mRNA_H-paniculata_contig19941.5091.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig19941.5091.1
Unique NamemRNA_H-paniculata_contig19941.5091.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig19941.5091.1 vs. uniprot
Match: D7FQ09_ECTSI (Nuclear transcription factor Y subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ09_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 1.640e-30
Identity = 61/69 (88.41%), Postives = 63/69 (91.30%), Query Frame = 1 
Query:    1 PTYVNAKQYRRIIKRREARAKLEARKKVPQQRKVCSFLHKSRHDHACRRVRGPGGRFLTKAELDQYRKQ 207
            PTYVNAKQYRRI+KRREARAKLEAR+KV  QRK   FLHKSRHDHA RRVRGPGGRFLTKAELDQYRKQ
Sbjct:   40 PTYVNAKQYRRIMKRREARAKLEARRKVAPQRKT--FLHKSRHDHAMRRVRGPGGRFLTKAELDQYRKQ 106
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BLAST of mRNA_H-paniculata_contig19941.5091.1 vs. uniprot
Match: A0A6H5KD26_9PHAE (Nuclear transcription factor Y subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD26_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 1.670e-29
Identity = 60/69 (86.96%), Postives = 63/69 (91.30%), Query Frame = 1 
Query:    1 PTYVNAKQYRRIIKRREARAKLEARKKVPQQRKVCSFLHKSRHDHACRRVRGPGGRFLTKAELDQYRKQ 207
            PTYVNAKQYRRI+KRREARAKLEAR+KV  QRK   FLHKSRHDHA RRVRGPGGRFLTKAEL+QYRKQ
Sbjct:   88 PTYVNAKQYRRIMKRREARAKLEARRKVAPQRKT--FLHKSRHDHAMRRVRGPGGRFLTKAELEQYRKQ 154
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BLAST of mRNA_H-paniculata_contig19941.5091.1 vs. uniprot
Match: A0A835ZFN6_9STRA (Nuclear transcription factor Y subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFN6_9STRA)

HSP 1 Score: 102 bits (255), Expect = 2.330e-24
Identity = 52/63 (82.54%), Postives = 57/63 (90.48%), Query Frame = 1 
Query:    1 PTYVNAKQYRRIIKRREARAKLEARKKVPQQRKVCSFLHKSRHDHACRRVRGPGGRFLTKAEL 189
            PTYVNAKQY+RI+KRREARAKLE R+++P  RK  SFLHKSRHDHACRR RGPGGRFLTKAEL
Sbjct:   92 PTYVNAKQYKRILKRREARAKLEERRRIPAARK--SFLHKSRHDHACRRKRGPGGRFLTKAEL 152
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BLAST of mRNA_H-paniculata_contig19941.5091.1 vs. uniprot
Match: A0A7R9U4I3_9STRA (Nuclear transcription factor Y subunit n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4I3_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 2.420e-23
Identity = 48/68 (70.59%), Postives = 59/68 (86.76%), Query Frame = 1 
Query:    1 PTYVNAKQYRRIIKRREARAKLEARKKVPQQRKVCSFLHKSRHDHACRRVRGPGGRFLTKAELDQYRK 204
            PTYVNAKQYRRI+KRR+ARAKLE++ K P ++   ++LHKSRH+HACRR RGP GRFLTKAEL++ RK
Sbjct:  157 PTYVNAKQYRRILKRRQARAKLESKWKAPSRK---TYLHKSRHEHACRRPRGPSGRFLTKAELEELRK 221
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BLAST of mRNA_H-paniculata_contig19941.5091.1 vs. uniprot
Match: A0A7S0XLV8_9STRA (Nuclear transcription factor Y subunit n=1 Tax=Chrysocystis fragilis TaxID=1411660 RepID=A0A7S0XLV8_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.530e-20
Identity = 46/69 (66.67%), Postives = 56/69 (81.16%), Query Frame = 1 
Query:    1 PTYVNAKQYRRIIKRREARAKLEARKKVPQQRKVCSFLHKSRHDHACRRVRGPGGRFLTKAELDQYRKQ 207
            PTYVN+KQY RI+KRREARAKLE+  K+ +++   S+LH+SRH HACRR RGPGGRFLTKAEL   + Q
Sbjct:   76 PTYVNSKQYGRIVKRREARAKLESLWKISERK---SYLHESRHKHACRRKRGPGGRFLTKAELAALKDQ 141
[Close]
BLAST of mRNA_H-paniculata_contig19941.5091.1 vs. uniprot
Match: A0A7S1UIV2_9STRA (Nuclear transcription factor Y subunit n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UIV2_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.640e-20
Identity = 45/64 (70.31%), Postives = 54/64 (84.38%), Query Frame = 1 
Query:    1 PTYVNAKQYRRIIKRREARAKLEARKKVPQQRKVCSFLHKSRHDHACRRVRGPGGRFLTKAELD 192
            PT+VNAKQYRRI+KRR ARAK+E + KVP ++   ++LHKSRH HACRR RGP GRFLTKAEL+
Sbjct:  143 PTFVNAKQYRRILKRRAARAKMEEKYKVPNRK---AYLHKSRHQHACRRPRGPTGRFLTKAELE 203
[Close]
BLAST of mRNA_H-paniculata_contig19941.5091.1 vs. uniprot
Match: A0A7S2SH64_9STRA (Nuclear transcription factor Y subunit (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SH64_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 8.800e-19
Identity = 44/68 (64.71%), Postives = 53/68 (77.94%), Query Frame = 1 
Query:    1 PTYVNAKQYRRIIKRREARAKLEARKKVPQQRKVCSFLHKSRHDHACRRVRGPGGRFLTKAELDQYRK 204
            PTYVNAKQY RI+KRR+ARAKLE R+++  QRK   + H+SRH HACRR RGP G+FLTK EL +  K
Sbjct:   62 PTYVNAKQYERIMKRRQARAKLEERRRLASQRK--GYQHESRHKHACRRPRGPDGKFLTKVELKELAK 127
[Close]
BLAST of mRNA_H-paniculata_contig19941.5091.1 vs. uniprot
Match: A0A1Y1Y7R5_9FUNG (Transcriptional activator HAP2 (Fragment) n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y7R5_9FUNG)

HSP 1 Score: 80.9 bits (198), Expect = 1.120e-18
Identity = 43/68 (63.24%), Postives = 51/68 (75.00%), Query Frame = 1 
Query:    1 PTYVNAKQYRRIIKRREARAKLEARKKVPQQRKVCSFLHKSRHDHACRRVRGPGGRFLTKAELDQYRK 204
            P YVNAKQY RI+KRR ARAKLE R ++ + RK   +LH+SRH HA RR RGPGGRFLT AE+ +  K
Sbjct:    7 PLYVNAKQYHRILKRRAARAKLEERTRIQRSRKP--YLHESRHRHAMRRPRGPGGRFLTAAEIAELEK 72
[Close]
BLAST of mRNA_H-paniculata_contig19941.5091.1 vs. uniprot
Match: A0A1Y2HZA4_9FUNG (Transcriptional activator HAP2 (Fragment) n=1 Tax=Catenaria anguillulae PL171 TaxID=765915 RepID=A0A1Y2HZA4_9FUNG)

HSP 1 Score: 80.5 bits (197), Expect = 1.400e-18
Identity = 44/63 (69.84%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:    1 PTYVNAKQYRRIIKRREARAKLEARKKVPQQRKVCSFLHKSRHDHACRRVRGPGGRFLTKAEL 189
            P YVNAKQY RI+KRR ARA+LEA  K  + RK   +LH+SRH HA RR RGPGGRFLTKAEL
Sbjct:    7 PMYVNAKQYHRILKRRAARARLEAELKGARSRKP--YLHESRHKHAMRRPRGPGGRFLTKAEL 67
[Close]
BLAST of mRNA_H-paniculata_contig19941.5091.1 vs. uniprot
Match: A0A1Y1Y6R6_9FUNG (Transcriptional activator HAP2 n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y6R6_9FUNG)

HSP 1 Score: 80.5 bits (197), Expect = 3.350e-18
Identity = 43/68 (63.24%), Postives = 51/68 (75.00%), Query Frame = 1 
Query:    1 PTYVNAKQYRRIIKRREARAKLEARKKVPQQRKVCSFLHKSRHDHACRRVRGPGGRFLTKAELDQYRK 204
            P YVNAKQY RI+KRR ARAKLE R ++ + RK   +LH+SRH HA RR RGPGGRFLT AE+ +  K
Sbjct:   18 PLYVNAKQYHRILKRRAARAKLEERNRIQRNRKP--YLHESRHRHAMRRPRGPGGRFLTAAEIAELDK 83
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig19941.5091.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ09_ECTSI1.640e-3088.41Nuclear transcription factor Y subunit n=1 Tax=Ect... [more]
A0A6H5KD26_9PHAE1.670e-2986.96Nuclear transcription factor Y subunit n=1 Tax=Ect... [more]
A0A835ZFN6_9STRA2.330e-2482.54Nuclear transcription factor Y subunit n=1 Tax=Tri... [more]
A0A7R9U4I3_9STRA2.420e-2370.59Nuclear transcription factor Y subunit n=2 Tax=Pin... [more]
A0A7S0XLV8_9STRA1.530e-2066.67Nuclear transcription factor Y subunit n=1 Tax=Chr... [more]
A0A7S1UIV2_9STRA1.640e-2070.31Nuclear transcription factor Y subunit n=2 Tax=Pha... [more]
A0A7S2SH64_9STRA8.800e-1964.71Nuclear transcription factor Y subunit (Fragment) ... [more]
A0A1Y1Y7R5_9FUNG1.120e-1863.24Transcriptional activator HAP2 (Fragment) n=1 Tax=... [more]
A0A1Y2HZA4_9FUNG1.400e-1869.84Transcriptional activator HAP2 (Fragment) n=1 Tax=... [more]
A0A1Y1Y6R6_9FUNG3.350e-1863.24Transcriptional activator HAP2 n=1 Tax=Basidiobolu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig19941contigH-paniculata_contig19941:2569..3477 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.7
Seed ortholog evalue4.3e-24
Seed eggNOG ortholog2880.D7FQ09
Preferred nameHAP2
KEGG koko:K08064
KEGG Pathwayko04612,ko05152,map04612,map05152
Hectar predicted targeting categoryother localisation
GOsGO:0000429,GO:0000436,GO:0000976,GO:0000977,GO:0000978,GO:0000979,GO:0000981,GO:0000982,GO:0000987,GO:0001012,GO:0001046,GO:0001047,GO:0001067,GO:0001077,GO:0001228,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005667,GO:0006109,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006725,GO:0006807,GO:0006873,GO:0006875,GO:0006879,GO:0006950,GO:0007154,GO:0007584,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009267,GO:0009605,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009991,GO:0010106,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016070,GO:0016602,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019725,GO:0030003,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0032774,GO:0032991,GO:0033217,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0042221,GO:0042592,GO:0042594,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043457,GO:0043467,GO:0043565,GO:0043618,GO:0043620,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044798,GO:0045893,GO:0045935,GO:0045944,GO:0045990,GO:0045991,GO:0046483,GO:0046916,GO:0048518,GO:0048522,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0060255,GO:0065007,GO:0065008,GO:0070887,GO:0071496,GO:0071704,GO:0080090,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:0098771,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2001141
EggNOG free text desc.DNA-binding transcription factor activity
EggNOG OGsCOG5224@1,KOG1561@2759
Ec32 ortholog descriptionHistone-like transcription factor, NF-YA subunit
Ec32 orthologEc-01_007920.1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03000
Exons2
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929502.9607093-CDS-H-paniculata_contig19941:2568..26701622929502.9607093-CDS-H-paniculata_contig19941:2568..2670Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19941 2569..2670 -
1691480889.1822464-CDS-H-paniculata_contig19941:2568..26701691480889.1822464-CDS-H-paniculata_contig19941:2568..2670Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19941 2569..2670 -
1622929502.9706786-CDS-H-paniculata_contig19941:3372..34771622929502.9706786-CDS-H-paniculata_contig19941:3372..3477Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19941 3373..3477 -
1691480889.1967332-CDS-H-paniculata_contig19941:3372..34771691480889.1967332-CDS-H-paniculata_contig19941:3372..3477Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig19941 3373..3477 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig19941.5091.1prot_H-paniculata_contig19941.5091.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig19941 2569..3477 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig19941.5091.1

>prot_H-paniculata_contig19941.5091.1 ID=prot_H-paniculata_contig19941.5091.1|Name=mRNA_H-paniculata_contig19941.5091.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=69bp
PTYVNAKQYRRIIKRREARAKLEARKKVPQQRKVCSFLHKSRHDHACRRV
RGPGGRFLTKAELDQYRKQ
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mRNA from alignment at H-paniculata_contig19941:2569..3477-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig19941.5091.1 ID=mRNA_H-paniculata_contig19941.5091.1|Name=mRNA_H-paniculata_contig19941.5091.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=909bp|location=Sequence derived from alignment at H-paniculata_contig19941:2569..3477- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCACGTACGTGAACGCGAAGCAATACCGGCGTATCATCAAGCGGAGGGA
AGCGCGGGCAAAGTTGGAGGCCCGCAAGAAGGTTCCGCAACAGCGGAAGG
TGTGTGTGTATGTGTGTCAAGGTGTGTGGAGGTGTGTCAAGGTGGAGATG
TGTCAAGGTGGAGATGTGTCAAGGTGGAGGTGGAGGTGTTTTCCAATTAT
TTCTGTTTTCTTTTGATTTTCCCCCCGTTTTTATCTTTGTTTTACATTAG
AATGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTTTTCCGCAATGTCTCC
GAAAAAGCAGCCTTGGTTTTTGGCTTAACTCATTAGGCACCGGCCTTTGA
AACGGCCAAAAGATCTATGTGCCAAAGACCAATCGTAGAAAACGAATTTA
CCCTACATCATGCCTCGACAGCTGGTTAGTACATCTCTGATGCAAAAAGG
ACTGTTTTGTTGTAACGGCCAGATATTAAACAAGCGCTCCATTGTTCTGA
TTAGGAGGTTAGAAGCTCCTACGGTGTCAAGGGCGGTCCAACAGGCGTTG
TTTGGTGTTACACCCCGGAACCATGAAAAAAACGATTATAGATATATTTA
TACAAGTAGATCTTAATTTTTGTTTTTCATTTGTAAATGGTTGGGCGTTT
TTTTGTGCATATTGAGTAGTTCTACGTATGGTAGATCAGTTTTTCTTTGT
AAAAAATTGGCAACGTCTTGTGCAATATATCATTAGTTTAGAACCTGGAT
TTTTTGTCGTTGTAAATATACCTTATGACCGTCCTGCGTATTCGCCTGCT
TCCCCAGTCCTTCCTACACAAGTCTCGGCATGACCACGCCTGCCGACGGG
TGCGCGGGCCAGGGGGGCGCTTCCTGACCAAGGCGGAGCTAGACCAATAC
CGGAAGCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig19941:2569..3477-

>mRNA_H-paniculata_contig19941.5091.1 ID=mRNA_H-paniculata_contig19941.5091.1|Name=mRNA_H-paniculata_contig19941.5091.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at H-paniculata_contig19941:2569..3477- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCACGTACGTGAACGCGAAGCAATACCGGCGTATCATCAAGCGGAGGGA
AGCGCGGGCAAAGTTGGAGGCCCGCAAGAAGGTTCCGCAACAGCGGAAGG
TGTGTCCCACGTACGTGAACGCGAAGCAATACCGGCGTATCATCAAGCGG
AGGGAAGCGCGGGCAAAGTTGGAGGCCCGCAAGAAGGTTCCGCAACAGCG
GAAGGTGTGTTCCTTCCTACACAAGTCTCGGCATGACCACGCCTGCCGAC
GGGTGCGCGGGCCAGGGGGGCGCTTCCTGACCAAGGCGGAGCTAGACCAA
TACCGGAAGCAGTCCTTCCTACACAAGTCTCGGCATGACCACGCCTGCCG
ACGGGTGCGCGGGCCAGGGGGGCGCTTCCTGACCAAGGCGGAGCTAGACC
AATACCGGAAGCAG
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