GAGGTAGAGAAGGCCCTGACATCGTGCACGCCGAACAGCGGTGCAGCGAG
AGGCGATGCAGCAAAAGACGGGCTAGCGTCTGACGAGACTGTGGGTTCGG
AAGGAGAGGCACGGGCGGCACAGATGGACCTCGTAGCTGCGGTGGACTTT
TTTAACACTTTTGACGCGTGGATAGATTCCAAATACCCCGGGGATCGAGG
GAGTGCTACCAAAGTCAAGGTGGCGTTTCGAAAGCAACATCGAGCACTGG
TGGCCAATCTCTGCCTCGAAGATATTGAAGACATCGCGCAAGCTATGCAG
TAGCAACATCGAGCACTGGTGGCCAATCTCTGCCTCGAAGATATTGAAGA
CATCGCGCAAGCTATGCAGTAG
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