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Homology
BLAST of mRNA_H-paniculata_contig1996.5097.1 vs. uniprot
Match: D7FIC2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIC2_ECTSI) HSP 1 Score: 103 bits (257), Expect = 2.010e-22 Identity = 66/128 (51.56%), Postives = 85/128 (66.41%), Query Frame = 1
Query: 214 GDHDGSTGLELPSDLLLKVKSGGLRRMEAERRELQGANEVAQAEAALKVAGKARRAPKVQ--DVPRSDNFRLVVLDEEXXXXXXXXAGNKSHAAEKARNFLRERVQAQKRISHGLLKARQRLGPSPHF 591
G+ + + GLELPSDLLL+VKSGGL+RMEA+ E A E A RR + + D RSDNFRLVVLDE+ +K+HAAE A+NFLR+R+ ++KR+SH L KAR+RLGPSP+F
Sbjct: 93 GEGEPADGLELPSDLLLRVKSGGLQRMEADVLE---AEEQAXXXXXXXXXXXGRRKARAKAGDASRSDNFRLVVLDEDDGGVDADDE-SKAHAAESAKNFLRDRMGSRKRVSHSLFKARKRLGPSPNF 216
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-11_001350.1 |
| Exons | 3 |
| Model size | 1078 |
| Cds size | 303 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1996.5097.1 >prot_H-paniculata_contig1996.5097.1 ID=prot_H-paniculata_contig1996.5097.1|Name=mRNA_H-paniculata_contig1996.5097.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
MEAERRELQGANEVAQAEAALKVAGKARRAPKVQDVPRSDNFRLVVLDEE
ENGGGSGGAGNKSHAAEKARNFLRERVQAQKRISHGLLKARQRLGPSPHF
* back to topmRNA from alignment at H-paniculata_contig1996:1265..3892- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig1996.5097.1 ID=mRNA_H-paniculata_contig1996.5097.1|Name=mRNA_H-paniculata_contig1996.5097.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2628bp|location=Sequence derived from alignment at H-paniculata_contig1996:1265..3892- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGCGTAACAAACCAAACGCAGATGCCACGGATGAAGAGCAGACTAGTGA
TGACGAAGCTCCGGAAGAAGTGAGTACCGCCGCGGCAACAGCACTGGCTG
GCCGGCGTAGAAAAGCTGAGCTCGACGCGCGTAAAGCCGTGCCGAAAAGG
AAGAGAGCAAGGGCTTCAACCAAAGGCAACAAGGCCGGGCAAGGTGATTC
TTTCAGCTACAAAGAGAGCGCCAAGCGGGGGGGTGGGTGGGGGGAATTGG
AAATGACTATATCATATCATGATGTAAGGCATAGCAAGCGTTTGCTGTAC
AGAAGACGGTAATTGTGATGCGTGGTTTATATTTCTTTTAAATTAAATCC
ATTTACAGTAATAAAAAACAAAATGGCCTTCCTCTGCCGAGGGCGGGGTC
ATGGGTTCATATAGGTTGATCTAGTAATAGCATTCGTTTCGGTGCGTATT
ATCGAGTAAGACTGGACACATGGTAGTCGGCACTACTTTTAAAAGAGCAA
TACTTCCGCCAAGGATATCCAAGATAAGCTGGGGCCCTGTTGTGTATGGT
CGGCCTATTAGTCACCACGCTCGTTGTTGCTGCAGAAGGCGAAGCGCAGT
CGATGTATTTTTATCTACACGGGTGCTCCTTTCCGGTATGTGTTTTAAAG
ACTTTTTCACGGAATAAGTCATTGCAAAAGTTTTCCTCCCTCTTCCGGTT
TCTTTTTGTTGGATTTATGCAAGGTGCAGGGGACCTAGACCTTGGAGACC
ACGACGGCAGCACCGGACTGGAACTTCCATCCGATTTATTGCTCAAAGTC
AAGTCTGGGGGTTTGCGGCGCATGGAGGCGGAGAGGAGAGAGTTACAAGG
AGCGAACGAGGTCGCCCAGGCAGAGGCTGCATTAAAGGTAGCTGGTAAAG
CTCGACGCGCGCCCAAAGTTCAAGATGTGCCACGAAGGTGGGTTCAAAAA
GAGTAAGAGAAGGGTACAGCCGAGAGGGGGTGATTTTTTTTCTGCTCAAA
ACCATCATGTAGCAAAATCCAGCGAATCTATTCGGAGATTTTCAGATATT
GTCTGTGTCTTCCGAGTCTGTTTTATCGCTGTATTTCGTCCTTTGGGGTT
ACCACATATGCATACATCTGTACACACACTGTGAAGTTAGCTTGCTACGC
TGAACGAGCCAAGCGTAACCGTTTGCGGCGTTTTCTCCGGGTTTTTTTCG
GCTTATTATATATATATCGATTTGGAACAGGTTCAGTCCTCAACCGTCGA
GTCTTTTTTCGTCTGTATTTCACTTCTTATGGTTACCGCATCGACCAGTC
GATATCCATTACAATTATTTTCGCCAAGCTTGAGTCGCACCCTGTATTGT
CATTTCAGAAGCATTGAAATATGTTCATCTTATCTTCAGACAATTACTTT
CGAGACACTGTAACGATTTTAGCGTATACTCGGCACGCGCGCTTTTGAGC
AGCTTGCTGCTTTGCCCACCGCCGTTGAAAATTTTTACCAGTTGCACGCG
TTTCTGCTTCATCGAGAAGTCGAGATACTCTAATGTAAATAGCTACATAA
GTGGAAAATCCCACTCTGCGTGCACGAGCAGTATGCATTTCGGTTTTCGT
TACAATGGGCCAAACCAACGCCCACAATCATTGAATGTGTTCGATCTATA
GCGCTTGCTGTACTGAATAGGGTTAGGTTCTGGTTGATAAAACATGAAAC
GGTTGAACGGTTGGAGGTTCGCTTTTGCTCTGCAAATATAGGAAACCGGT
TAATAGGACCCCTCGACTAGCCGGCAATCGTATTAACACGGCTGAAGCTC
ATCGTTCCTCATCCCGTGCCTACCTCTACATCCCGCATGAAGCAGAAGCG
GCTGCAACTGTGTCCTTGCACACCTCATCCACCTCCGATAACCCCCGAAG
ATATTGACTTGCTTTCTCCCTGCCCGATCCCCGCTTCTTGTAATTACAAT
TTGTCAGTGACAACTTTCGACTTGTCGTACTGGATGAAGAAGAGAATGGC
GGGGGTAGCGGCGGTGCGGGGAATAAGAGTCATGCCGCAGAAAAAGCCAG
GAATTTTCTGCGCGAGCGTGTGCAGGCACAAAAGCGCATCAGCCACGGCT
TGTTGAAGGCACGCCAACGTCTGGGACCGTCTCCGCATTTCTGATTTACT
TGGGTACACGGTTGTAGAAGTGAGTAGCGTCGGTGTTTGTTCGCCCTCAT
TTCTATAAGTCGCTTGTGCCTTTTGTTGTTTTCATCTTACCTACTCTCTG
GATTCGACTTTGTCTAGTAAGAGTTGAGTTGTAAATGTGCCACACAATGA
CATCACGTATGAACCTTGGCGCCCCTGTTTGTGTAGATGATGTCATACCA
ATAAAGACATCGGACGGGTCACGTAGGCTTTCAGTGTGACGAGGGAGCAT
GATACAGGTTTCGTCATCGATTGTTGGGAAGCTCGATTACTGGCAACACC
TTCGAATATTCATTTGTCAAGGTGGGTGCCATGGAATGGGCTTTGCTTGT
TGAGTTCCTGTTCATGTTACGCGAGTCGGAGTAATCTAACCCAAAGAACG
ACCCAACAAAAAAAGGAAACACCCCTTCTCGGGGACCAGGATATGAGCAA
ATAGAAAATACTGGACTTCGGTATGGAC back to topCoding sequence (CDS) from alignment at H-paniculata_contig1996:1265..3892- >mRNA_H-paniculata_contig1996.5097.1 ID=mRNA_H-paniculata_contig1996.5097.1|Name=mRNA_H-paniculata_contig1996.5097.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig1996:1265..3892- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGCGGAGAGGAGAGAGTTACAAGGAGCGAACGAGGTCGCCCAGGC
AGAGGCTGCATTAAAGGTAGCTGGTAAAGCTCGACGCGCGCCCAAAGTTC
AAGATGTGCCACGAAGATGGAGGCGGAGAGGAGAGAGTTACAAGGAGCGA
ACGAGGTCGCCCAGGCAGAGGCTGCATTAAAGGTAGCTGGTAAAGCTCGA
CGCGCGCCCAAAGTTCAAGATGTGCCACGAAGTGACAACTTTCGACTTGT
CGTACTGGATGAAGAAGAGAATGGCGGGGGTAGCGGCGGTGCGGGGAATA
AGAGTCATGCCGCAGAAAAAGCCAGGAATTTTCTGCGCGAGCGTGTGCAG
GCACAAAAGCGCATCAGCCACGGCTTGTTGAAGGCACGCCAACGTCTGGG
ACCGTCTCCGCATTTCTGATGACAACTTTCGACTTGTCGTACTGGATGAA
GAAGAGAATGGCGGGGGTAGCGGCGGTGCGGGGAATAAGAGTCATGCCGC
AGAAAAAGCCAGGAATTTTCTGCGCGAGCGTGTGCAGGCACAAAAGCGCA
TCAGCCACGGCTTGTTGAAGGCACGCCAACGTCTGGGACCGTCTCCGCAT
TTCTGA back to top
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