prot_H-paniculata_contig19954.5095.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig19954.5095.1
Unique Nameprot_H-paniculata_contig19954.5095.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length95
Homology
BLAST of mRNA_H-paniculata_contig19954.5095.1 vs. uniprot
Match: A0A396JJF4_MEDTR (Putative RNA-directed DNA polymerase n=3 Tax=Medicago truncatula TaxID=3880 RepID=A0A396JJF4_MEDTR)

HSP 1 Score: 78.2 bits (191), Expect = 8.350e-15
Identity = 41/96 (42.71%), Postives = 57/96 (59.38%), Query Frame = 0
Query:    1 MRVASLGGSSYVIITVDDYSRFQAVKFIKKMSDATAALLSYIAEYITPKGLKIGAIHADNRGRFDGD-FRVKLDEHGISHELTPPDTPQYNGVFER 95
            +  ASL GS Y ++ VDDYSR+  VKFIK    A     S+  +  + K LKI  + +D+ G F+ + F +  ++HGI HE + P TPQ NGV ER
Sbjct:  863 VNTASLYGSKYGLVIVDDYSRWTWVKFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVER 958          
BLAST of mRNA_H-paniculata_contig19954.5095.1 vs. uniprot
Match: A0A5D3E4L4_CUCME (Gag-pol polyprotein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3E4L4_CUCME)

HSP 1 Score: 75.9 bits (185), Expect = 5.270e-14
Identity = 43/96 (44.79%), Postives = 50/96 (52.08%), Query Frame = 0
Query:    1 MRVASLGGSSYVIITVDDYSRFQAVKFIKKMSDATAALLSYIAEYITPKGLKIGAIHADNRGRFDG-DFRVKLDEHGISHELTPPDTPQYNGVFER 95
            M+  SLGG  YV++ VDDYSRF  V F+K  SD     +S        KG KI  I +D+   FD  D        GI HE T P TPQ NGV ER
Sbjct:  342 MQTESLGGKKYVLVVVDDYSRFTWVPFLKGKSDTVKLCISLCLNLQGEKGQKIIRIRSDHGKEFDNEDLNNFCQPKGIHHEFTAPITPQQNGVVER 437          
BLAST of mRNA_H-paniculata_contig19954.5095.1 vs. uniprot
Match: A0A5D3CS19_CUCME (Gag-pol polyprotein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3CS19_CUCME)

HSP 1 Score: 75.9 bits (185), Expect = 5.320e-14
Identity = 43/96 (44.79%), Postives = 51/96 (53.12%), Query Frame = 0
Query:    1 MRVASLGGSSYVIITVDDYSRFQAVKFIKKMSDATAALLSYIAEYITPKGLKIGAIHADNRGRFDG-DFRVKLDEHGISHELTPPDTPQYNGVFER 95
            M+  SLGG  YV++ VDDYSRF  V+F+K  SD     +S        KG KI  I +D+   FD  D        GI HEL  P TPQ NGV ER
Sbjct:  471 MQTESLGGKKYVLVVVDDYSRFTWVEFLKGKSDTGKLCISLCLNLQHEKGQKIIRIRSDHEKEFDNEDLNNFCQIEGIHHELAAPITPQQNGVVER 566          
BLAST of mRNA_H-paniculata_contig19954.5095.1 vs. uniprot
Match: A0A699R842_TANCI (Putative ribonuclease H-like domain-containing protein (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699R842_TANCI)

HSP 1 Score: 72.0 bits (175), Expect = 1.710e-13
Identity = 34/96 (35.42%), Postives = 54/96 (56.25%), Query Frame = 0
Query:    1 MRVASLGGSSYVIITVDDYSRFQAVKFIKKMSDATAALLSYIAEYITPKGLKIGAIHADNRGRFDGD-FRVKLDEHGISHELTPPDTPQYNGVFER 95
            MR+AS+ G  Y+++ VDDYSR+  V+F++   +AT  +++++          +  I  DN   F     +V  D  GISH+++   TPQ NGV ER
Sbjct:   72 MRIASINGKRYILVIVDDYSRYTWVRFLRSKDEATEVIITFLKRITVLLQSPVIIIRTDNGTEFKNQVLKVYFDSVGISHQMSSVQTPQQNGVVER 167          
BLAST of mRNA_H-paniculata_contig19954.5095.1 vs. uniprot
Match: A0A5D3BZJ1_CUCME (Peptidase aspartic, catalytic n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3BZJ1_CUCME)

HSP 1 Score: 71.6 bits (174), Expect = 2.040e-13
Identity = 40/95 (42.11%), Postives = 48/95 (50.53%), Query Frame = 0
Query:    1 MRVASLGGSSYVIITVDDYSRFQAVKFIKKMSDATAALLSYIAEYITPKGLKIGAIHADNRGRFDG-DFRVKLDEHGISHELTPPDTPQYNGVFE 94
            M+  SLGG  YV++ VDDYSRF  V+F+K   D     +S        K  KI  IH+D+   FD  D        GI HE   P TPQ NGV E
Sbjct:   94 MQTESLGGKKYVLVVVDDYSRFTWVRFLKGKLDTVKLCISLCLNLQREKRQKIIRIHSDHGKEFDNEDLNNFCQTEGIHHEFAAPITPQQNGVVE 188          
BLAST of mRNA_H-paniculata_contig19954.5095.1 vs. uniprot
Match: A0A5D3BA69_CUCME (Gag-pol polyprotein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3BA69_CUCME)

HSP 1 Score: 73.9 bits (180), Expect = 2.460e-13
Identity = 40/96 (41.67%), Postives = 50/96 (52.08%), Query Frame = 0
Query:    1 MRVASLGGSSYVIITVDDYSRFQAVKFIKKMSDATAALLSYIAEYITPKGLKIGAIHADNRGRFDG-DFRVKLDEHGISHELTPPDTPQYNGVFER 95
            M+  SLGG  YV++ VDDYS+F  V+F+K+  D     +S        KG KI  I +D+   FD  D        GI HE   P TPQ NGV ER
Sbjct:  321 MQTESLGGKKYVLVVVDDYSKFTWVRFLKEKFDTVKLCISLCLNLQREKGQKIIRIRSDHGKEFDNEDLNNLCQTEGIHHEFAAPITPQQNGVVER 416          
BLAST of mRNA_H-paniculata_contig19954.5095.1 vs. uniprot
Match: A0A5D3DQT9_CUCME (Gag/pol polyprotein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3DQT9_CUCME)

HSP 1 Score: 73.9 bits (180), Expect = 2.500e-13
Identity = 41/96 (42.71%), Postives = 49/96 (51.04%), Query Frame = 0
Query:    1 MRVASLGGSSYVIITVDDYSRFQAVKFIKKMSDATAALLSYIAEYITPKGLKIGAIHADNRGRFDG-DFRVKLDEHGISHELTPPDTPQYNGVFER 95
            M+  SLG   YV++ VDDYSRF  V+F+K  SD     +S        KG KI  I +D+   FD  D        GI HE   P TPQ NGV ER
Sbjct:  353 MKTESLGRKKYVLVVVDDYSRFTRVRFLKGKSDTVKLCISLYLNLQREKGQKIIRIRSDHGKEFDNEDLNNFCQTEGIHHEFVAPITPQQNGVVER 448          
BLAST of mRNA_H-paniculata_contig19954.5095.1 vs. uniprot
Match: A0A151SK87_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SK87_CAJCA)

HSP 1 Score: 73.9 bits (180), Expect = 2.560e-13
Identity = 38/95 (40.00%), Postives = 54/95 (56.84%), Query Frame = 0
Query:    2 RVASLGGSSYVIITVDDYSRFQAVKFIKKMSDATAALLSYIAEYITPKGLKIGAIHADNRGRFDGD-FRVKLDEHGISHELTPPDTPQYNGVFER 95
            R  SLGG++Y ++ +DDYSRF  V FI    +A  A           K LKI ++ +D+ G F  + F+   +E+GI+H  + P TPQ NGV ER
Sbjct:  723 RTKSLGGNTYALVLIDDYSRFTWVAFISHKDNAFKAFRIISKRIQNEKDLKIKSLRSDHGGEFQNESFQTFCEENGINHNFSVPRTPQQNGVVER 817          
BLAST of mRNA_H-paniculata_contig19954.5095.1 vs. uniprot
Match: W8AQ86_CERCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Ceratitis capitata TaxID=7213 RepID=W8AQ86_CERCA)

HSP 1 Score: 73.6 bits (179), Expect = 3.480e-13
Identity = 39/96 (40.62%), Postives = 55/96 (57.29%), Query Frame = 0
Query:    1 MRVASLGGSSYVIITVDDYSRFQAVKFIKKMSDATAALLSYIAEYITPKGLKIGAIHADNRGRF-DGDFRVKLDEHGISHELTPPDTPQYNGVFER 95
            M + S+GG+SY +  +DDYSR+ AV FIK+ S+A      + A      G KI ++ +DN   F + +F   L E GI H+ T   +PQ NGV ER
Sbjct:  489 MGIGSVGGASYFVTFIDDYSRYTAVYFIKRKSEALNMFKLFTASAEKQTGRKIKSVRSDNGREFVNSEFEKYLSERGIRHQTTVAYSPQQNGVAER 584          
BLAST of mRNA_H-paniculata_contig19954.5095.1 vs. uniprot
Match: A0A5D3CAR9_CUCME (Gag-pol polyprotein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3CAR9_CUCME)

HSP 1 Score: 72.0 bits (175), Expect = 1.150e-12
Identity = 41/96 (42.71%), Postives = 50/96 (52.08%), Query Frame = 0
Query:    1 MRVASLGGSSYVIITVDDYSRFQAVKFIKKMSDATAALLSYIAEYITPKGLKIGAIHADNRGRFDG-DFRVKLDEHGISHELTPPDTPQYNGVFER 95
            M+  SLGG  YV++ VDDYSRF  V+F+K+ SD     +S        K  KI  I +D+   FD  D        GI HE T   TPQ NGV ER
Sbjct:  424 MQTKSLGGMKYVLVVVDDYSRFTWVRFLKEKSDTVKLCISLCLNLQREKRQKIIRIRSDHGKEFDNEDLNNFCHTEGIHHEFTASITPQQNGVVER 519          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19954.5095.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A396JJF4_MEDTR8.350e-1542.71Putative RNA-directed DNA polymerase n=3 Tax=Medic... [more]
A0A5D3E4L4_CUCME5.270e-1444.79Gag-pol polyprotein n=1 Tax=Cucumis melo var. maku... [more]
A0A5D3CS19_CUCME5.320e-1444.79Gag-pol polyprotein n=1 Tax=Cucumis melo var. maku... [more]
A0A699R842_TANCI1.710e-1335.42Putative ribonuclease H-like domain-containing pro... [more]
A0A5D3BZJ1_CUCME2.040e-1342.11Peptidase aspartic, catalytic n=1 Tax=Cucumis melo... [more]
A0A5D3BA69_CUCME2.460e-1341.67Gag-pol polyprotein n=1 Tax=Cucumis melo var. maku... [more]
A0A5D3DQT9_CUCME2.500e-1342.71Gag/pol polyprotein n=1 Tax=Cucumis melo var. maku... [more]
A0A151SK87_CAJCA2.560e-1340.00Retrovirus-related Pol polyprotein from transposon... [more]
W8AQ86_CERCA3.480e-1340.63Retrovirus-related Pol polyprotein from transposon... [more]
A0A5D3CAR9_CUCME1.150e-1242.71Gag-pol polyprotein n=1 Tax=Cucumis melo var. maku... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 2..95
e-value: 2.0E-11
score: 45.6
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 2..95
e-value: 2.4E-11
score: 43.9
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 1..95
score: 13.977
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 5..95

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19954contigH-paniculata_contig19954:3689..3973 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19954.5095.1mRNA_H-paniculata_contig19954.5095.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig19954 3659..3973 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig19954.5095.1 ID=prot_H-paniculata_contig19954.5095.1|Name=mRNA_H-paniculata_contig19954.5095.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=95bp
MRVASLGGSSYVIITVDDYSRFQAVKFIKKMSDATAALLSYIAEYITPKG
LKIGAIHADNRGRFDGDFRVKLDEHGISHELTPPDTPQYNGVFER
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR001584Integrase_cat-core
IPR012337RNaseH-like_sf