mRNA_H-paniculata_contig1989.5079.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1989.5079.1
Unique NamemRNA_H-paniculata_contig1989.5079.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1989.5079.1 vs. uniprot
Match: D8LBX0_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBX0_ECTSI)

HSP 1 Score: 195 bits (495), Expect = 1.810e-59
Identity = 90/112 (80.36%), Postives = 96/112 (85.71%), Query Frame = 1
Query:    1 KLADFGLAKLLNYDAMLTTACGTPGYVAPEILERRPYGKEVDMWSVGVIAYILLCGFPPFYDESNDVMFQAIKSGSYEFPSPFWDDVDKGAKDTIGCLLVLDPRKRYTAEQV 336
            KLADFGLAKL   + ML TACGTPGYVAPEILE RPYGKEVDMWSVGVIAYILLCGFPPFYDE+N  MF+AIK G Y+FPSPFWDDVD  AKD IGCLLV D  KRY+AEQ+
Sbjct:  160 KLADFGLAKLCTENTMLNTACGTPGYVAPEILEGRPYGKEVDMWSVGVIAYILLCGFPPFYDENNSAMFKAIKLGKYDFPSPFWDDVDCEAKDMIGCLLVTDAAKRYSAEQL 271          
BLAST of mRNA_H-paniculata_contig1989.5079.1 vs. uniprot
Match: A0A835ZAV1_9STRA (Phosphorylase kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAV1_9STRA)

HSP 1 Score: 191 bits (484), Expect = 3.660e-58
Identity = 87/112 (77.68%), Postives = 97/112 (86.61%), Query Frame = 1
Query:    1 KLADFGLAKLLNYDAMLTTACGTPGYVAPEILERRPYGKEVDMWSVGVIAYILLCGFPPFYDESNDVMFQAIKSGSYEFPSPFWDDVDKGAKDTIGCLLVLDPRKRYTAEQV 336
            KLADFGLA+LLN +A++T ACGTPGYVAPEILE RPYGKEVDMW +GVI+YILLCGFPPFYDESN  +F+AIKSG Y++PSPFWDDV  GAKD I  LLVL P KRYTAE V
Sbjct:  158 KLADFGLAQLLNDNALMTAACGTPGYVAPEILEGRPYGKEVDMWGLGVISYILLCGFPPFYDESNKELFRAIKSGQYDYPSPFWDDVSHGAKDLIDHLLVLKPEKRYTAENV 269          
BLAST of mRNA_H-paniculata_contig1989.5079.1 vs. uniprot
Match: A0A7S2UWQ7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWQ7_9STRA)

HSP 1 Score: 181 bits (459), Expect = 2.030e-54
Identity = 82/112 (73.21%), Postives = 96/112 (85.71%), Query Frame = 1
Query:    1 KLADFGLAKLLNYDAMLTTACGTPGYVAPEILERRPYGKEVDMWSVGVIAYILLCGFPPFYDESNDVMFQAIKSGSYEFPSPFWDDVDKGAKDTIGCLLVLDPRKRYTAEQV 336
            KLADFGLAKLL+ D+M+ TACGTPGYVAPEILE R YG EVDMWS+GVIAYILLCGFPPFYD++N  +F+ IKSG Y++PSPFWD+V   AKD I  LLVLDP+KR+TA+ V
Sbjct:  157 KLADFGLAKLLDEDSMMHTACGTPGYVAPEILEGRAYGIEVDMWSIGVIAYILLCGFPPFYDDNNAALFRQIKSGRYDYPSPFWDEVSDQAKDLIDHLLVLDPKKRFTAQDV 268          
BLAST of mRNA_H-paniculata_contig1989.5079.1 vs. uniprot
Match: A0A3F2RV86_9STRA (Protein kinase domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RV86_9STRA)

HSP 1 Score: 180 bits (457), Expect = 1.380e-53
Identity = 79/112 (70.54%), Postives = 97/112 (86.61%), Query Frame = 1
Query:    1 KLADFGLAKLLNYDAMLTTACGTPGYVAPEILERRPYGKEVDMWSVGVIAYILLCGFPPFYDESNDVMFQAIKSGSYEFPSPFWDDVDKGAKDTIGCLLVLDPRKRYTAEQV 336
            K+ADFGLAKL+  D+++ TACGTPGYVAPEILE RPYG EVD+WS+GVIAYILLCGFPPFYDE+N  +FQ+IKSG Y++PSP+WD V   AKD I  LLV+DP+KR++A+QV
Sbjct:  161 KIADFGLAKLIKGDSLMQTACGTPGYVAPEILEGRPYGAEVDLWSLGVIAYILLCGFPPFYDENNAALFQSIKSGVYDYPSPYWDCVSDSAKDLISRLLVVDPKKRFSAQQV 272          
BLAST of mRNA_H-paniculata_contig1989.5079.1 vs. uniprot
Match: H3GVV5_PHYRM (Protein kinase domain-containing protein n=18 Tax=Peronosporaceae TaxID=4777 RepID=H3GVV5_PHYRM)

HSP 1 Score: 180 bits (457), Expect = 1.640e-53
Identity = 79/112 (70.54%), Postives = 97/112 (86.61%), Query Frame = 1
Query:    1 KLADFGLAKLLNYDAMLTTACGTPGYVAPEILERRPYGKEVDMWSVGVIAYILLCGFPPFYDESNDVMFQAIKSGSYEFPSPFWDDVDKGAKDTIGCLLVLDPRKRYTAEQV 336
            K+ADFGLAKL+  D+++ TACGTPGYVAPEILE RPYG EVD+WS+GVIAYILLCGFPPFYDE+N  +FQ+IKSG Y++PSP+WD V   AKD I  LLV+DP+KR++A+QV
Sbjct:  161 KIADFGLAKLIKGDSLMQTACGTPGYVAPEILEGRPYGAEVDLWSLGVIAYILLCGFPPFYDENNAALFQSIKSGVYDYPSPYWDCVSDSAKDLISRLLVVDPKKRFSAQQV 272          
BLAST of mRNA_H-paniculata_contig1989.5079.1 vs. uniprot
Match: A0A6H5K1Z8_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1Z8_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 2.470e-53
Identity = 88/130 (67.69%), Postives = 96/130 (73.85%), Query Frame = 1
Query:    1 KLADFGLAKLLNYDAMLTTACGTPGYVAPEILERRPYGKEVDMWSVGVIAYILLCGFPPFYDESNDV------------------MFQAIKSGSYEFPSPFWDDVDKGAKDTIGCLLVLDPRKRYTAEQV 336
            KLADFGLAKL   + ML TACGTPGYVAPEILE RPYGKEVDMWSVGVIAYILLCGFPPFYDE+N +                  MF+AIK G Y+FPSPFWDDV+  AKD I CLLV D  KRY+AEQ+
Sbjct:  160 KLADFGLAKLCTENTMLNTACGTPGYVAPEILEGRPYGKEVDMWSVGVIAYILLCGFPPFYDENNSITNIFLTGRATTFRFNHQAMFKAIKLGKYDFPSPFWDDVECEAKDMIDCLLVTDAAKRYSAEQL 289          
BLAST of mRNA_H-paniculata_contig1989.5079.1 vs. uniprot
Match: A0A7S1CJU1_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CJU1_9STRA)

HSP 1 Score: 174 bits (441), Expect = 1.510e-52
Identity = 77/112 (68.75%), Postives = 95/112 (84.82%), Query Frame = 1
Query:    1 KLADFGLAKLLNYDAMLTTACGTPGYVAPEILERRPYGKEVDMWSVGVIAYILLCGFPPFYDESNDVMFQAIKSGSYEFPSPFWDDVDKGAKDTIGCLLVLDPRKRYTAEQV 336
            K+ADFGLAKLL+ D+M++TACGTPGYVAPEILE R Y   VD+WS+GVI YILLCGFPPFYDE+N  +F AIK+GS+++PSP+WD V  GAKD I  LLV++P +R+TAEQV
Sbjct:   60 KIADFGLAKLLSEDSMMSTACGTPGYVAPEILEGRAYTSAVDIWSLGVITYILLCGFPPFYDENNAALFAAIKAGSFDYPSPYWDSVSPGAKDLIDHLLVVNPERRFTAEQV 171          
BLAST of mRNA_H-paniculata_contig1989.5079.1 vs. uniprot
Match: A0A0P1A5J5_PLAHL (Camk camk1 protein kinase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A5J5_PLAHL)

HSP 1 Score: 177 bits (448), Expect = 2.130e-52
Identity = 79/112 (70.54%), Postives = 94/112 (83.93%), Query Frame = 1
Query:    1 KLADFGLAKLLNYDAMLTTACGTPGYVAPEILERRPYGKEVDMWSVGVIAYILLCGFPPFYDESNDVMFQAIKSGSYEFPSPFWDDVDKGAKDTIGCLLVLDPRKRYTAEQV 336
            K+ DFGLAKL+  D+++ TACGTPGYVAPEILE RPYG EVD+WS+GVIAYILLCGFPPFYDE+N  +FQ+IKSG Y++PSP+WD V   AKD I  LLV+DP KR TA+QV
Sbjct:  161 KIVDFGLAKLIKDDSLMQTACGTPGYVAPEILECRPYGAEVDLWSLGVIAYILLCGFPPFYDENNAALFQSIKSGVYDYPSPYWDCVSDSAKDLISRLLVVDPLKRLTAQQV 272          
BLAST of mRNA_H-paniculata_contig1989.5079.1 vs. uniprot
Match: A0A8K1FJ45_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FJ45_PYTOL)

HSP 1 Score: 177 bits (448), Expect = 2.930e-52
Identity = 78/112 (69.64%), Postives = 95/112 (84.82%), Query Frame = 1
Query:    1 KLADFGLAKLLNYDAMLTTACGTPGYVAPEILERRPYGKEVDMWSVGVIAYILLCGFPPFYDESNDVMFQAIKSGSYEFPSPFWDDVDKGAKDTIGCLLVLDPRKRYTAEQV 336
            K+ADFGLAKL+  D+++ TACGTPGYVAPEILE +PYG EVD+WS+GVIAYILLCGFPPFYDE+N  +F +IKSG ++FPSP+WD V   AKD I  LLV+DP+KRYTA+ V
Sbjct:  161 KIADFGLAKLVKGDSLMQTACGTPGYVAPEILEGKPYGPEVDLWSLGVIAYILLCGFPPFYDENNAALFASIKSGIFDFPSPYWDCVSGSAKDLISRLLVVDPKKRYTAQHV 272          
BLAST of mRNA_H-paniculata_contig1989.5079.1 vs. uniprot
Match: A0A662WDB6_9STRA (Protein kinase domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WDB6_9STRA)

HSP 1 Score: 177 bits (448), Expect = 3.080e-52
Identity = 78/112 (69.64%), Postives = 96/112 (85.71%), Query Frame = 1
Query:    1 KLADFGLAKLLNYDAMLTTACGTPGYVAPEILERRPYGKEVDMWSVGVIAYILLCGFPPFYDESNDVMFQAIKSGSYEFPSPFWDDVDKGAKDTIGCLLVLDPRKRYTAEQV 336
            K+ADFGLAKL+  D+++ TACGTPGYVAPEILE RPYG EVD+WS+GVIAYILLCGFPPFYDE+N  +FQ+IKSG Y++PSP+WD V   AKD I  LLV+D ++R+TA+QV
Sbjct:  161 KIADFGLAKLIKGDSLMQTACGTPGYVAPEILEGRPYGAEVDLWSLGVIAYILLCGFPPFYDENNAALFQSIKSGVYDYPSPYWDCVSDSAKDLISRLLVVDSKERFTAKQV 272          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1989.5079.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBX0_ECTSI1.810e-5980.36Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A835ZAV1_9STRA3.660e-5877.68Phosphorylase kinase n=1 Tax=Tribonema minus TaxID... [more]
A0A7S2UWQ7_9STRA2.030e-5473.21Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A3F2RV86_9STRA1.380e-5370.54Protein kinase domain-containing protein n=1 Tax=P... [more]
H3GVV5_PHYRM1.640e-5370.54Protein kinase domain-containing protein n=18 Tax=... [more]
A0A6H5K1Z8_9PHAE2.470e-5367.69Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A7S1CJU1_9STRA1.510e-5268.75Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A0P1A5J5_PLAHL2.130e-5270.54Camk camk1 protein kinase n=1 Tax=Plasmopara halst... [more]
A0A8K1FJ45_PYTOL2.930e-5269.64Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A662WDB6_9STRA3.080e-5269.64Protein kinase domain-containing protein n=1 Tax=N... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1989contigH-paniculata_contig1989:3029..4550 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score183.0
Seed ortholog evalue7.9e-44
Seed eggNOG ortholog4787.PITG_17410T0
KEGG koko:K08794,ko:K17530
KEGG Pathwayko04921,ko04925,map04921,map04925
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Lipopolysaccharide kinase (Kdo/WaaP) family
EggNOG OGs3Q7IU@4776,KOG0032@1,KOG0032@2759
Ec32 ortholog descriptionProtein kinase domain
Ec32 orthologEc-20_003580.1
EC2.7.11.1,2.7.11.17
COG Functional cat.T
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Exons3
Model size336
Cds size336
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1989.5079.1prot_H-paniculata_contig1989.5079.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1989 3029..4550 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929501.227558-CDS-H-paniculata_contig1989:3028..31661622929501.227558-CDS-H-paniculata_contig1989:3028..3166Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1989 3029..3166 -
1691480888.4439092-CDS-H-paniculata_contig1989:3028..31661691480888.4439092-CDS-H-paniculata_contig1989:3028..3166Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1989 3029..3166 -
1622929501.2481596-CDS-H-paniculata_contig1989:3601..37721622929501.2481596-CDS-H-paniculata_contig1989:3601..3772Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1989 3602..3772 -
1691480888.4615412-CDS-H-paniculata_contig1989:3601..37721691480888.4615412-CDS-H-paniculata_contig1989:3601..3772Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1989 3602..3772 -
1622929501.2689245-CDS-H-paniculata_contig1989:4523..45501622929501.2689245-CDS-H-paniculata_contig1989:4523..4550Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1989 4524..4550 -
1691480888.472308-CDS-H-paniculata_contig1989:4523..45501691480888.472308-CDS-H-paniculata_contig1989:4523..4550Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1989 4524..4550 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1989.5079.1

>prot_H-paniculata_contig1989.5079.1 ID=prot_H-paniculata_contig1989.5079.1|Name=mRNA_H-paniculata_contig1989.5079.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp
KLADFGLAKLLNYDAMLTTACGTPGYVAPEILERRPYGKEVDMWSVGVIA
YILLCGFPPFYDESNDVMFQAIKSGSYEFPSPFWDDVDKGAKDTIGCLLV
LDPRKRYTAEQV
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mRNA from alignment at H-paniculata_contig1989:3029..4550-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1989.5079.1 ID=mRNA_H-paniculata_contig1989.5079.1|Name=mRNA_H-paniculata_contig1989.5079.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1522bp|location=Sequence derived from alignment at H-paniculata_contig1989:3029..4550- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGCTGGCTGATTTCGGGCTCGCCAAGGTAACAATGCCACCGACATCAGC ACTCGTCACATGTGTAACAGTGTCAGCACTCTCACTGGGAACAGAGATTT AGGCTCAGCGAGAAATCCATATTTTCAACGGGTGCACTGGACGTCTAAAA TTTACGTTTGAAGTGGTACACGCACAACCTCATTTTCTCACGAGTGACTT GTGTATTGTAACAACCTAGTCCTGGGATATGTTGCGGCCGTTTTCCTATC AGAGAAATTAAGATTTTATTGGAGATTGCTGCAGTGTCACGGAGTGTGCC AGCAAGCAATGCAGGGGGTATTGAAGAGTCACCATTTTGCCAACGTGCTT GGTTCTGTCACTGGTCAGAAATGAGGATGGGATGTTCAGCCACTTTTGAC CGCAGCACCTGATGATCGTGCATCGTGGGGTATTTAAAAGCAGAGTGTCA AGTGCCATGACACACGTTAGATGTACTGATCGCCGATAACCACAGAAAAA TGTGTGGATGTACACAGGTATTGCACGCAAAAAATGTGGAAGATCTTTCT CTCGCCACACAACGTCTGCATATACGTGGCTACACACCGCGTGTCGCGTA GTTAACGTGGTGTGGCACTTGATGATTGCCCTTCACACCCTCGAAAAACG ATTTAAACTAGAAAGACAGGATTGTTTTGCTTTGTGCTGCATCTGCTGCG TGCCCGGTTTGAAATTCCCCATCCTGTTTTTTTCTTTTTGTTTTCCCCTG CCTCTGAAATATTACCCCTTGTGGATAGCTGTTAAATTATGATGCCATGC TGACCACGGCTTGCGGCACCCCGGGGTACGTAGCCCCGGAGATCTTGGAA CGCCGGCCCTATGGCAAGGAGGTGGACATGTGGAGCGTGGGCGTGATTGC TTACATTCTGTTGTGCGGCTTCCCTCCGTTCTACGACGAGAGCAACGACG TGAGTTGCCTGCCCTCTCGTGTCTTCGGGGTTTGGTCGTTGATGCCGCCT GGAGCGATCGTTGCTCCTGTTACTCCAATCTAACCCCGTAAGGAGCTAGT GGCTCATGATCCGAGCGGATCGCGGTGCGTTGCTGTGGGTTACTTCGCAT TTCTATGCGGTGCTACGCGAGGTAATAGAAACAGCCTGGTGGTATCAAGC CTCGGCGTGGCGTCGCGACCGCTGGCAAGAAAAGCCCACAGGTGTTGGCG GTGCTGTGATATAGAGTGCCGATATTCGCCTGAAATTCATGGGTAAGTGC ACGCTACTGCTGCTACCGCTGCATCTTGGTTATTTATTGTGACGTTGTTT TTTCGTCTTCCTCCTCGCCCGCCGCCGCCGCCTTCGCCACCACTATGATC ACCCTCATCGCATCAATCAACCGGCGATAAGTAGGTTATGTTCCAAGCGA TCAAGTCAGGATCTTACGAGTTTCCGAGCCCTTTCTGGGACGACGTGGAC AAAGGTGCAAAGGACACCATAGGATGCCTCTTGGTCCTCGACCCTAGGAA GCGATATACGGCAGAACAGGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig1989:3029..4550-

>mRNA_H-paniculata_contig1989.5079.1 ID=mRNA_H-paniculata_contig1989.5079.1|Name=mRNA_H-paniculata_contig1989.5079.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at H-paniculata_contig1989:3029..4550- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGCTGGCTGATTTCGGGCTCGCCAAGAAGCTGGCTGATTTCGGGCTCGC
CAAGCTGTTAAATTATGATGCCATGCTGACCACGGCTTGCGGCACCCCGG
GGTACGTAGCCCCGGAGATCTTGGAACGCCGGCCCTATGGCAAGGAGGTG
GACATGTGGAGCGTGGGCGTGATTGCTTACATTCTGTTGTGCGGCTTCCC
TCCGTTCTACGACGAGAGCAACGACCTGTTAAATTATGATGCCATGCTGA
CCACGGCTTGCGGCACCCCGGGGTACGTAGCCCCGGAGATCTTGGAACGC
CGGCCCTATGGCAAGGAGGTGGACATGTGGAGCGTGGGCGTGATTGCTTA
CATTCTGTTGTGCGGCTTCCCTCCGTTCTACGACGAGAGCAACGACGTTA
TGTTCCAAGCGATCAAGTCAGGATCTTACGAGTTTCCGAGCCCTTTCTGG
GACGACGTGGACAAAGGTGCAAAGGACACCATAGGATGCCTCTTGGTCCT
CGACCCTAGGAAGCGATATACGGCAGAACAGGTAGTTATGTTCCAAGCGA
TCAAGTCAGGATCTTACGAGTTTCCGAGCCCTTTCTGGGACGACGTGGAC
AAAGGTGCAAAGGACACCATAGGATGCCTCTTGGTCCTCGACCCTAGGAA
GCGATATACGGCAGAACAGGTA
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