mRNA_H-paniculata_contig10799.509.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10799.509.1
Unique NamemRNA_H-paniculata_contig10799.509.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig10799.509.1 vs. uniprot
Match: D8LEH7_ECTSI (Proteasome endopeptidase complex n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEH7_ECTSI)

HSP 1 Score: 331 bits (849), Expect = 4.230e-107
Identity = 165/211 (78.20%), Postives = 187/211 (88.63%), Query Frame = 3 
Query:   99 SFSALLALLVIQSPSGCRATTLVAARFDKGIVIGADSRTSQGSFVANRLTDKITSVYPGIFLARSGSSADTQFVAEVIESKLDAYRTEFGRPPTVRAAATLTRNLCYANKDQLSAGVICAGWDAREGGAVFAIPQGGSFLEQPFAVSGSGSMYALGYCDDHLRPDLGREDCVRHVQAALEMAVSRDGASGGIIRLCVVTARGVERWTVVPG 731
            +F+A    L++ +     ATTLVAARFD G+VIGADSRTSQGSFVAN  TDKIT V PG+FLARSGSSADTQFVA VIE+KL+AYRTEFGR PTVRAAAT TRNLCYANKDQLSAG+ICAGWD+REGG+VF++PQGGS LEQPFAVSGSG++YALGYCDD+LRP LGR++CV HV+ ALEMAV RDGASGG+IRLCVV+A GVERWTVVPG
Sbjct:    4 AFAAAALALLVAAAGLVDATTLVAARFDGGVVIGADSRTSQGSFVANSGTDKITPVSPGVFLARSGSSADTQFVAGVIEAKLEAYRTEFGRYPTVRAAATATRNLCYANKDQLSAGIICAGWDSREGGSVFSVPQGGSLLEQPFAVSGSGAVYALGYCDDNLRPGLGRDECVSHVRTALEMAVRRDGASGGVIRLCVVSADGVERWTVVPG 214
[Close]
BLAST of mRNA_H-paniculata_contig10799.509.1 vs. uniprot
Match: A0A1Y1WB45_9FUNG (Proteasome subunit beta n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1WB45_9FUNG)

HSP 1 Score: 216 bits (550), Expect = 4.890e-63
Identity = 98/193 (50.78%), Postives = 144/193 (74.61%), Query Frame = 3 
Query:  156 TTLVAARFDKGIVIGADSRTSQGSFVANRLTDKITSVYPGIFLARSGSSADTQFVAEVIESKLDAYRTEFGRPPTVRAAATLTRNLCYANKDQLSAGVICAGWDAREGGAVFAIPQGGSFLEQPFAVSGSGSMYALGYCDDHLRPDLGREDCVRHVQAALEMAVSRDGASGGIIRLCVVTARGVERWTVVPGE 734
            TT++A +FD G+V+GADSRT+ G+++ANR+TDK+T ++  I+  RSGS+ADTQ VA++++  +  Y  + G  PTV+ AA+L + +CY NK+ LSAG+I AGWD R+G +V+ IP GGS   +PFA+ GSGS Y  GYCD   RPDL R++C+  V+ ++ +A++RDG+SGG++RL V+T  GVER   VPG+
Sbjct:   13 TTIMAVQFDGGVVVGADSRTTTGAYIANRVTDKLTKIHDRIYCCRSGSAADTQAVADIVQYHMQMYTAQHGEAPTVKVAASLFQEICYQNKNNLSAGIIVAGWDERDGASVYNIPLGGSLHREPFAIGGSGSTYIYGYCDKVFRPDLSRDECIEFVKNSVSLAMTRDGSSGGVVRLAVITKDGVER-QFVPGD 204
[Close]
BLAST of mRNA_H-paniculata_contig10799.509.1 vs. uniprot
Match: A0A8H7UIW0_MORIS (Proteasome subunit beta n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7UIW0_MORIS)

HSP 1 Score: 213 bits (543), Expect = 5.040e-62
Identity = 100/193 (51.81%), Postives = 142/193 (73.58%), Query Frame = 3 
Query:  156 TTLVAARFDKGIVIGADSRTSQGSFVANRLTDKITSVYPGIFLARSGSSADTQFVAEVIESKLDAYRTEFGRPPTVRAAATLTRNLCYANKDQLSAGVICAGWDAREGGAVFAIPQGGSFLEQPFAVSGSGSMYALGYCDDHLRPDLGREDCVRHVQAALEMAVSRDGASGGIIRLCVVTARGVERWTVVPGE 734
            T+++A  F  G+++GADSRT+ GS++ANR+TDK+T V+  I+  RSGS+ADTQ VA++++  L  Y  +   PP+V  AATL + +CY NKDQLSAG+I AGWD ++GG V+ IP GGS  +QPFA+ GSGS Y  GYCD   +  + RE+CV  V+ +L +A++RDG+SGG+IR+ V+T +GVER   VPG+
Sbjct:   12 TSIMAVAFKDGVIVGADSRTTTGSYIANRVTDKLTKVHDLIYCCRSGSAADTQAVADIVQYYLQMYSVQQDEPPSVHTAATLFQEMCYQNKDQLSAGIIVAGWDKKKGGTVYNIPLGGSLHQQPFAIGGSGSTYIYGYCDSQYKDGMSREECVDFVKNSLALAMARDGSSGGVIRMAVITEKGVER-LFVPGD 203
[Close]
BLAST of mRNA_H-paniculata_contig10799.509.1 vs. uniprot
Match: A0A1Y1Y0Z6_9FUNG (Proteasome subunit beta n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y0Z6_9FUNG)

HSP 1 Score: 211 bits (537), Expect = 3.940e-61
Identity = 99/193 (51.30%), Postives = 139/193 (72.02%), Query Frame = 3 
Query:  156 TTLVAARFDKGIVIGADSRTSQGSFVANRLTDKITSVYPGIFLARSGSSADTQFVAEVIESKLDAYRTEFGRPPTVRAAATLTRNLCYANKDQLSAGVICAGWDAREGGAVFAIPQGGSFLEQPFAVSGSGSMYALGYCDDHLRPDLGREDCVRHVQAALEMAVSRDGASGGIIRLCVVTARGVERWTVVPGE 734
            TT++A  FDKG++IGADSRT+ GS++ANR+TDK+T V+  I+  RSGS+ADTQ VA+++   L  Y  + G  PT RAAA+L + LCY NKD L AG+I  GWD ++GG V+ IP GGS   +PFA+ GSGS Y  GYCD   +  + +++C+  V+ A+ +A+SRDG+SGG+IR+ ++T  GVER   VPG+
Sbjct:   13 TTIMAVEFDKGVIIGADSRTTTGSYIANRVTDKLTPVHDRIWCCRSGSAADTQAVADIVHYYLQMYSVQHGEAPTTRAAASLFQELCYTNKDALMAGIIVGGWDKKDGGCVYNIPLGGSLHREPFAIGGSGSTYIYGYCDSVYKRGMTKDECLEFVRNAVSLAMSRDGSSGGVIRMAIITEEGVER-IFVPGD 204
[Close]
BLAST of mRNA_H-paniculata_contig10799.509.1 vs. uniprot
Match: A0A1Y1YC46_9FUNG (Proteasome subunit beta n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YC46_9FUNG)

HSP 1 Score: 209 bits (533), Expect = 1.520e-60
Identity = 98/193 (50.78%), Postives = 139/193 (72.02%), Query Frame = 3 
Query:  156 TTLVAARFDKGIVIGADSRTSQGSFVANRLTDKITSVYPGIFLARSGSSADTQFVAEVIESKLDAYRTEFGRPPTVRAAATLTRNLCYANKDQLSAGVICAGWDAREGGAVFAIPQGGSFLEQPFAVSGSGSMYALGYCDDHLRPDLGREDCVRHVQAALEMAVSRDGASGGIIRLCVVTARGVERWTVVPGE 734
            TT++A  FDKG++IGADSRT+ G+++ANR+TDK+TSV+  I+  RSGS+ADTQ VA+++   L  Y  + G  P+ + AA+L + LCY+NKD L AG+I AGWD   GG+V+ IP GGS   +PFA+ GSGS Y  GYCD   R  + + DC+  V+ A+ +A++RDG+SGG+IR+ ++T  GVER   VPG+
Sbjct:   13 TTIMAVEFDKGVIIGADSRTTTGAYIANRVTDKLTSVHDRIWCCRSGSAADTQAVADIVHYYLQMYTAQHGEAPSTKVAASLFQELCYSNKDALMAGIIVAGWDKHTGGSVYNIPLGGSLHREPFAIGGSGSAYIYGYCDSTFRKGMSQADCLEFVRNAVSLAMARDGSSGGVIRMAIITEAGVER-IFVPGD 204
[Close]
BLAST of mRNA_H-paniculata_contig10799.509.1 vs. uniprot
Match: V3ZJH0_LOTGI (Proteasome subunit beta n=1 Tax=Lottia gigantea TaxID=225164 RepID=V3ZJH0_LOTGI)

HSP 1 Score: 209 bits (532), Expect = 1.810e-60
Identity = 99/189 (52.38%), Postives = 134/189 (70.90%), Query Frame = 3 
Query:  156 TTLVAARFDKGIVIGADSRTSQGSFVANRLTDKITSVYPGIFLARSGSSADTQFVAEVIESKLDAYRTEFGRPPTVRAAATLTRNLCYANKDQLSAGVICAGWDAREGGAVFAIPQGGSFLEQPFAVSGSGSMYALGYCDDHLRPDLGREDCVRHVQAALEMAVSRDGASGGIIRLCVVTARGVERWTV 722
            TT+ A  FD G+VIGADSRT+ G+++ANR+TDK+T V   I+  RSGS+ADTQ VA++++ +L+ Y  E G  P V  AA   R LCY ++D +SAG+I AGWD +EGG VFA+P GG  + QPFA+ GSGS Y  GY D   +P + +E+C+  V  AL +A++RDG+SGGIIRL  +T  GVER T+
Sbjct:    7 TTIAAVEFDGGVVIGADSRTTSGAYIANRVTDKLTKVTDKIYCCRSGSAADTQAVADIVKYQLNFYEMEMGEEPLVHTAAHTFRELCYDHRDNISAGIIVAGWDKKEGGQVFAVPLGGMVVRQPFAIGGSGSTYLYGYVDSQFKPKMSKEECLPFVANALSLAINRDGSSGGIIRLAAITKDGVERITL 195
[Close]
BLAST of mRNA_H-paniculata_contig10799.509.1 vs. uniprot
Match: A0A8H8LV04_9AGAM (Proteasome subunit beta n=2 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8LV04_9AGAM)

HSP 1 Score: 210 bits (534), Expect = 2.400e-60
Identity = 100/186 (53.76%), Postives = 133/186 (71.51%), Query Frame = 3 
Query:  156 TTLVAARFDKGIVIGADSRTSQGSFVANRLTDKITSVYPGIFLARSGSSADTQFVAEVIESKLDAYRTEFGRPPTVRAAATLTRNLCYANKDQLSAGVICAGWDAREGGAVFAIPQGGSFLEQPFAVSGSGSMYALGYCDDHLRPDLGREDCVRHVQAALEMAVSRDGASGGIIRLCVVTARGVER 713
            T+++A +F  G+VIGADSRT+ GS++ANR+TDK+T V+  ++  RSGS+ADTQ VA+++   L  Y  ++G PPTV AAATL + LCY NKD LSAG+I AGWD   G +V+ IP GG    QP+A+ GSGS Y  GYCD   R   GR++ V  V+  L +A+SRDG+SGG IR+CV+T  GVER
Sbjct:   18 TSIMAVQFKDGVVIGADSRTTMGSYIANRVTDKLTFVHDRVYCCRSGSAADTQAVADIVHYYLQMYEQQYGDPPTVHAAATLFQRLCYENKDNLSAGIIVAGWDKEAGPSVYNIPVGGGLFRQPWAIGGSGSTYVYGYCDATYREGWGRDETVNFVKNTLALAMSRDGSSGGTIRMCVITEEGVER 203
[Close]
BLAST of mRNA_H-paniculata_contig10799.509.1 vs. uniprot
Match: A0A1C7N0K9_9FUNG (Proteasome subunit beta n=1 Tax=Choanephora cucurbitarum TaxID=101091 RepID=A0A1C7N0K9_9FUNG)

HSP 1 Score: 208 bits (529), Expect = 5.660e-60
Identity = 100/192 (52.08%), Postives = 137/192 (71.35%), Query Frame = 3 
Query:  156 TTLVAARFDKGIVIGADSRTSQGSFVANRLTDKITSVYPGIFLARSGSSADTQFVAEVIESKLDAYRTEFGRPPTVRAAATLTRNLCYANKDQLSAGVICAGWDAREGGAVFAIPQGGSFLEQPFAVSGSGSMYALGYCDDHLRPDLGREDCVRHVQAALEMAVSRDGASGGIIRLCVVTARGVERWTVVPG 731
            T+++A  F  G+++GADSRT+ G+++ANR+TDK+T V+  I+  RSGS+ADTQ VA+++   L  Y       P+VR AA L + LCY NKD LSAGVI AGWD +EG  V+ IP GGS  +QPFA+ GSGS Y  GYCD + + D+ RE+C+  V+ +L +A+SRDG+SGG+IRL V+T  GVER   +PG
Sbjct:   12 TSIMAVAFKDGVILGADSRTTTGAYIANRVTDKLTKVHDTIYCCRSGSAADTQAVADIVHYYLQMYTASENEAPSVRTAAALFQELCYQNKDNLSAGVIVAGWDKKEGPCVYNIPLGGSLHKQPFAIGGSGSTYIYGYCDAYYKDDMSREECLEFVKNSLALAMSRDGSSGGVIRLAVITREGVER-LFIPG 202
[Close]
BLAST of mRNA_H-paniculata_contig10799.509.1 vs. uniprot
Match: A0A067QEW7_9AGAM (Proteasome subunit beta n=2 Tax=Agaricomycetes TaxID=155619 RepID=A0A067QEW7_9AGAM)

HSP 1 Score: 207 bits (528), Expect = 2.180e-59
Identity = 101/193 (52.33%), Postives = 136/193 (70.47%), Query Frame = 3 
Query:  156 TTLVAARFDKGIVIGADSRTSQGSFVANRLTDKITSVYPGIFLARSGSSADTQFVAEVIESKLDAYRTEFGRPPTVRAAATLTRNLCYANKDQLSAGVICAGWDAREGGAVFAIPQGGSFLEQPFAVSGSGSMYALGYCDDHLRPDLGREDCVRHVQAALEMAVSRDGASGGIIRLCVVTARGVERWTVVPGE 734
            T+++A +FD G+V+GADSRT+ GS++ANR+TDK+T V+  I+  RSGS+ADTQ VA+++   L  Y    G PP+V  AATL + +CY NKD LSAG+I AGWD   G +V+ IP GG    QP+A+ GSGS Y  GYCD   +   GR+D V  V+  L +A+SRDG+SGG+IR+CV+T  GVER   VPG+
Sbjct:   21 TSIMAVQFDGGVVVGADSRTTTGSYIANRVTDKLTYVHDRIYCCRSGSAADTQAVADLVHYYLQMYSQSSGEPPSVHTAATLFQKMCYENKDNLSAGIIVAGWDPTSGPSVYNIPLGGGIFRQPWAIGGSGSTYVYGYCDATYKEGWGRDDTVNFVRNTLALAMSRDGSSGGVIRMCVITEDGVER-LFVPGD 212
[Close]
BLAST of mRNA_H-paniculata_contig10799.509.1 vs. uniprot
Match: A0A1D1ZF38_9ARAE (Proteasome subunit beta (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1ZF38_9ARAE)

HSP 1 Score: 207 bits (526), Expect = 2.280e-59
Identity = 93/186 (50.00%), Postives = 141/186 (75.81%), Query Frame = 3 
Query:  156 TTLVAARFDKGIVIGADSRTSQGSFVANRLTDKITSVYPGIFLARSGSSADTQFVAEVIESKLDAYRTEFGRPPTVRAAATLTRNLCYANKDQLSAGVICAGWDAREGGAVFAIPQGGSFLEQPFAVSGSGSMYALGYCDDHLRPDLGREDCVRHVQAALEMAVSRDGASGGIIRLCVVTARGVER 713
            TT++A +F +G++IGADSRTS GS+VANR+TDK+TSV+  I+  RSGS+ADTQ +A+++   L+ +  + G  P+V++A+ L + LCY NKD L+AG+I AGWD  EGG+V+ IP GGS  +QPFA+ GSGS +  GYCD + + ++ +E+ +  ++ A+ +A++RDG+SGG IRL ++T +GVER
Sbjct:   20 TTIMAVQFGEGVIIGADSRTSTGSYVANRVTDKLTSVHDRIYCCRSGSAADTQAIADIVRYYLEMFSIKDGEDPSVQSASALFQELCYQNKDNLTAGIIVAGWDKYEGGSVYTIPLGGSLHKQPFAIGGSGSTFIYGYCDSNYKENMTKEEAINFIRTAIALAIARDGSSGGCIRLAIITKQGVER 205
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10799.509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEH7_ECTSI4.230e-10778.20Proteasome endopeptidase complex n=2 Tax=Ectocarpu... [more]
A0A1Y1WB45_9FUNG4.890e-6350.78Proteasome subunit beta n=1 Tax=Linderina pennispo... [more]
A0A8H7UIW0_MORIS5.040e-6251.81Proteasome subunit beta n=1 Tax=Mortierella isabel... [more]
A0A1Y1Y0Z6_9FUNG3.940e-6151.30Proteasome subunit beta n=1 Tax=Basidiobolus meris... [more]
A0A1Y1YC46_9FUNG1.520e-6050.78Proteasome subunit beta n=1 Tax=Basidiobolus meris... [more]
V3ZJH0_LOTGI1.810e-6052.38Proteasome subunit beta n=1 Tax=Lottia gigantea Ta... [more]
A0A8H8LV04_9AGAM2.400e-6053.76Proteasome subunit beta n=2 Tax=Ceratobasidium sp.... [more]
A0A1C7N0K9_9FUNG5.660e-6052.08Proteasome subunit beta n=1 Tax=Choanephora cucurb... [more]
A0A067QEW7_9AGAM2.180e-5952.33Proteasome subunit beta n=2 Tax=Agaricomycetes Tax... [more]
A0A1D1ZF38_9ARAE2.280e-5950.00Proteasome subunit beta (Fragment) n=1 Tax=Anthuri... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10799contigH-paniculata_contig10799:1852..7500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score333.2
Seed ortholog evalue1e-88
Seed eggNOG ortholog2880.D8LEH7
Preferred namePSMB6
KEGG koko:K02738,ko:K02741,ko:K11507
KEGG Pathwayko03050,map03050
KEGG ModuleM00337,M00340
Hectar predicted targeting categorysignal peptide
GOsGO:0000502,GO:0001889,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003674,GO:0003824,GO:0004175,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0005839,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007088,GO:0007275,GO:0007346,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009615,GO:0009617,GO:0009628,GO:0009896,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010499,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0014070,GO:0014889,GO:0016020,GO:0016579,GO:0016787,GO:0019222,GO:0019538,GO:0019774,GO:0019882,GO:0019941,GO:0030071,GO:0030162,GO:0030163,GO:0031331,GO:0031597,GO:0031974,GO:0031981,GO:0031984,GO:0032270,GO:0032436,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034097,GO:0034515,GO:0036211,GO:0042175,GO:0042221,GO:0042493,GO:0043161,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043279,GO:0043412,GO:0043500,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048536,GO:0048538,GO:0048731,GO:0048732,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051246,GO:0051247,GO:0051336,GO:0051602,GO:0051603,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0052547,GO:0052548,GO:0060255,GO:0061008,GO:0062033,GO:0065007,GO:0065009,GO:0070011,GO:0070013,GO:0070555,GO:0070628,GO:0070646,GO:0070647,GO:0070887,GO:0071214,GO:0071257,GO:0071310,GO:0071345,GO:0071347,GO:0071704,GO:0080090,GO:0090068,GO:0098586,GO:0098827,GO:0104004,GO:0140096,GO:1901423,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:1990111,GO:2000116,GO:2001252
EggNOG free text desc.Proteasome subunit beta
EggNOG OGsKOG0174@1,KOG0174@2759
Ec32 ortholog descriptionNucleophile aminohydrolases, N-terminal
Ec32 orthologEc-21_004640.1
EC3.4.25.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03036,ko03051
Exons4
Model size1826
Cds size741
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10799.509.1prot_H-paniculata_contig10799.509.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10799 1890..6453 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928783.6679642-UTR-H-paniculata_contig10799:1851..18891622928783.6679642-UTR-H-paniculata_contig10799:1851..1889Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10799 1852..1889 +
1691480618.2488742-UTR-H-paniculata_contig10799:1851..18891691480618.2488742-UTR-H-paniculata_contig10799:1851..1889Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10799 1852..1889 +
1622928783.7617977-UTR-H-paniculata_contig10799:6453..75001622928783.7617977-UTR-H-paniculata_contig10799:6453..7500Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10799 6454..7500 +
1691480618.305072-UTR-H-paniculata_contig10799:6453..75001691480618.305072-UTR-H-paniculata_contig10799:6453..7500Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10799 6454..7500 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928783.6902282-CDS-H-paniculata_contig10799:1889..21571622928783.6902282-CDS-H-paniculata_contig10799:1889..2157Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10799 1890..2157 +
1691480618.2693799-CDS-H-paniculata_contig10799:1889..21571691480618.2693799-CDS-H-paniculata_contig10799:1889..2157Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10799 1890..2157 +
1622928783.7070112-CDS-H-paniculata_contig10799:4166..43631622928783.7070112-CDS-H-paniculata_contig10799:4166..4363Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10799 4167..4363 +
1691480618.2771204-CDS-H-paniculata_contig10799:4166..43631691480618.2771204-CDS-H-paniculata_contig10799:4166..4363Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10799 4167..4363 +
1622928783.7235332-CDS-H-paniculata_contig10799:4829..49271622928783.7235332-CDS-H-paniculata_contig10799:4829..4927Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10799 4830..4927 +
1691480618.2873635-CDS-H-paniculata_contig10799:4829..49271691480618.2873635-CDS-H-paniculata_contig10799:4829..4927Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10799 4830..4927 +
1622928783.7381651-CDS-H-paniculata_contig10799:6275..64531622928783.7381651-CDS-H-paniculata_contig10799:6275..6453Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10799 6276..6453 +
1691480618.296781-CDS-H-paniculata_contig10799:6275..64531691480618.296781-CDS-H-paniculata_contig10799:6275..6453Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10799 6276..6453 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10799.509.1

>prot_H-paniculata_contig10799.509.1 ID=prot_H-paniculata_contig10799.509.1|Name=mRNA_H-paniculata_contig10799.509.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=247bp
MLKLAVDESSARCLRLFSFYSFSALLALLVIQSPSGCRATTLVAARFDKG
IVIGADSRTSQGSFVANRLTDKITSVYPGIFLARSGSSADTQFVAEVIES
KLDAYRTEFGRPPTVRAAATLTRNLCYANKDQLSAGVICAGWDAREGGAV
FAIPQGGSFLEQPFAVSGSGSMYALGYCDDHLRPDLGREDCVRHVQAALE
MAVSRDGASGGIIRLCVVTARGVERWTVVPGEGERRRDAEGVGGGG*
back to top

mRNA from alignment at H-paniculata_contig10799:1852..7500+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10799.509.1 ID=mRNA_H-paniculata_contig10799.509.1|Name=mRNA_H-paniculata_contig10799.509.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5649bp|location=Sequence derived from alignment at H-paniculata_contig10799:1852..7500+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAGGCTGCCCTGCTTGCTGTGCACATCCAGGTACAACATGCTAAAACTC
GCCGTCGACGAATCAAGCGCAAGGTGCTTGCGCCTGTTTTCATTTTATTC
ATTTTCTGCGTTGTTGGCGCTGTTGGTGATACAATCGCCCAGCGGTTGTC
GAGCGACGACGCTCGTTGCCGCACGCTTCGATAAGGGGATAGTGATCGGC
GCCGACTCGAGGACCAGTCAGGGCAGCTTTGTGGCAAACCGACTGACGGA
CAAGATCACCTCGGTGTATCCAGGGATATTTCTAGCTCGATCAGGCAGCT
CAGCAGGTAAGACGTCGGATATATTTTCTATTGAAGAGACGTGTGAACGA
CATATAGACAGTGATTGTTCACTCTCATCTTGCTCTCATGTACATAGTTG
TACAAATAGAGATGGTGAAGTAAAACAACACAGGTTGCTTACAAATACGG
ACGACTGCCCATTTTGAAGTCAACCTAAGAGATGTCGGTTACCTTCGGTT
GATCAAAGCCAAAAGCTCTTTAGACCCCCTGCAGGGTCTCTTTTTCAGTT
GTAGCTGCTGCTTGGCCGGCGTGCAGATCCACTCGCTTCAATGCGCTTTC
GGGTCGAGGGGGTCGACATCCTCATCTGCCTGTAGGTCCTTGTCGCACTC
GGGAAAATCAGACTCCTCGACGGCGGAGGCTGCGTCCTCGGCGGTGGCTC
CTGCCCCCTGGGAGTTTCTGGTCGTCGCTCCGATTGGTGTCACTGCCGCT
TGACGTTCTTGCTATCGATTTGCCGCCCCGTTTTCTGCTGCGGACCTTCT
TCACGAGAACATGATTTTTTTAGGGAGGTTTTCAGTTCTTGGTGTATTTT
GGGTCGACAGCGTCCAACGGCGTTGGCAACGGCGGCTCGCGCAGCCTGTT
GTTGTTGGGATAGTCGGACCTTCTGCGCCTGATTGGTCAATCGTTTTTTT
CTGTGTTGAGCGGCCGTTGCACTGCTGATCACTGTTTTCCCTTTGTTGTA
TCTAAGCCATCGTTCTCCCAAACTCGATAAACGAACATAATAGATGTGAG
AGAAACCGGTCAGATGTGTGTTTCGTGTTTCGTGCTTCTGGTGTCGCCAA
TGCTGACATATTATGCAATGTTTCTTTCTACGATTTACCTTGTATTGCGT
CTTCCAAAGTTTCCCGAACCACGTATAAGTGGCGGCGTTTATTTCGTTGG
TGTAGGCAAGGAGAGATCGAATCACATCCGTAGTAGACTTGGTACGCCCG
ACTGTGGCAAGAGCGCCTTCAAGCACTCTTCAGGTTGCTCTTGGTGGCTG
ATCAAACCCACTGAAATATAGTCATATCTTGATATTGTGGGTGTTTGGCG
TAAAATCTACGGCATCTACGAAACATGGTCTCCACAGTACACCTCGTTTT
CAAGGGAATTGTGTGTACTCGGGTAACGGCAAAGAAAGCACAGTGTAGCT
AGCTAGCTGGATGTTTCTTCCTCGAGGTTTCACGATAACGCTCTGCTGTC
TGCACTGTTCGGTAGTTTGTTTGCGAATATACGACAAATTACCCCTCTAC
AACCACATCAAAACAAGGTTCTGTGCTCTCCGCACCCCGCTTTGCAAAAA
CGTTTTAGGCATCAGTTGTTAGTTTACCTGATGTTGGACTTGGCTCTACT
CGACGTTACTACGTCCTTGTTTGCTGTACGGACTCGGAAACATACTGGTA
CCGATTGGTTCTCCTACTACTCTCTTCCAACGTCGAGTAATCAAGCCATT
GACTAAGGACAGGTAATGGAGAATGAGAACAGATGGGGAGAAACACGACG
ACCGGATTTATCTTCTGTCAAACTGGTTTTTATTACTGTTGCGCGTAGTT
TCCACTCGCGATTCTCATGTCTCAATCAGATGATAACGCAAAGGTGTACT
AGAGGTACGCCTCTTCCTCCCGTAAACGAGGGAACAGGCGAAAGCTGTGT
CTCTCTTCAGTATTTGAAGGTTTCACCTGTTAAACATGCCAGGTGAGTAC
TGAACAGTCGGGAGACATGGGCGTCGACCATGGAGCTCAGGAGAACGCCA
ACAACGCTGACAGGGTTGCATAATGACTCGAGGGAGAGAGAGACAAGGAA
TATCCCGTACGGACTAAAGAAAGGCGCGTCAGATAGAGATCAGGCTGGCA
ATCACATTACGACTATTTCTTTTTAGAAAAGCGTGTGTATCACCTGACCC
TCCCGTACATATCCGTCATCATGACTAATCAATCTACTCCATCCTTCCGA
AATCACTCCTTGGTACTACCTGTCCGCTGTATGTCTGTCTCCGGTTCGCC
ACGATGGTAATGCAGACACCCAGTTTGTGGCCGAAGTGATAGAGTCAAAG
CTGGACGCTTATCGGACGGAGTTCGGGCGTCCGCCCACGGTCCGCGCGGC
GGCGACATTGACGAGGAACCTGTGCTACGCCAACAAGGATCAGCTGAGCG
CAGGAGTGATCTGCGCCGGCTGGGACGCACGGGAGGGCGGGGCGGTTTTT
GCCATCCCTCAGGTACTGCGCCTGGACTCTGTTTGTACTGTTTTATACTG
TTCCTGTACTCTCCTCTTTTGTACTATGCATAACTCATATGATGCCACGG
CGGGTGGTCCCCTCCTAAGTAGAATACCCGCATCGATTGTGTGTTGTTTC
GCTCCAGCAGAAACGGCAACCATCACAAGAACCAGAGCCACAACAACACA
CAACCGCGACACGTTATTATTCAGTGATAGCCTTCCTCAAAGATCCTATG
CGAAACTGCACCTCCTGCCCACCCCCGCATACGTCGCACCGTAATACATT
TCCATACCCTGCCCCCTCACTATTCCGAGGTGATATACATGGACTATTTA
GTTGGCTGCATGCAATGCACAAACCTCAGAAACCTTGCGCGCCTTTGCTC
CCCTTCTTGCGCTTTGTCGTGGTCGCTGTTGTGGCGTTTCTCTTCTGGGA
AATGGATGATGTGGGTTTCGTTGAACAGGGGGGCTCTTTCCTGGAGCAAC
CATTCGCTGTCAGCGGGTCCGGATCGATGTACGCGTTGGGATACTGCGAC
GATCATCTGCGACCAGATCTCGGAAGGTGTACAACTGTTGAACTGAAAAT
ATCGCCTTTACTATTGTAGTGATATCATGGACGGAGGGGGGAATCTTGCG
ACCAAGTACGACACTGCGAAGAGTTAGCTCTTGGAAGGTTACACGAATCG
TCCCAGATAGTGTTTTATTGAGAAATATTTGTACGAATCTAAACGGTGCC
CTCCCCGTCTTGAGTGGCGTTAAGTCCCGCTACTACACTGCGCTGCTGAG
CCGATTCGGTCATAGCCGACGTAGCTTGCTGCCTACTTTTTGTTCAGAAT
ACGCTCCAACGCATGCATCATCTTCATCGAGTAACGGTGTTCCTGCTTTT
TGACTAACCTGGTACTTCGAGTATGCATACCGCTGAAGTCCTCATGACAC
AGGTTGGCTAATCAGACAGTGATGGCCACGGCCCCACTCACAGGTAAACG
GTGCTGACGGCTAGCTACTGTTGGAGACCTTTTCGACTCACGTTCGTAAC
AGTCATTTTCACTACAAGTACTACTTGTAGTAACAGGGCGAATCGAGCGT
GACTCTGACTTGAAATCTTGCCTCTCGCTTTTAGTGTTACGTTCACAGAT
AACTGAAAATGCTATCTACATATCACACCTAAAAGGGCCGAGCAACTTCG
ATTTGTGCGGGTCAAGGATGGACATGCTTCGTCGTCCTTTCCTTGCCCAA
TACATGCCATGTCGCCTTAGTGTGCTGAAAGAGCGCTGTGACAACCTTAT
CACGAGCCGCTATACATGCCGAGAACTAGTATATTGGAGAGAACCGAAGT
TATAATTCACTCAGTTAACTGAACACTTTCAGTGTGATTGATTGAGTCAC
ATTTAGGCCGTGTCCATCAATCAGTGTCTGCGTGAGATTGTGTGTCTATG
CATCTATAGGGCTAGGTGCTCCGGCAGCAGCGATGATTCCCTAAAGCGAA
TCGCGATTGTTAGTGAAAGGTGCCAAACTCTGCACGAGTCAGACGTTACC
AGGAGGGGCACTATCGATTTACCTCCCTCGATCGCAGTCAGACCAAGAAC
GATTGCGTTGCTAAAACGATGGGAAACTAAGAGCAATGACGGAGTGACCT
ATCCGAATAGAGCGACGGGAATTTGACTGCTTGAGGGACTGGTCCATGCC
TACCCCGCCCTCTAAATAACGTTGCTTGGCATTGCTGGCGACGTGGCGTG
TTTTTCGACAAGTTTGCAATATACTCGTAGTTTTTCACGAGTGATCATTC
CGAAATATGTAACATTTCGGCTCGTGATGAGGCCTAGTTCTCTCCAGGTT
ACTTTACAAGCATACCCCTCCCCCCCCCCCCCCGACACCATCACCACCTT
GATCACCTTGACCACCACCAACAGGGAAGATTGCGTGCGCCATGTACAAG
CAGCGCTGGAAATGGCGGTCAGCCGCGATGGTGCATCCGGGGGCATCATT
CGATTGTGCGTGGTCACCGCGCGGGGGGTAGAGCGATGGACCGTCGTGCC
GGGAGAAGGAGAGAGAAGGCGTGACGCTGAGGGGGTGGGCGGCGGCGGAT
GAGCACCGGCGGACTGCGCAACGTGTATAGCCGATGTAGATCGTAACGAG
TATAACCGATGTAGATCACTAACTAATGCGTGTGTCCGTTTTAGACAAAA
ACACATTTTCCTGCTAAAGGAGGAAACTCAATGGAGCCAGTCATATTCCA
CACTTACTGCAAGTGTTTTTGTCCAAGTTGGATTTCCTCCATTATTACCG
TGAAATTCTTGATGCCTGTCTTGACAACATCCAGAATTTGGCCGAACGGT
GTTCAGCTGTTGTTTCTTTGGATGAGAAGTAGAAACGGCGGGCTCGGGCT
ATTTTAACCCCTATTGCACCGGATCCTTTACAATCCCTAGGCAAACCCTC
CCTAAAAATGGTGCTCTTCACGAAATTTTGAGCAAACACACAACGCCTTC
GCTAAGGTGAAGGAGTCGGGGCTGCGAGATAGGCGTTTTTTATCTTACTC
TTCATGTTTGTTCCCTCCCCCTCCTCTTTGCGGCTGTTTTGCCGCGGGAC
TGTCAGATTACTTTTGTTCTTATGCAGGGTCCGGTGCCGTAGGGGTTGAG
AGAGATAGAGAAAAAACAATATGCACTTTTTTTCTGGAGAGGGGTTGATG
GTTGATTGGGCGGCATCGTGTAGTGTGTGTGTGTGTGTGCGTGGCTATGC
GTTGTGTTGTTTACAGCTTCTCTGTTGTGAGCTTCGTCCGAGAATGAAGA
AGGGGGATAGCCTGCTCTCTGCAGCTATCTATTTAGCAGTTTCGCATCGT
TCGCCATGTGTTACATACATGATCGTTGAAGACGGCGCATGCTTTGTTGT
GGAGGATAGACACCACCTCGGAGACGTGTGTGCAAGTGCAACTGACTGTG
TGGTTGGTTTTTGTTTTTTTCTGTAGTTTGTATTTCAGGAATTCCTGCGG
TAATGATATACTGGACTGTGTTATGTGAAGGTGTGTGTGTGTTTTAACCC
CCGGAAGGCTGAGGCTAAAACGTTTACCGATGCTTCCATACTTGAGTATT
TTACCGAAGTATTTCTACATTTCCTTGCACAGAACAGAGTTATTTATTC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig10799:1852..7500+

>mRNA_H-paniculata_contig10799.509.1 ID=mRNA_H-paniculata_contig10799.509.1|Name=mRNA_H-paniculata_contig10799.509.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1482bp|location=Sequence derived from alignment at H-paniculata_contig10799:1852..7500+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTAAAACTCGCCGTCGACGAATCAAGCGCAAGGTGCTTGCGCCTGTT
TTCATTTTATTCATTTTCTGCGTTGTTGGCGCTGTTGGTGATACAATCGC
CCAGCGGTTGTCGAGCGACGACGCTCGTTGCCGCACGCTTCGATAAGGGG
ATAGTGATCGGCGCCGACTCGAGGACCAGTCAGGGCAGCTTTGTGGCAAA
CCGACTGACGGACAAGATCACCTCGGTGTATCCAGGGATATTTCTAGCTC
GATCAGGCAGCTCAGCAGATGCTAAAACTCGCCGTCGACGAATCAAGCGC
AAGGTGCTTGCGCCTGTTTTCATTTTATTCATTTTCTGCGTTGTTGGCGC
TGTTGGTGATACAATCGCCCAGCGGTTGTCGAGCGACGACGCTCGTTGCC
GCACGCTTCGATAAGGGGATAGTGATCGGCGCCGACTCGAGGACCAGTCA
GGGCAGCTTTGTGGCAAACCGACTGACGGACAAGATCACCTCGGTGTATC
CAGGGATATTTCTAGCTCGATCAGGCAGCTCAGCAGACACCCAGTTTGTG
GCCGAAGTGATAGAGTCAAAGCTGGACGCTTATCGGACGGAGTTCGGGCG
TCCGCCCACGGTCCGCGCGGCGGCGACATTGACGAGGAACCTGTGCTACG
CCAACAAGGATCAGCTGAGCGCAGGAGTGATCTGCGCCGGCTGGGACGCA
CGGGAGGGCGGGGCGGTTTTTGCCATCCCTCAGACACCCAGTTTGTGGCC
GAAGTGATAGAGTCAAAGCTGGACGCTTATCGGACGGAGTTCGGGCGTCC
GCCCACGGTCCGCGCGGCGGCGACATTGACGAGGAACCTGTGCTACGCCA
ACAAGGATCAGCTGAGCGCAGGAGTGATCTGCGCCGGCTGGGACGCACGG
GAGGGCGGGGCGGTTTTTGCCATCCCTCAGGGGGGCTCTTTCCTGGAGCA
ACCATTCGCTGTCAGCGGGTCCGGATCGATGTACGCGTTGGGATACTGCG
ACGATCATCTGCGACCAGATCTCGGAAGGGGGGCTCTTTCCTGGAGCAAC
CATTCGCTGTCAGCGGGTCCGGATCGATGTACGCGTTGGGATACTGCGAC
GATCATCTGCGACCAGATCTCGGAAGGGAAGATTGCGTGCGCCATGTACA
AGCAGCGCTGGAAATGGCGGTCAGCCGCGATGGTGCATCCGGGGGCATCA
TTCGATTGTGCGTGGTCACCGCGCGGGGGGTAGAGCGATGGACCGTCGTG
CCGGGAGAAGGAGAGAGAAGGCGTGACGCTGAGGGGGTGGGCGGCGGCGG
ATGAGGAAGATTGCGTGCGCCATGTACAAGCAGCGCTGGAAATGGCGGTC
AGCCGCGATGGTGCATCCGGGGGCATCATTCGATTGTGCGTGGTCACCGC
GCGGGGGGTAGAGCGATGGACCGTCGTGCCGGGAGAAGGAGAGAGAAGGC
GTGACGCTGAGGGGGTGGGCGGCGGCGGATGA
back to top